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41 results for “cytochrome c oxidase subunit I”
Figure 2. Minimum-evolution tree deduced from cytochrome c oxidase subunit I in DNA barcoding and morphology reveal exceptional species diversity of Scoparia (Lepidoptera: Crambidae) from the Hailuogou Glacier area, China
Figure 2. Minimum-evolution tree deduced from cytochrome c oxidase subunit I (COI) gene sequences. Sequences were corrected with the Kimura two-parameter substitution model. Codon positions included were 1st + 2nd + 3rd + noncoding. Values represented at the nodes of branches are bootstrap values (1000 replicates).
Figure 1. Neighbour-joining tree deduced from the cytochrome c oxidase subunit I in DNA barcoding and morphology reveal exceptional species diversity of Scoparia (Lepidoptera: Crambidae) from the Hailuogou Glacier area, China
Figure 1. Neighbour-joining tree deduced from the cytochrome c oxidase subunit I (COI) gene sequences using MEGA 5. Sequences were corrected with the Kimura two-parameter substitution model. Codon positions included were 1st + 2nd + 3rd + noncoding. Values represented at the nodes of branches are bootstrap values (1000 replicates).
Figure 3. Cytochrome c oxidase subunits I and II in Songs, genetics, and morphology: revealing the taxonomic units in the European Cicadetta cerdaniensis cicada group, with a description of new taxa (Hemiptera: Cicadidae)
Figure 3. Cytochrome c oxidase subunits I and II (COI and COII) mitochondrial DNA concatenated phylogeny of the Cicadetta cerdaniensis song group. Maximum-likelihood (ML, GARLI) phylogenies are shown with ML branch lengths (box on the left) and ML bootstrap support. Nodes with less than 50% bootstrap support have been collapsed. Cicadetta fangoana was selected as the out-group taxon; taxa colours correspond to Figure 9. Specimen names include two-letter country codes followed by species or informal names (later in this study: 'cerdaniensis'-like = Cicadetta sibillae sp. nov., 'intermediate' = Cicadetta anapaistica lucana ssp. nov.). Specimen identification numbers are congruent with the type series for undescribed taxa. Cicadetta cantilatrix specimens originate from Switzerland, France, Poland, Slovenia, Macedonia, and Bulgaria. Type localities of Cicadetta cantilatrix, Cicadetta cerdaniensis, and Cicadetta anapaistica are included.
Figure 10. Haplotype parsimonious networks constructed from cytochrome c oxidase subunit I in A new genus of large hydrothermal vent-endemic gastropod (Neomphalina: Peltospiridae)
Figure 10. Haplotype parsimonious networks constructed from cytochrome c oxidase subunit I sequences of 30 specimens of: A, Gigantopelta chessoia sp. nov.; B, Gigantopelta aegis sp. nov. Open circles are represented haplotypes, number inside the circles and sizes of the circles correspond to number of individuals sharing the haplotype. Filled circles are hypothesized intermediate haplotypes that are not represented by sequences.
Figure 5. Phylogenetic relationships inferred from cytochrome c oxidase subunit I in Pseudocryptic speciation of Chrysochroa fulgidissima (Coleoptera: Buprestidae) with two new species from Korea, China and Vietnam
Figure 5. Phylogenetic relationships inferred from cytochrome c oxidase subunit I + 16S ribosomal RNA gene (1193 bp). Labelling as in Figure 3.
Figure 3. Phylogenetic relationships inferred from cytochrome c oxidase subunit I in Pseudocryptic speciation of Chrysochroa fulgidissima (Coleoptera: Buprestidae) with two new species from Korea, China and Vietnam
Figure 3. Phylogenetic relationships inferred from cytochrome c oxidase subunit I (664 bp). Colours represented within each terminal taxa denote biogeographical populations of Chrysochroa fulgidissima as given in Table 1. Numbers above branches are indicated by the neighbour-joining bootstrap value, Bayesian posterior probabilities, and the maximum likelihood bootstrap proportions. Numbers cited under branches are parsimony bootstrap symmetric resampling and jackknife support, respectively. The topology was constructed by Bayesian phylogenetic analysis.
Figure 2. Cytochrome oxidase c subunit I in An integrative approach to characterize cryptic species in the Thoracostoma trachygaster Hope, 1967 complex (Nematoda: Leptosomatidae)
Figure 2. Cytochrome oxidase c subunit I. Neighbourjoining tree based on P-distances with haplotypes from 2007 and the new haplotypes found in 2009 and 2010 (represented by numbers followed by clade – I, II, or III). The haplotypes from clade I and II that were recovered from 2007 appear underlined in the tree. The corresponding taxon names of the other clades can be found in Derycke et al. (2010a).
Figure 1. Best selected tree from a maximum likelihood reconstruction for the cytochrome c oxidase subunit I in Integrating DNA and morphological taxonomy to describe diversity in poorly studied microscopic animals: new species of the genus Abrochtha Bryce, 1910 (Rotifera: Bdelloidea: Philodinavidae)
Figure 1. Best selected tree from a maximum likelihood reconstruction for the cytochrome c oxidase subunit I data set under the general time reversible model with gamma distribution, displaying all compatible groupings and with average branch lengths proportional to numbers of substitutions per site, indicated by the scale bar. Bootstrap support values above 80% are shown below each branch; posterior probabilities above 0.8 from 36 000 sampled trees from the Bayesian analysis are shown above each branch. Support values for within-species relationships are not shown. Filled circles indicate clades (and singlets) identified by the 4¥ rule; open diamonds indicate clades (and singlets) identified by the generalized mixed yule coalescent model. Names refer to the species and the clonal populations.
FIGURE 3. Neighbor-joining tree for Cytochrome C Oxidase Subunit I in Two new species and three new provincial records of Neoperla (Plecoptera: Perlidae) from Nanling Mountains, China
FIGURE 3. Neighbor-joining tree for Cytochrome C Oxidase Subunit I (COI) sequences (659 bp) from Neoperla annulatispina Mo, Li & Wang, sp. nov. and N. nigromarginata Li & Zhang, 2014, modeled by Kimura-2-parameter (K2P).
FIGURE 8—Phylogenetic tree inferred using Bayesian Inference derived from cytochrome c oxidase subunit I in How many species of genus Lernaeopoda Blainville, 1822 (Siphonostomatoida: Lernaeopodidae) are there in the southwestern Atlantic?
FIGURE 8—Phylogenetic tree inferred using Bayesian Inference derived from cytochrome c oxidase subunit I (COI) gene dataset. Numbers in the nodes represent posterior probability (<0.95 are not shown).
Data from: Site specific distribution of oak rhizosphere associated oomycetes revealed by cytochrome c oxidase subunit II metabarcoding
Open the record for dataset details and reuse information.
Data from: Cytochrome c oxidase subunit 1 barcode data of fish of the Nayband National Park in the Persian Gulf and analysis using meta-data flag several cryptic species
Open the record for dataset details and reuse information.
Data from: Rapid and accurate taxonomic classification of insect (Class Insecta) cytochrome c oxidase subunit 1 (COI) DNA barcode sequences using a naïve Bayesian classifier
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Figure 2 from: Grzywacz B, Tatsuta H (2017) Phylogenetic relationship of Japanese Podismini species (Orthoptera: Acrididae: Melanoplinae) inferred from a partial sequence of cytochrome c oxidase subunit I gene. Journal of Orthoptera Research 26: 11-19. https://doi.org/10.3897/jor.26.14547
Figure 2 - Phylogenetic tree of Podismini based on the Bayesian analysis (BI) of concatenated COI sequences. BI posterior probability (PP) and maximum likelihood bootstrap values (BV) are shown near resolved branches (only support values above 50% are shown) as PP/BV. The respective clades are marked with a square and Roman numeral. We examined Ognevia longipennis from China because of the availability and thus did not treat this specimen as Japanese Podismini (see also text). Light green frames denote the Japanese Podismini analyzed in the present study.
Figure 2 from: Grzywacz B, Tatsuta H (2017) Phylogenetic relationship of Japanese Podismini species (Orthoptera: Acrididae: Melanoplinae) inferred from a partial sequence of cytochrome c oxidase subunit I gene. Journal of Orthoptera Research 26: 11-19. https://doi.org/10.3897/jor.26.14547
Figure 2 - Phylogenetic tree of Podismini based on the Bayesian analysis (BI) of concatenated COI sequences. BI posterior probability (PP) and maximum likelihood bootstrap values (BV) are shown near resolved branches (only support values above 50% are shown) as PP/BV. The respective clades are marked with a square and Roman numeral. We examined Ognevia longipennis from China because of the availability and thus did not treat this specimen as Japanese Podismini (see also text). Light green frames denote the Japanese Podismini analyzed in the present study.
Figures 2–3. Mitochondrial cytochrome c oxidase subunit 1 in Molecular confirmation of the occurrence of Anguilla interioris (Actinopterygii: Anguilliformes) in North Maluku of Indonesia and mitochondrial DNA haplotype diversity among existing specimens
Figures 2–3. Mitochondrial cytochrome c oxidase subunit 1 (CO1) 551 bp sequence analyses. (2) Phylogenetic analysis based on maximum likelihood algorithm with the sample codes, GenBank or BOLD accession numbers and sample sites shown. Bootstrap percentages are shown at the tree nodes. (3) Haplotype network with the haplotypes labelled as H1 to H9. The circle size is proportional to the number of samples, and different sample sites are represented by different colours. Small white circle represents median vector which is the hypothesized or missing haplotype. Each dash on the line symbolizes one mutational step.
Figure 2. A neighbour-joining tree using 604 cytochrome c oxidase subunit I in Phylogenetic relationship among slender loris species (Primates, Lorisidae: Loris) in Sri Lanka based on mtDNA CO1 barcoding
Figure 2. A neighbour-joining tree using 604 cytochrome c oxidase subunit I (CO1) sequences from 7 different slender loris (Loris) taxas found in Sri Lanka with their external appearance.
Figure 3. A neighbor joining tree using cytochrome c oxidase subunit 1 in DNA barcoding of black cherry aphid Myzus cerasi (Fabricus, 1775) (Hemiptera: Aphididae) populations collected from Prunus avium and Prunus cerasus
Figure 3. A neighbor joining tree using cytochrome c oxidase subunit 1 sequences from Myzus cerasi populations.
Figure 1 from: Grzywacz B, Tatsuta H (2017) Phylogenetic relationship of Japanese Podismini species (Orthoptera: Acrididae: Melanoplinae) inferred from a partial sequence of cytochrome c oxidase subunit I gene. Journal of Orthoptera Research 26: 11-19. https://doi.org/10.3897/jor.26.14547
Figure 1 - A map of Japan with the distribution of nine genera of Japanese Podismini.
Figure 1 from: Grzywacz B, Tatsuta H (2017) Phylogenetic relationship of Japanese Podismini species (Orthoptera: Acrididae: Melanoplinae) inferred from a partial sequence of cytochrome c oxidase subunit I gene. Journal of Orthoptera Research 26: 11-19. https://doi.org/10.3897/jor.26.14547
Figure 1 - A map of Japan with the distribution of nine genera of Japanese Podismini.
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