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34,777 results for “disease”
Smartwatch gait dataset in simulated Parkinson's disease restricted arm swing conditions
<p>Movement data was collected through smartwatches to monitor gait impairments in healthy subjects. </p> <p>The dataset collected for this study consists of triaxial acceleration and triaxial gyroscope data from 24 subjects when performing a set of gait activities while wearing a smartwatch in their preferred wrist. Each participant performed three gait activities twice, 30 meters straight walk while carrying progressively heavier loads (0 kg, 2 kg, and 4 kg) to simulate restricted arm swing. So, considering that there were 24 participants, 3 different activities and each activity performed twice, a total of 144 data files were obtained.</p> <p>Data was collected using a sample rate of 50Hz. Acceleration is expressed in m/s^2 and gyroscope data in rad/s.</p> <p>Check the " Bioclite_Restricted_Arm_Swing_Data_README.txt" file for details about this dataset.</p> <p><strong>Funding:</strong></p> <p>This research was funded by the following projects:</p> <div> <p>(1) Proyectos de Generación de Conocimiento 2021. PID2021-123708OB-I00, funded by MCIN/AEI/10.13039/ 501100011033/ FEDER, EU</p> </div>
PWAS Hub: exploring gene-based associations of complex diseases with sex dependency - backing data
<p>The contents of the PWAS database is presented on <a title="The PWAS hub" href="https://pwas.huji.ac.il/?ver=2" target="_blank" rel="noopener">pwas.huji.ac.il</a>. The frontend and backend were build on top of a dynamical databse system. Please consult the direct API for PWAS if you wish to query the database directly: <a title="The PWAS API" href="https://pwas.huji.ac.il/API?ver=2" target="_blank" rel="noopener">pwas.huji.ac.il/API</a></p> <p>This is a PostgreSQL dump file that was created using <code>pg_dump</code>, the backup/restore procedure for PostgreSQL. To restore this into PostgreSQL do</p> <p>[a] create a database</p> <p><code>createdb DATABASE</code></p> <p>[b] on the terminal run</p> <p><code>pg_restore -vcC -h HOST -p PORT -d DATABASE < pwas_dump.20220628.psql</code></p> <p>The HOST and PORT are determined by your installation and DATABASE is given by you in step [a] abobe.</p> <p> </p> <p>To access the PWAS tables, look for table names that begin with <code>pwasAPI_</code></p> <p>A possible query to the database may look like this:</p> <p><code>SELECT * FROM "pwasAPI_genediseasestatpwas" WHERE uniprot_id = 'P09914' AND disease = 'C44';</code></p> <p>This query lists the data that associate uniprot id <strong>P09914</strong> (gene symbol IFIT1) and disease ICD-10 <strong>C44</strong> (Other malignant neoplasms of skin)</p>
Dataset: Co-composting rose waste as a sustainable waste management strategy: Nutrient availability and disease control
<p>This dataset and these scripts supports the article 'Assessing the potential of co-composting rose waste as a sustainable waste management strategy: Nutrient availability and disease control' as published in Journal of Cleaner production. https://doi.org/10.1016/j.jclepro.2023.136685</p> <p>Roses are an important crop for the floricultural sector of Kenya and roses are a perennial crop and under continuous production for six to ten years. The cultivation produces large quantities of green waste, up to 50 kg per hectare per day. In this experiment we investigated the potential of co-composting rose waste on a small scale. The objective was to increase the understanding of composting lignocellulosic rose waste, which will help with the implementation of composting practices within Kenyan rose production and thereby reduce its negative ecological impact.</p> <p>In a small-scale composting system (30L) the evolution of five mixtures was closely monitored in terms of their physico-chemical parameters. Furthermore, the in-vitro disease suppressive capacity of mature rose waste was assessed. </p>
Graphic Illustration of our Digital Collections Data and Tracking Disease Workshop Session: Discussion and Synthesis
<p>Karina Branson of <a href="https://www.conversketch.com/" target="_blank" rel="noopener">ConverSketch</a>, graphically recorded and helped to facilitate this Discussion section of our NSF-supported Workshop: Digital Collections Data and Tracking Disease.</p>
Graphic Illustration of Talks in our Digital Collections Data and Tracking Disease Workshop Section: Case Studies
<p>Karina Branson of <a href="https://www.conversketch.com/" target="_blank" rel="noopener">ConverSketch</a>, graphically recorded and helped to facilitate this Case Studies section of our NSF-supported Workshop: Digital Collections Data and Tracking Disease.</p>
Graphic Illustration of Talks in our Digital Collections Data and Tracking Disease Workshop Section: Museum Perspectives
<p>Karina Branson of <a href="https://www.conversketch.com/" target="_blank" rel="noopener">ConverSketch</a>, graphically recorded and helped to facilitate this Museum Perspectives section of our NSF-supported Workshop: Digital Collections Data and Tracking Disease.</p>
DATA to support Dyrk1a function in glutamatergic neurons in mouse models of Mental Retardation Disease 7 (MRD7) and Down syndrome (or trisomy 21)
<p>Four datasets are provided here to support the function of Dyrk1a in glutamatergic neurons in mouse models of Mental Retardation Disease 7 (MRD7) and Down syndrome (or trisomy 21):</p> <p>- RNAseq data to compare hippocampal expressed genes at postnatal day 30, in the complete inactivation of Dyrk1a in glutamatergic neurons using a Dyrk1a floxed-allele and the Camk2:Cre transgene</p> <p>- data from all the figures</p> <p>-data from all the supplementary figures </p> <p>-data from the quantitative proteomic analysis made from hippocampal extract of wt, Dyrk1a heterozygote, Dp(16)1Yey and Dp(16)1Yey with only two functional copies of Dyrk1a</p> <p>Detailed information are available in the article by Brault et al 2021, deposited in Biorachiv https://doi.org/10.1101/2021.05.01.442242 </p>
Associating Land Cover Changes with Climate Sensitive Infection in Fennoscandia, as part of the CLINF project: Example on Tick-Borne Diseases
<p>The data was used as part of the IJERPH article below. The GeoJSON and shapefile ZIP archive are two versions of the same geometries to represent geographically the districts whole of Fennoscandia and the Russian districts of Leningrad, St Petersburg, Vologda, Arkhangelsk, Nenetsia, Murmansk, Karelia, and Komi, making up 69 districts used for the analysis.</p> <p>Leibovici DG, Bylund H, Björkman C, Tokarevich N, Thierfelder T, Evengård B, Quegan S (2021). Associating Land Cover Changes with Patterns of Incidences of Climate Sensitive Infections: An Example on Tick-Borne Diseases in the Nordic Area. <strong><em>International Journal of Environmental Research and Public Health, 18(20):10963. <a href="https://doi.org/10.3390/ijerph182010963">doi:10.3390/ijerph182010963</a></em></strong></p> <p>Special Issue: <a href="https://www.mdpi.com/journal/ijerph/special_issues/Climate-Change_Effects">https://www.mdpi.com/journal/ijerph/special_issues/Climate-Change_Effects</a></p> <p> </p>
Invasive pneumococcal diseases in children and adults before and after introduction of the 10-valent pneumococcal conjugate vaccine into the Austrian national immunization program
<p>The dataset contains case-based data on invasive pneumococcal disease in Austria, 2009/01 to 2017/02, by year and month of diagnosis, serotype and clinical presentation. Cases are anonymised by using a random ID.</p>
Shared genetic factors between stress-related disorders and cardiovascular disease
<p>The ultimate goal of this study is to advance our understanding of the biological mechanisms of stress-related disorders and CVD, through demonstrating pleiotropic genes and pathways underlying their comorbidity that are potentially testable as targets of future interventions in experimental investigations.</p>
Allele-specific quantitation of ATXN3 and HTT transcripts in polyQ disease models.
<p>Precise values obtained during the research that led to the publishing of scientific paper entitled 'Allele-specific quantitation of ATXN3 and HTT transcripts in polyQ disease models'.</p>
Invasive grass litter suppresses a native grass species and promotes disease
Plant litter can alter ecosystems and promote plant invasions by altering resource availability, depositing phytotoxins, and transmitting microorganisms to living plants. Transmission of microorganisms from invasive plant litter to live plants may gain importance as invasive plants, which often escape pathogens upon introduction to a new range, acquire new pathogens over time. It is unclear, however, if invasive plant litter affects native plant communities by promoting disease. Microstegium vimineum is an invasive grass that suppresses native populations, in part through litter production, and has acquired new fungal leaf spot diseases since its introduction to the United States. In a greenhouse experiment, we evaluated how M. vimineum litter and its pathogens mediated competition with the native grass Elymus virginicus. Microstegium vimineum litter promoted disease on E. virginicus and suppressed establishment and biomass of both species. Litter had stronger negative effects on E. virginicus than M. vimineum, increasing the relative biomass of M. vimineum. Live plant competition reduced biomass of both species and live M. vimineum increased disease incidence on E. virginicus. Altogether, invasive grass litter suppressed both species, ultimately favoring the invasive species in competition, and increased disease incidence on the native species.
Number of cases of coronavirus disease (COVID-19) in Ireland
<p>Datasets in this publication report the number of diagnoses with coronavirus disease (COVID-19) as reported by the Department of Health in Ireland. This includes new cases diagnosed per day and cumulative cases, hospitalisations, ICU admissions, deaths, number of healthcare workers, number of clusters, gender of cases, age groups of cases, mode of transmission, age groups of those hospitalised, and cases per county. To aid standardisation of age groups and cases per county, the population estimates by age group for 2019 and the actual county population in the 2016 Census from Ireland's Central Statistics Office are also included as separate datasets, to allow expression of cases per million population.</p> <p>These are </p> <ol> <li><em>doh_covid_ie_cases_analysis.csv</em>, where data from Ireland's Health Protection Surveillance Centre is included up to midnight on each included date (currently up to 16-Jun-2020). </li> <li><em>age_population_cso_2019.csv</em></li> <li><em>counties_population_cso_2016.csv</em></li> </ol> <p><em>age_population_cso_2019.csv </em>has been updated to include separate population estimates for those aged 65-74 years, 75-84 years, and 85 years and over. This is in response to the HSPC releasing case and hospitalisation data for these groups rather than a combined 65 years and over group.</p> <p><em>counties_population_cso_2016.csv </em>has been updated to remove trailing spaces in the 'county' column.</p> <p><em>doh_covid_ie_cases_analysis.csv </em>is regularly updated at <a href="https://github.com/frankmoriarty/covid_ie/blob/master/doh_covid_ie_cases_analysis.csv">https://github.com/frankmoriarty/covid_ie/blob/master/doh_covid_ie_cases_analysis.csv</a></p>
What do studies in wild mammals tell us about human emerging viral diseases in Mexico? database
<p>The database used in the article "<strong>What do studies in wild mammals tell us about human emerging viral diseases in Mexico?</strong>". It contains all available records of viral zoonotic and potential zoonotic species in Mexican wild mammals.</p> <p>The first file is a .csv file and the second one is .xls</p>
MAVIS Twitter dataset: A collection of tweets and sentiment analysis in Spanish about vaccines and diseases during the period 2015-2018
<p>MAVIS dataset comprises a full knowledge base regarding Twitter messages published in Spanish during the period 2015-2018, in the context of sentiment analysis of specific vaccines and their related diseases. Such diseases and vaccines are summarized as follows:</p> <ul> <li>Invasive meningococcal disease (“EMI” in Spanish): Bexsero, Trumenba, Nimenrix</li> <li>Invasive pneumococcal disease (“ENI” in Spanish)</li> <li>Influenza</li> <li>Hepatitis</li> <li>Rotavirus: Rotarix, Rotateq</li> <li>Measles (“Sarampión” in Spanish) and MMR (“Triple vírica” in Spanish)</li> <li>Sepsis</li> <li>Whooping cough (“Tosferina” in Spanish)</li> <li>Chickenpox (“Varicela” in Spanish): Varivax, Varilrix; and Shingles (“Zoster” in Spanish)</li> <li>Human papillomavirus infection (“VPH” in Spanish): Cervarix, Gardasil</li> </ul> <p>Tweets have been manually classified as having a negative or non-negative sentiment by 5 experts. Moreover, an automatic classification has been performed by 3 different tools: IBM Watson (now Watson Tone Analyzer, <a href="https://www.ibm.com/watson/services/tone-analyzer/">https://www.ibm.com/watson/services/tone-analyzer/</a>), Google Cloud Natural Language (<a href="https://cloud.google.com/natural-language">https://cloud.google.com/natural-language</a>), and Meaning Cloud (<a href="https://www.meaningcloud.com/">https://www.meaningcloud.com/</a>). IBM Watson and Google Cloud Natural Language returned a numerical sentiment score ranging from -1 to 1, while Meaning Cloud returned a categorical variable with the values ‘P+’, ‘P’, ‘NEU’, ‘N’ and ‘N+’, which were converted to 1, 2, 3, 4 and 5 respectively.</p> <p>With these variables (IBM Watson, Google Cloud Natural Language, and Meaning Cloud annotations and the experts’ classification as the target label), a machine learning metamodel was developed. Tweets were also annotated with the sentiment output given by this classifier. </p> <p>The provided data includes intrinsic tweets information, intrinsic information regarding the users that posted the tweets, the keywords mentioned in each tweet, and the annotations that the experts, the tools, and the model gave to each tweet.</p> <p><strong>Funding</strong>: This dataset was obtained with funding from MSD, Spain under MAVIS Study (VEAP ID: 7789).</p> <p><strong>Current studies using this dataset at the moment of the publication</strong>:</p> <ul> <li>Rodríguez-González et al., “Creating a metamodel based on machine learning to identify the sentiment of vaccine and disease-related messages in Twitter: the MAVIS study” in 2020 IEEE 33st International Symposium on Computer-Based Medical Systems (CBMS), Jul. 2020, p. 6. DOI: 10.1109/CBMS49503.2020.00053</li> <li>Rodríguez-González et al., "Identifying Polarity in Tweets from an Imbalanced Dataset about Diseases and Vaccines Using a Meta-Model Based on Machine Learning Techniques" in Applied Sciences, 2020, 10. DOI: 10.3390/app10249019</li> </ul>
A disease-specific functional connectome of Parkinson's disease patients.
<p>The contribution of the presented work is a data record featuring a disease-specific dataset of resting state functional magnetic resonance imaging (rs-fMRI) acquisitions of 75 Parkinson's disease (PD) patients prior to deep brain stimulation (DBS) implantation - the Tor-PD connectome. Specifically, the dataset comprises 77 matrices (in the folder entitled 'vol'), each containing blood-oxygen-level-dependent-signal (BOLD) signal values of every voxel in 77 corresponding rs-fMRI acquisitions in standard MNI152 NLIN 2009b space. BOLD signal time-series matrices are given as .mat files and are viewable in MATLAB. In addition to the matrices, we have also provided a mask in NIfTI-1 format corresponding to voxels in standard space where a BOLD signal could be calculated in >80% of the 77 matrices (NaN mask). The data records derived from this work can be obtained through Zenodo (https://zenodo.org/) and Lead DBS (<a href="http://lead-dbs.org/">http://lead-dbs.org/</a>). Crucially, the format of choice can be directly used without further conversion or preprocessing steps with openly available software (<a href="http://lead-dbs.org/">http://lead-dbs.org/</a>).</p>
Supplement 1: Full list of ICD10 codes and number of gene-disease links (tab-separated-value file); Supplement 2: Mapping (tab-separated-value file)
<p>Supplements to BioMedBridges deliverable 10.2 A prototype linking ICD10/SNOMED CT concepts to Ensembl gene identifiers:</p> <p><strong>Supplement 1</strong>: Full list of ICD10 codes and number of gene-disease links: table_icd10_gene_count_descr.tsv</p> <p><strong>Supplement 2</strong>: Mapping of disease terms: <em>ICD10_to_doid.tsv</em></p>
SeMRA Disease Mappings Database
<p>Supports the analysis of the landscape of disease nomenclature resources. See instructions for reproduction and usage in the attached README.md.</p>
PheKnowLator Human Disease KG Benchmarks: Class-Standard Relations-OWL (v2.0.0 - January 2021)
<p><strong>PKT Human Disease Knowledge Graph Benchmark Builds (v2.0.0)</strong></p><p><strong>Build Type: </strong><i>Class-Standard Relations-OWL</i></p><p><strong>Build Date: </strong>January 25, 2021</p><p> </p><h3><strong>Important Build Information</strong></h3><p>The benchmarks were originally built and stored using Google Cloud Platform (GCP) resources. For details and a complete description of this process, can be found on GitHub (<a href="https://github.com/callahantiff/PheKnowLator/tree/master/builds#readme">here</a>). Note that we have developed an archive for the builds on Zenodo. While the original GCP resources contained all associated files, due to the file size upload limits associated with each archive, we have limited the uploaded files to the KGs, associated metadata, and log files. The list of resources, including their URLs, and date of download, can all be found in the associated logs.</p><p>Details on each of the files generated by the build process can be found in the file associated with this directory (<a href="https://zenodo.org/records/10065431/files/PheKnowLator_HumanDiseaseKG_Output_FileInformation.xlsx?download=1">PheKnowLator_HumanDiseaseKG_Output_FileInformation.xlsx</a>).</p><p> </p><p>🚨 <strong>AVAILABLE FILES </strong>🚨 </p><ul><li>Available KG benchmark files are zipped and listed below.</li><li>For additional details on what each file contains, please see the associated Wiki page 👉 <a href="https://github.com/callahantiff/PheKnowLator/wiki/January-25%2C-2021">here</a>.</li></ul>
PheKnowLator Human Disease KG Benchmarks: Instance-Inverse Relations-OWLNETS (v2.0.0 - May 2020)
<p><strong>PKT Human Disease Knowledge Graph Benchmark Builds (v2.0.0)</strong></p><p><strong>Build Type: </strong><i>Instance-InverseRelations-OWLNETS</i></p><p><strong>Build Date: </strong>May 10, 2020</p><p> </p><h3><strong>Important Build Information</strong></h3><p>The benchmarks were originally built and stored using Google Cloud Platform (GCP) resources. For details and a complete description of this process, can be found on GitHub (<a href="https://github.com/callahantiff/PheKnowLator/tree/master/builds#readme">here</a>). Note that we have developed an archive for the builds on Zenodo. While the original GCP resources contained all associated files, due to the file size upload limits associated with each archive, we have limited the uploaded files to the KGs, associated metadata, and log files. The list of resources, including their URLs, and date of download, can all be found in the associated logs.</p><p>Details on each of the files generated by the build process can be found in the file associated with this directory (<a href="https://zenodo.org/records/10065431/files/PheKnowLator_HumanDiseaseKG_Output_FileInformation.xlsx?download=1">PheKnowLator_HumanDiseaseKG_Output_FileInformation.xlsx</a>).</p><p> </p><p>🚨 <strong>AVAILABLE FILES </strong>🚨 </p><ul><li>Available KG benchmark files are zipped and listed below.</li><li>For additional details on what each file contains, please see the associated Wiki page 👉 <a href="https://github.com/callahantiff/PheKnowLator/wiki/May-10%2C-2020">here</a>.</li></ul>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.