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789 results for “display”
Display a simulation of a batch or fed-batch cultivation of S. cerevisiae
<p>The model is implemented as it is described in the paper "Pham, Larsson, Enfors - 1998 - Growth and energy metabolism in aerobic fed-batch cultures of Saccharomyces cerevisiae Simulation and mod".<br> The batch and fed-batch are both implemented, the oscillation function was not used.<br> All parameters were taken from the paper and are saved under parameters.py. </p>
FIGURE 2 in A new species of hooddisplaying Thamnodynastes (Serpentes: Colubridae) from the Atlantic forest in southeast Brazil
FIGURE 2. Hooddisplay and diagnostic black blotches on dorsal forebody of Thamnodynastes longicaudus.
Research data supporting "Plasmonic chirality imprinting on nucleobase-displaying supramolecular nanohelices via metal-nucleobase recognition"
<p>This file contains the raw research data supporting the publication:</p> <p>Y. Lin<em> et al</em>., Plasmonic chirality imprinting on nucleobase-displaying supramolecular nanohelices via metal-nucleobase recognition, Angew. Chem. Int. Ed. 2017, DOI: 10.1002/anie.201610976.</p> <p> </p>
SpectrumLab display of carrier frequency of WWV-10, 21 Aug 2017
<p>NAME : Martin Potter, VE3OAT<br> GEOPOSIT : 45 15' 9.023" N 75 35' 27.60" W (Maidenhead FN25eg)<br> START TIME : 1400 UT<br> STATION CONFIG :<br> Multi-band vertical antenna with 18 radials.<br> Receiver Yaesu FTdx1200 in AM mode with audio bands limited to<br> 800-1200 Hz (18 dB/octave roll-off).<br> Trimble Thunderbolt 10 MHz output to HP 3325B sig generator set<br> to 9999 kHz and injected to station antenna.<br> Measured nominal 1 kHz beat note between WWV-10 and sig generator<br> using SpectrumLab software.<br> <br> Note : On 20 Aug, receiver AGC was ON. On 21 Aug, receiver AGC was<br> OFF and audio output level was set using RF Gain control. </p>
SpectrumLab display of carrier frequency of WWV-10, 20 Aug 2017
<p>NAME : Martin Potter, VE3OAT<br> GEOPOSIT : 45 15' 9.023" N 75 35' 27.60" W (Maidenhead FN25eg)<br> START TIME : 1400 UT<br> STATION CONFIG :<br> Multi-band vertical antenna with 18 radials.<br> Receiver Yaesu FTdx1200 in AM mode with audio bands limited to<br> 800-1200 Hz (18 dB/octave roll-off).<br> Trimble Thunderbolt 10 MHz output to HP 3325B sig generator set<br> to 9999 kHz and injected to station antenna.<br> Measured nominal 1 kHz beat note between WWV-10 and sig generator<br> using SpectrumLab software.<br> <br> Note : On 20 Aug, receiver AGC was ON. On 21 Aug, receiver AGC was<br> OFF and audio output level was set using RF Gain control. </p> <p> </p>
Two graphical displays from SpectrumLab of WWV-10 carrier frequency on 18 Aug 2017
<p>NAME : Martin Potter, VE3OAT<br> GEOPOSIT : 45 15' 9.023" N 75 35' 27.60" W (Maidenhead FN25eg)<br> START TIME : 1400 UT<br> STATION CONFIG :<br> Multi-band vertical antenna with 18 radials.<br> Receiver Yaesu FTdx1200 in AM mode with audio bands limited to<br> 800-1200 Hz (18 dB/octave roll-off).<br> Trimble Thunderbolt 10 MHz output to HP 3325B sig generator set<br> to 9999 kHz and injected to station antenna.<br> Measured nominal 1 kHz beat note between WWV-10 and sig generator<br> using SpectrumLab software.<br> <br> Note : On 20 Aug, receiver AGC was ON. On 21 Aug, receiver AGC was<br> OFF and audio output level was set using RF Gain control. </p> <p> </p>
Simulated Herbarium data for testing the accuracy with which specimen data can predict the timing and duration of population-level flowering displays
<p>This dataset provides code and example data for simulating specimen collections of flowering plants across North America, and for developing phenological predictions of population-level flowering onset and termination for these data. It further presents code for assessing the accuracy of these predictions relaticve to known (simulated) population-level flowering dates at the location of each collection.</p>
Vibrating aggression: Spider males perform an unusual assessment strategy during contest displays
<p>A recurrent question in animal contests is whether individuals adopt a self or mutual assessment rule to decide to withdraw from a contest. However, many empirical studies fail to find conclusive support for one of these two possibilities. A possible explanation is that assessment strategies vary between individuals. In the contests of the orb-web spider <em>Trichonephila clavipes</em>, males perform a vibrational display on webs that may escalate to physical contact. Since all individuals perform the vibrational phase and only some of them escalate, we proposed two hypotheses: 1) all individuals perform mutual assessment during the vibrational phase, or 2) some individuals that do not escalate adopt self-assessment, while individuals that escalated adopt mutual assessment. To evaluate these hypotheses, we investigated the relationship between the duration of the vibrational phase and frontal leg length (a proxy of male fight capacity) of loser and winner males in contests that escalated and did not escalate to the physical contact phase. We found a non-significant relationship between duration and losers leg length for both contests that escalate and did not escalate. While we found a positive relationship between duration and winners leg length, particularly in contests that did not escalate. These results do not provide support for mutual assessment or for a mix of different assessment rules among individuals. We suggest that in <em>T. clavipes</em>, the dynamics of the vibrational phase may be explained by two different contest strategies (opponent-only assessment or size-based aggressiveness) that are dependent on intruder motivation to escalate.</p>
F I G U R E 1 Map displaying the 14 in Migration patterns and navigation cues of Atlantic salmon post-smolts migrating from 12 rivers through the coastal zones around the Irish Sea
F I G U R E 1 Map displaying the 14 capture sites in 12 rivers where Atlantic salmon smolts (n = 1008) were captured for tagging in England, Scotland, Northern Ireland and the Republic of Ireland for this study. In addition, 60 hatchery origin smolts were tagged and released in the River Burrishoole. The coastal region each river belongs to is referenced in brackets next to the river name. Where Region one (1) refers to the Solway Firth (Rivers Derwent, Nith, Bladnoch); Region two (2) refers to the Clyde Estuary (Rivers Endrick and Gryffe); Region three (3) refers to the Bush Coastal region (rivers Bann, Bush, Carey and Glendun); Region four (4), refers to Lough Foyle (rivers Roe and Faughan); Region five (5), refers to Clew Bay (River Burrishoole). Tagged fish release sites are represented by stars, and acoustic receivers (n = 183) are represented by gray dots. Marine monitoring lines (A and B) in the Irish Sea are labeled in alphabetical order from south to north. Twenty-two acoustic receivers were initially deployed at monitoring line A. One hundred and eight acoustic receivers were deployed at monitoring line B and are labeled in numerical order from the furthest west receiver (R1) on the monitoring line to the furthest east (R108). Refer to Figure S2 for the locations of acoustic receivers that were not retrieved from marine monitoring line A (n = 2) and B (n = 9).
The data for: LCR in fungi display functional groups and are depleted in positively charged amino-acids
<p>Abstract</p> <p>The dataset consists of a TAB formatted table (Main_Dataset.tsv), that integrates information about protein domains (pfam_scan, GO terms), low complexity regions (SEG), signal peptides (SignalP), and transmembrane elements (TMHMM) for each of the analysed proteins within 183 fungal proteomes. The Main Dataset has been designed to ease further searches with Linux bash commands, for e.g. sorting and subsetting by the aforementioned traits. This resource can be used by users interested in detailed annotation of particular protein families, sets of organisms, low complexity regions, types of proteins (for instance transmembrane proteins). Thanks to its simple and clear format, it may also be easily enriched with additional data.</p> <p>Data types:</p> <p>Main_Dataset.tsv is a TSV table with protein annotations</p> <p>Estimate of dataset size:</p> <p> 245MB<br><br>Readme file:</p> <p>Main_Dataset.tsv is a TSV table with the following columns:</p> <ol> <li> <p>Assembly ID from NCBI</p> </li> <li> <p>Protein ID (NCBI accession)</p> </li> <li> <p>Protein length</p> </li> <li> <p>Presence of protein domains; Boolean</p> </li> <li> <p>symbolic localization of protein domains; 10 bins scaled to sum up to total protein length</p> </li> <li> <p>number of transmembrane elements predicted with TMHMM</p> </li> <li> <p>total length of transmembrane elements</p> </li> <li> <p>Symbolic localization of transmembrane elements; 10 bins scaled to sum up to total protein length</p> </li> <li> <p>Presence of signal peptide; Boolean</p> </li> <li> <p>Total number of LCR</p> </li> <li> <p>Total length of LCR</p> </li> <li> <p>Symbolic localization of LCR; 3 bins: N-termini (0-0.25 of protein length), middle (0.25-0.75 of protein length), and C-term (0.75-1 protein length)</p> </li> <li> <p>Symbolic localization of LCR; 10 bins scaled to sum up to total protein length</p> </li> <li> <p>LCR sequences in the N-terminal part of protein, separated by a comma</p> </li> <li> <p>LCR sequences in the middle part of protein, separated by a comma</p> </li> <li> <p>LCR sequences in the C-terminal part of the protein, separated by a comma</p> </li> <li> <p>Pfam domains overlapping with LCRs (>80% of LCR length)</p> </li> <li> <p>Pfam domains in protein (ordered by domain start)</p> </li> <li> <p>GO terms based on Pfam domains obtained by mapping on pfam2go, separated with the pipe symbol '|'</p> </li> </ol> <p> </p> <p>Acknowledgements</p> <p>This work was supported by National Science Centre grants (#2021/41/B/NZ2/02426 to AM, #2019/35/D/NZ2/03411 to K.S).</p>
Light-activated molecular machines display broad spectrum antibacterial action
<p>TEM images of <em>E. coli</em> treated with 1% DMSO or 0.5x MIC of different visible light-activated molecular machines. Light-activated molecular machines (MM) are synthetic molecular structures that, following light activation, undergo successive unidirectional rotation that results in a drilling-like rapid motion that can thrust the motor through biological membranes. Transmission electron microscopy (TEM) images revealed that treatment of <em>E. coli</em> with 0.5x MIC of different MM (DL-654, DL-877, DL-878) followed by activation with 42.6 J cm<sup>-2</sup> of 405 nm light resulted in substantial changes in cell morphology including the detachment of the inner membrane from the cell wall, damage to peptidoglycan, distortion of the cell surface, and formation of outer membrane vesicles, denoting membrane and periplasmic stress, that were not evident in 1% DMSO-treated and irradiated cells. </p>
The Passenger Experience of Mixed Reality Virtual Display Layouts in Airplane Environments - Participants Questionnaire
<p>Dataset for questionnaire data from the paper "<strong>The Passenger Experience of Mixed Reality Virtual Display Layouts in Airplane Environments</strong>" published at ISMAR 2021</p>
The broken-wing display across birds and the conditions for its evolution
<p>The broken-wing display is a well-known and conspicuous deceptive signal used to protect birds' broods against diurnal terrestrial predators. Although commonly associated with shorebirds, it remains unknown how common the behaviour is across birds and what forces are associated with the evolution of the display. Here, we use the broken-wing display as a paradigmatic example to study the evolution of a behaviour across Aves. We show that the display is widespread: it has been described in 52 families spread throughout the phylogeny, suggesting that it independently evolved multiple times. Further, we evaluated the association with sixteen ecological and life-history variables hypothesized to be related to the evolution of the broken-wing display. Eight variables were associated with the display. We found that species breeding farther from the equator, in more dense environments, with shorter incubation periods and relatively little nest cover were more likely to perform the display, as were those in which only one parent incubates eggs, species that mob nest predators and species that are altricial or multi-brooded. Collectively, our comprehensive approach identified forces associated with the repeated evolution of this conspicuous display, thereby providing new insights into how deceptive behaviours evolve in the context of predator-prey interactions.</p>
Research Data supporting "Pachyrhynchus weevils use 3D photonic crystals with varying degrees of order to create diverse and brilliant displays"
<p>The research data is arranged into different folders containing the following files (.txt, .tif, .xlsx files; <em>italics</em>). This data and the descriptions below should be read in conjunction with the manuscript and “Supporting Info”, both of which may be found at the following DOI: 10.1002/smll.202200592.</p>
Figure 4 Bulbolaelaps bossei n. gen., n in A new genus and species of Digamasellidae (Acari: Mesostigmata) displaying some extraordinary gnathosomal structures
Figure 4 Bulbolaelaps bossei n. gen., n. sp. (female): A and B – Chelicerae; C – Epistome; E – Palp, ventral view; F – Hypostome; G – Tritosternum; (male): D – Epistome; H – Chelicera.
Figure 1 Bulbolaelaps bossei n. gen., n in A new genus and species of Digamasellidae (Acari: Mesostigmata) displaying some extraordinary gnathosomal structures
Figure 1 Bulbolaelaps bossei n. gen., n. sp. (Female): A – Idiosoma, dorsal view; B – Idiosoma, ventral view; C – Peritreme, peritrematal plate, exopodal plate and anterior part of opisthonotal shield.
Figure 2 Bulbolaelaps bossei n. gen., n in A new genus and species of Digamasellidae (Acari: Mesostigmata) displaying some extraordinary gnathosomal structures
Figure 2 Bulbolaelaps bossei n. gen., n. sp. (male): A – Idiosoma, dorsal view; B – Idiosoma, ventral view.
Figure 3 Bulbolaelaps bossei n. gen., n in A new genus and species of Digamasellidae (Acari: Mesostigmata) displaying some extraordinary gnathosomal structures
Figure 3 Bulbolaelaps bossei n. gen., n. sp. (Female): A – Leg I (tarsus not depicted); B – Leg II; C – Leg III; D – Leg IV; (male): E – Leg II.
Figure 5 Bulbolaelaps bossei n. gen., n in A new genus and species of Digamasellidae (Acari: Mesostigmata) displaying some extraordinary gnathosomal structures
Figure 5 Bulbolaelaps bossei n. gen., n. sp. (female): Gnathosoma: A – Bulbous protuberances; B – Epistome; C – Salivary stylets; D – Corniculi; E – Internal malae; Legs: F – tarsi II (right-hand side) and Tarsus III (left-hand side), photomicrographs without scale bar.
Text-fig. 1. Extant Sciadopitys verticillata pollen. a–c: LM images (scale bars 10 µm), a – polar view, b – equatorial view, c – equatorial view with well visible thinning of proximal leptoma; d–e: SEM overview images (scale bar 10 µm), d – distal polar view, e – oblique equatorial view; f – equatorial view with leptoma at top; g–i: SEM detailed images (scale bars 2 µm), g – detail of verrucate, echinate, perforate sexine of distal pol, h – wall break displaying thin nexine and verrucate, echinate sexine, i – ripped open leptoma displaying transition from verrucate sculpturing to nearly psilate state. in The Occurrence Of Pollen Of Sciadopityaceae Luerss. Through Time
Text-fig. 1. Extant Sciadopitys verticillata pollen. a–c: LM images (scale bars 10 µm), a – polar view, b – equatorial view, c – equatorial view with well visible thinning of proximal leptoma; d–e: SEM overview images (scale bar 10 µm), d – distal polar view, e – oblique equatorial view; f – equatorial view with leptoma at top; g–i: SEM detailed images (scale bars 2 µm), g – detail of verrucate, echinate, perforate sexine of distal pol, h – wall break displaying thin nexine and verrucate, echinate sexine, i – ripped open leptoma displaying transition from verrucate sculpturing to nearly psilate state.
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.