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ShareScore release 0.7.1
Dataset results
44 results for “evolutionary landscapes”
Data from: Mapping a systematic ribozyme fitness landscape reveals a frustrated evolutionary network for self-aminoacylating RNA
Open the record for dataset details and reuse information.
EVOLUTIONARY CO-OPTION OF AN ANCESTRAL CLOACAL REGULATORY LANDSCAPE WITH THE EMERGENCE OF DIGITS AND GENITALS [ChIP-seq]
GEO Series GSE250367. Danio rerio; Mus musculus. 3 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Third-party reanalysis.
Developmental and evolutionary comparative analysis of a HoxD regulatory landscape in mammals and birds
GEO Series GSE195592. Gallus gallus; Mus musculus. 46 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
Developmental and evolutionary comparative analysis of a HoxD regulatory landscape in mammals and birds [Hi-C]
GEO Series GSE194423. Gallus gallus; Mus musculus. 2 samples. Type: Other.
EVOLUTIONARY CO-OPTION OF AN ANCESTRAL CLOACAL REGULATORY LANDSCAPE WITH THE EMERGENCE OF DIGITS AND GENITALS
GEO Series GSE250267. Danio rerio; Mus musculus. 34 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other; Expression profiling by high throughput sequencing.
Non-paradoxical evolutionary stability of the recombination initiation landscape in Saccharomycetes
GEO Series GSE71930. Saccharomyces mikatae; Saccharomyces kudriavzevii; Saccharomyces cerevisiae; Saccharomyces paradoxus. 22 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
EVOLUTIONARY CO-OPTION OF AN ANCESTRAL CLOACAL REGULATORY LANDSCAPE WITH THE EMERGENCE OF DIGITS AND GENITALS [HiC-seq re-analysis]
GEO Series GSE250368. Danio rerio. 0 samples. Type: Other; Third-party reanalysis.
The evolutionary landscape of alternative splicing in vertebrate species
GEO Series GSE41338. Anolis carolinensis; Xenopus tropicalis; Gallus gallus; Mus musculus; Tetraodon nigroviridis. 21 samples. Type: Expression profiling by high throughput sequencing.
Evolutionary re-wiring of p63 regulatory landscape has both epigenetic and transcriptomic implications and is the underlying cause for epidermal differences between mouse and human [ChIP-seq]
GEO Series GSE86900. Mus musculus. 10 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Developmental and evolutionary comparative analysis of a HoxD regulatory landscape in mammals and birds [ChIP-seq]
GEO Series GSE194418. Mus musculus; Gallus gallus. 15 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Evolutionary conservation of the eumetazoan gene regulatory landscape
GEO Series GSE46488. Nematostella vectensis. 29 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Real-time Evolutionary Landscape of the Bronchial Epithelium and Corresponding Dynamic Immune Cell Alterations in Lung Squamous Cell Carcinogenesis
GEO Series GSE287159. Rattus norvegicus. 10 samples. Type: Expression profiling by high throughput sequencing.
Evolutionary re-wiring of p63 regulatory landscape has both epigenetic and transcriptomic implications and is the underlying cause for epidermal differences between mouse and human [RNA-seq]
GEO Series GSE86901. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
Repeats mimic pathogen-associated patterns across a vast evolutionary landscape [RIP-Seq]
GEO Series GSE305618. Homo sapiens. 16 samples. Type: Other; Expression profiling by high throughput sequencing.
EVOLUTIONARY CO-OPTION OF AN ANCESTRAL CLOACAL REGULATORY LANDSCAPE WITH THE EMERGENCE OF DIGITS AND GENITALS [RNA-seq]
GEO Series GSE250266. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
Data from: Reconstructing the evolutionary history of an endangered subspecies across the changing landscape of the Great Central Valley of California.
Identifying historic patterns of population genetic diversity and connectivity is a primary challenge in efforts to re-establish the processes that have generated and maintained genetic variation across natural landscapes. The challenge of reconstructing pattern and process is even greater in highly altered landscapes where population extinctions and dramatic demographic fluctuations in remnant populations may have substantially altered, if not eliminated, historic patterns. Here, we seek to reconstruct historic patterns of diversity and connectivity in an endangered subspecies of woodrat that now occupies only 1-2 remnant locations within the highly altered landscape of the Great Central Valley of California. We examine patterns of diversity and connectivity using 14 microsatellite loci and sequence data from a mitochondrial locus and a nuclear intron. We reconstruct temporal change in habitat availability to establish several historical scenarios that could have led to contemporary patterns of diversity, and use an approximate Bayesian computation approach to test which of these scenarios is most consistent with our observed data. We find that the Central Valley populations harbour unique genetic variation coupled with a history of admixture between two well-differentiated species of woodrats that are currently restricted to the woodlands flanking the Valley. Our simulations also show that certain commonly used analytical approaches may fail to recover a history of admixture when populations experience severe bottlenecks subsequent to hybridization. Overall our study shows the strength of combining empirical and simulation analyses to recover the history of populations occupying highly altered landscapes.
EVOLUTIONARY CO-OPTION OF AN ANCESTRAL CLOACAL REGULATORY LANDSCAPE WITH THE EMERGENCE OF DIGITS AND GENITALS [cHiC]
GEO Series GSE250264. Mus musculus. 2 samples. Type: Other.
Data from: Reconstructing the evolutionary history of an endangered subspecies across the changing landscape of the Great Central Valley of California.
Open the record for dataset details and reuse information.
Developmental and evolutionary comparative analysis of a HoxD regulatory landscape in mammals and birds [ATAC-Seq]
GEO Series GSE203031. Gallus gallus; Mus musculus. 12 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Developmental and evolutionary comparative analysis of a HoxD regulatory landscape in mammals and birds [4C-seq]
GEO Series GSE195591. Gallus gallus; Mus musculus. 17 samples. Type: Other.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.