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97
datasets available to search
ShareScore release 0.9.0
Dataset results
97 results for “expression matrix”
Human umbilical cord matrix mesenchymal stem cells suppress the growth of breast cancer by expression of tumor suppressor genes [rat]
GEO Series GSE64838. Rattus norvegicus. 6 samples. Type: Expression profiling by array.
Biofilms of non-tuberculous mycobacteria display distinct expression patterns and form an extracellular matrix
GEO Series GSE144514. Mycobacteroides chelonae. 12 samples. Type: Expression profiling by high throughput sequencing.
Minoxidil alters extracellular matrix gene expression, improving vascular compliance and organ perfusion in a model of chronic vascular stiffness
GEO Series GSE110296. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
The expression profiles of extracellular matrix-related genes in the presence or absence of IL-12, IL-23 or IL-27 as measured with PCR array
GEO Series GSE78838. Homo sapiens. 4 samples. Type: Expression profiling by RT-PCR.
Real-time quantitative PCR analysis of Vegf knockdown on expression of extracellular matrix and adhension molecules in male and female primary murine osteoblasts
GEO Series GSE164735. Mus musculus. 4 samples. Type: Expression profiling by RT-PCR.
Differential Expression of Chemokine and Matrix Re-Modelling Genes Explains Contrasting Schistosoma japonicum-induced Hepatopathology in Murine Models
GEO Series GSE25713. Mus musculus. 24 samples. Type: Expression profiling by array.
The bone transcription factor Osterix controls extracellular matrix and node of Ranvier related gene expression in oligodendrocytes [ChIP-seq]
GEO Series GSE221191. Mus musculus. 3 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
cRel Expression Regulates Distinct Transcriptional and Functional Profiles Driving Fibroblast Matrix Production in Systemic Sclerosis
GEO Series GSE151469. Mus musculus. 14 samples. Type: Expression profiling by high throughput sequencing.
Gene expression analysis of a panel of human fibroblasts that generate an aligned (anisotropic) vs non-aligned extracellular matrix
GEO Series GSE121632. Homo sapiens. 16 samples. Type: Expression profiling by high throughput sequencing.
Integrated Analysis of LncRNA-mRNA Co-Expression in the Extracellular Matrix of Developing Deciduous Teeth in Miniature Pigs
GEO Series GSE122516. Sus scrofa. 9 samples. Type: Expression profiling by high throughput sequencing.
The expression profiles of extracellular matrix-related genes in the presence or absence of EBI3 in the PCR array
GEO Series GSE68649. Homo sapiens. 2 samples. Type: Expression profiling by RT-PCR.
Gene expression signature of carcinoma cell response to extracellular matrix
GEO Series GSE53104. Homo sapiens. 20 samples. Type: Expression profiling by array.
Human umbilical cord matrix mesenchymal stem cells suppress the growth of breast cancer by expression of tumor suppressor genes [human]
GEO Series GSE64827. Homo sapiens. 6 samples. Type: Expression profiling by array.
Gene expression profile of two colorectal cancer HT29 and DLD-1 cell lines cultivated in 2-dimensional or 3-dimensional cell culture enriched with laminin rich extracellular matrix proteins
GEO Series GSE75551. Homo sapiens. 6 samples. Type: Expression profiling by array.
PARP1 binds and regulates expression of extracellular matrix genes in renal tubular epithelial cells [RNA-Seq]
GEO Series GSE157557. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
The invadopodial and cytoskeletal regulator glycine- and cysteine-rich protein 2 induces pro-metastatic matrix metalloproteinase expression in breast cancer cells
GEO Series GSE199822. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Expression patterns of TnAV-6a1 genes in the combination of fat body, Epidermis and tracheal matrix tissues compared to hemolymph viral vesicles.
GEO Series GSE114902. Trichoplusia ni. 26 samples. Type: Expression profiling by high throughput sequencing.
Analysis of extracellular matrix and adhesion molecules expression in ALL cell line
GEO Series GSE18516. Homo sapiens. 4 samples. Type: Expression profiling by array.
Arnica montana stimulates extracellular matrix gene expression in human macrophages differentiated to wound-healing phenotype.
GEO Series GSE77382. Homo sapiens. 10 samples. Type: Expression profiling by high throughput sequencing.
Gene expression and co-expression matrix for diatoms
<p>Supplemental dataset accompanying the paper: Comprehensive and functional analysis of horizontal gene transfer events in diatoms, Vancaester et al. MBE (<a href="https://doi.org/10.1093/molbev/msaa182">https://doi.org/10.1093/molbev/msaa182</a>).</p> <p>This dataset contains the generated gene expression matrix for the diatoms <em>Phaeodactylum tricornutum</em>, <em>Seminavis robusta</em>, <em>Fragilariopsis cylindrus</em> and <em>Thalassiosira pseudonana</em>. Relevant experiments were queried using Curse (Vaneechoutte and Vandepoele 2019), which also allows the user to identify and curate replicates. Next, the atlas was generated using Prose (Vaneechoutte and Vandepoele 2019), which uses the SRA toolkit to download the raw data locally, FastQC (Andrews 2010) to perform quality control and adapter detection, Trimmomatic (Bolger et al. 2014) for automatic read trimming and finally kallisto (Bray et al. 2016) for expression quantification in transcripts per million (TPM). Finally, also the co-expression clusters defined based on the gene expression for <em>Phaeodactylum tricornutum </em>is included.</p> <p>The dataset containing all detected phylogenetic trees of diatom genes of horizontal descent can be found on <a href="https://zenodo.org/record/3889669#.XyB-E-dCdPY">(https://zenodo.org/record/3889669#.XyB-E-dCdPY)</a>.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.