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38
datasets available to search
ShareScore release 0.9.0
Dataset results
38 results for “eye transcriptomes”
Single Cell Transcriptomics Identifies Distinct Choroid Cell Populations Involved in Visually Guided Eye Growth
GEO Series GSE235684. Gallus gallus. 6 samples. Type: Expression profiling by high throughput sequencing.
Mapping gene regulatory networks in Drosophila eye development by large-scale transcriptome perturbations and motif inference [ChIP-Seq]
GEO Series GSE62557. Drosophila melanogaster. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
The transcriptome of rabbit conjunctiva in dry eye disease: Large-scale changes and similarity to the human dry eye
GEO Series GSE171043. Oryctolagus cuniculus. 6 samples. Type: Expression profiling by array.
Transcriptome of sevenless (sev) in the eye imaginal disc.
GEO Series GSE37793. Drosophila melanogaster. 7 samples. Type: Expression profiling by array.
Time series genome-wide transcriptome analysis of mouse eyes kept under different seasonal conditions
GEO Series GSE156141. Mus musculus. 24 samples. Type: Expression profiling by high throughput sequencing.
Comparative Eye Transcriptome Atlas
GEO Series GSE309408. Columba livia; Gallus gallus; Anolis carolinensis; Taeniopygia guttata. 14 samples. Type: Other; Expression profiling by high throughput sequencing.
Next Generation Sequencing Comparison of C57BL/6J and BC027072 -/- Eye Transcriptomes
GEO Series GSE63810. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
Rodent Research-1 (RR1) NASA Validation Flight: Mouse eye transcriptomic and epigenomic data
NASA's Rodent Research (RR) project is playing a critical role in advancing biomedical research on the physiological effects of space environments. Due to the limited resources for conducting biological experiments aboard the International Space Station (ISS), it is imperative to use crew time efficiently while maximizing high-quality science return. NASA's GeneLab project has as its primary objectives to 1) further increase the value of these experiments using a multi-omics, systems biology-based approach, and 2) disseminate these data without restrictions to the scientific community. The current investigation assessed viability of RNA, DNA, and protein extracted from archived RR-1 tissue samples for epigenomic, transcriptomic, and proteomic assays. During the first RR spaceflight experiment, a variety of tissue types were harvested from subjects, snap-frozen or RNAlater-preserved, and then stored at least a year at -80C after return to Earth. They were then prioritized for this investigation based on likelihood of significant scientific value for spaceflight research. All tissues were made available to GeneLab through the bio-specimen sharing program managed by the Ames Life Science Data Archive and included mouse adrenal glands, quadriceps, gastrocnemius, tibialis anterior, extensor digitorum longus, soleus, eye, and kidney. We report here protocols for and results of these tissue extractions, and thus, the feasibility and value of these kinds of omics analyses. In addition to providing additional opportunities for investigation of spaceflight effects on the mouse transcriptome and proteome in new kinds of tissues, our results may also be of value to program managers for the prioritization of ISS crew time for rodent research activities.
Rodent Research-3-CASIS: Mouse eye transcriptomic and proteomic data
The Rodent Research-3 (RR-3) mission was sponsored by the pharmaceutical company Eli Lilly and Co. and the Center for the Advancement of Science in Space to study the effectiveness of a potential countermeasure for the loss of muscle and bone mass that occurs during spaceflight. Twenty BALB/c, 12-weeks old female mice (ten controls and ten treated) were flown to the ISS and housed in the Rodent Habitat for 39-42 days. Twenty mice of similar age, sex and strain were used for ground controls housed in identical hardware and matching ISS environmental conditions. Basal controls were housed in standard vivarium cages. Spaceflight, ground controls and basal groups had blood collected, then were euthanized, had one hind limb removed, and finally whole carcasses were stored at -80 C until dissection. All mice in this data set received only the control/sham injection.
Transcriptome data for comparing gene expressions of goldfish with normal and celestial-eye
GEO Series GSE277233. Carassius auratus. 6 samples. Type: Expression profiling by high throughput sequencing.
Next Generation Sequencing Study of Circadian Changes in Transcriptome of Zebrafish Pineal Gland and Eye
GEO Series GSE99285. Danio rerio. 6 samples. Type: Expression profiling by high throughput sequencing.
Transcriptomic profiling investigating altered cellular pathways upon QKI depletion in mouse eye lens tissue, mouse neural stem cell-derived lens progenitor-like cells (NLPCs), and human lens epitheli
GEO Series GSE145475. Homo sapiens; Mus musculus. 18 samples. Type: Expression profiling by high throughput sequencing.
Evolutionary remodeling of the ventral retina enables aerial vision in the four-eyed fish Anableps anableps [Spatial Transcriptomics]
GEO Series GSE306418. Anableps anableps. 4 samples. Type: Other.
Next generation sequence analysis for transcriptome of Drosophila melanogaster third instar larval eye discs expressing activated Ras either alone or along with changes in hsromega lncRNA levels
GEO Series GSE107529. Drosophila melanogaster. 12 samples. Type: Expression profiling by high throughput sequencing.
Temporal transcriptome changes in Drosophila eye development
GEO Series GSE164079. Drosophila melanogaster. 12 samples. Type: Expression profiling by high throughput sequencing.
Next-generation sequence analysis for transcriptome of Drosophila melanogaster third instar larval eye discs expressing sevenless-GAL4 directed down or up regulated levels of hsromega lncRNAs levels
GEO Series GSE116476. Drosophila melanogaster. 6 samples. Type: Expression profiling by high throughput sequencing.
Transcriptome of Drosophila melanogaster third instar larval eye discs expressing GMR-Gal4>UAS-127Q and Wild type reared on normal food or food supplemented with Amalaki Rasayana (AR) or Rasa-Sindoor
GEO Series GSE140856. Drosophila melanogaster. 6 samples. Type: Expression profiling by high throughput sequencing.
Transcriptome sequencing of normal and lens clouded eyes in the Myodes rufocanus (Sundevall, 1846)
GEO Series GSE231966. Myodes rufocanus. 2 samples. Type: Expression profiling by high throughput sequencing.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.