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30 results for “fungal and bacterial communities”
Soil fauna-microbial interactions complexity triggers shifts in both fungal and bacterial communities under a contamination disturbance
<p>meta.otu.june2020.txt : Willow morphological data, data related to qPCR of PAH-RHD genes and phenanthrene amounts found by GC-MS in soil, associated to the paper entitled: Soil fauna-microbial interactions complexity triggers shifts in both fungal and bacterial communities under a contamination disturbance.</p> <p>Files starting by 16s, its, gn and gp are data tables of bioinformatically processed amplicon sequencing data containing filtered and rarefied counts corresponding to 4 set of genes (16S rRNA gene, fungal ITS, PAH-RHD Gram Negative and Gram Positive bacteria) and corresponding taxonomy. </p>
Data from: Diplogastrellus nematodes are sexually transmitted mutualists that alter the bacterial and fungal communities of their beetle host
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Data from: Unearthing carrion beetles’ microbiome: characterization of bacterial and fungal hindgut communities across the Silphidae
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Data from: Environmental degradation results in contrasting changes in the assembly processes of stream bacterial and fungal communities
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Prescribed fire regimes influence responses of fungal and bacterial communities on new litter substrates in a brackish tidal marsh
<p>Datasets including R code and .csv files of ESV data for fungal and bacterial communities in samples.</p>
Landscape structure of bacterial and fungal community composition in the West Nile Virus vector, Culex tarsalis
<p>Raw sequence data for fungi (ITS1 region) </p>
Data from: Gut bacterial and fungal communities in ground-dwelling beetles are associated with host food habit and habitat
Beetles (Coleoptera) have the highest species diversity among all orders, and they have diverse food habits. Gut microbes may have contributed to this diversification of food habits. Here, we identified the pattern of the relationship between ground-dwelling beetles and their gut microbial communities (bacteria and fungi) in the field. We collected 46 beetle species of five families from secondary deciduous forests and grasslands in Japan and extracted microbial DNA from whole guts for amplicon sequencing. The gut bacterial and fungal communities differed among all habitats and all food habits of their hosts (carnivores, herbivores, omnivores, and scavengers) except for the fungal communities between carnivores and scavengers. Specifically, the abundant bacterial group varied among food habits: Xanthomonadaceae were abundant in scavengers, whereas Enterobacteriaceae were abundant in carnivores and herbivores. Phylogenetically closely related beetles had phylogenetically similar communities of Enterobacteriaceae, suggesting that the community structure of this family is related to the evolutionary change in beetle ecology. One of the fungal groups, Yarrowia species, which has been reported to have a symbiotic relationship with silphid beetles, was also detected from various carnivorous beetles. Our results suggest that the symbiotic relationships between ground-dwelling beetles and these microbes are widespread.
Data from: Gut bacterial and fungal communities in ground-dwelling beetles are associated with host food habit and habitat
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Transcriptomic analyses of bacterial growth on fungal necromass reveals different microbial community niches during degradation
GEO Series GSE268149. Serratia marcescens; Chitinophaga pinensis; Cellvibrio japonicus. 48 samples. Type: Expression profiling by high throughput sequencing.
Landscape structure of bacterial and fungal community composition in the West Nile Virus vector, Culex tarsalis
<p>Raw data sequence for bacteria (16S v3v4 region)</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.