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213 results for “interactive key”
Data from Jenkinson et al. 2020: Biogeographical variation in the distribution, abundance, and interactions among key species on rocky reefs of the northeast Pacific
<p>See Metadata tab for full description of transect survey data.</p>
Data from: MonotomidGen – A matrix-based interactive key to the New World genera of Monotomidae (Coleoptera, Cucujoidea)
A matrix-based Lucid key is presented for the twelve genera of Monotomidae (Coleoptera: Cucujoidea) represented in the New World. A general overview is given for the features and technical specifications of an original interactive key for the identification of these genera. The list of terminal taxa included with the key provides a current summary of monotomid generic diversity for the Nearctic and Neotropical regions.
Data from: Interactions among trees: a key element in the stabilising effect of species diversity on forest growth
1.There is mounting evidence that species diversity increases the temporal stability of forest growth. This stabilising effect of diversity has mainly been attributed to species differences in their response to fluctuating environmental conditions. Interactions among individuals could also contribute to the stabilising effect of diversity by increasing the mean and reducing the variance of tree growth, however, this has never been directly demonstrated. 2.We used tree‐ring width chronologies from temperate and boreal mixed stands of Eastern Canada to identify the role of interactions among individuals in the stabilising effect of diversity on forest growth. Using neighbourhood competition index and a mixed model we compared the effect of interspecific and intraspecific interactions on the mean and the variance of tree growth. 3.We found that interspecific interactions are less detrimental to tree growth than intraspecific interactions. We also found that interspecific interactions buffer tree response to drought and thereby reduce the variance of tree growth. 4.Our results indicate diversity may increase the mean and reduce the variance of tree growth through interactions among individuals. Thus, we demonstrate interactions among individuals play a role in the stabilising effect of diversity on forest growth, and in doing so, we bring to light other mechanisms of the insurance hypothesis.
An interaction between host and microbe genotypes determines colonization success of a key bumble bee gut microbiota member
<p><span>There has been a proliferation of studies demonstrating an organism's health is influenced by its microbiota. However, factors influencing beneficial microbe colonization and the evolution of these relationships remain understudied relative to host-pathogen interactions. Vertically transmitted beneficial microbes are predicted to show high levels of specificity in colonization, including genotype matching, which may transpire through coevolution. We investigate how host and bacterial genotypes influence colonization of a core coevolved microbiota member in bumble bees. The hindgut colonizing </span><i>Snodgrassella alvi</i><span> confers direct benefits, but, as an early colonizer, also facilitates the further development of a healthy microbiota. Due to predominantly vertical transmission promoting tight evolution between colonization factors of bacteria and host lineages, we predict that genotype-by-genotype interactions will determine successful colonization. Germ-free adult bees from seven bumble bee colonies (host genotypic units) were inoculated with one of six genetically distinct strains of </span><i>S. alvi</i><span>. Subsequent colonization within host-genotype and microbe-genotype combinations ranged from zero to one hundred percent, and an interaction between host and microbe genotypes determined colonization success. This novel finding of a genotype-by-genotype interaction determining colonization in an animal host-beneficial microbe system has implications for the ecological and evolutionary dynamics of host and microbe,</span><i> </i><span>including associated host-fitness benefits. </span></p>
FIGURE 2. Exetasis wings. A. E in Description and host interactions of a new species of Exetasis Walker (Diptera: Acroceridae), with a key to species of the genus
FIGURE 2. Exetasis wings. A. E. brasiliensis Carrera; B. E. jujuyensis Gillung sp. nov.; C. E. calida Wiedemann (modified from Wiedemann 1830, plate VII, fig. 2b). Scale line = 1 mm.
FIGURE 7 in Description and host interactions of a new species of Exetasis Walker (Diptera: Acroceridae), with a key to species of the genus
FIGURE 7. Exetasis jujuyensis Gillung sp. nov. larva. A. lateral view; B. dorsolateral view, showing the pair of spiracles; C. dorsal view, showing the cephalic zone.
Carpophiline-ID: An interactive matrix-based key to the carpophiline sap beetles (Coleoptera, Nitidulidae) of Eastern North America
<p>We present Carpophiline-ID, a matrix-based Lucid<sup>TM</sup> key, for the adult stage of the known species of Carpophilinae (<em>Coleoptera: Nitidulidae</em>) of North America, east of the Mississippi River. We provide an overview of the features and technical specifications used to build the key. The list of terminal taxa used in the key represents the most current regional account for Carpophilinae, a beetle subfamily of agricultural and ecological importance. We discuss the value of matrix-based, free access keys for the identification of difficult taxa.</p>
Supplementary material 1 from: Rousse P, van Noort S (2014) Afrotropical Ophioninae (Hymenoptera, Ichneumonidae): an update of Gauld and Mitchell's revision, including two new species and an interactive matrix identification key. ZooKeys 456: 59-73. https://doi.org/10.3897/zookeys.456.8140
Afrotropical Ophioninae: coordinates of the new distribution records.: Explanation note: Summary of the collection localities and their geographical data listed as new distribution records for Afrotropical Ophioninae
Supplementary material 1 from: Agrain F (2014) An interactive multi-entry key to the species of Megalostomis Chevrolat, with description of a new species from Paraguay (Chrysomelidae, Cryptocephalinae). ZooKeys 425: 59-69. https://doi.org/10.3897/zookeys.425.7631
Key to the species of Megalostomis v.1.0, LIF3 file: Explanation note: This XML-based format allows exchange of the key with other key developers.
Supplementary material 2 from: Agrain F (2014) An interactive multi-entry key to the species of Megalostomis Chevrolat, with description of a new species from Paraguay (Chrysomelidae, Cryptocephalinae). ZooKeys 425: 59-69. https://doi.org/10.3897/zookeys.425.7631
Key to the species of Megalostomis v.1.0, SDD file: Explanation note: This is a XML-based file structured using the internationally agreed SDD (Structure of Descriptive Data) Schema. This SDD file may be used to exchange the Lucid key with other SDD-compliant applications.
Supplementary material 1 from: Cherman MA, Mise KM, Morón MA, Vaz-de-Mello FZ, Almeida LM (2017) A taxonomic revision of Liogenys occurring in Brazil with an interactive key and remarks on New World Diplotaxini (Coleoptera, Melolonthidae). ZooKeys 699: 1-120. https://doi.org/10.3897/zookeys.699.12031
Supplementary material 1 from: Cherman MA, Mise KM, Morón MA, Vaz-de-Mello FZ, Almeida LM (2017) A taxonomic revision of Liogenys occurring in Brazil with an interactive key and remarks on New World Diplotaxini (Coleoptera, Melolonthidae). ZooKeys 699: 1-120. https://doi.org/10.3897/zookeys.699.12031
3I Interactive Keys and Taxonomic Databases: Deltocephalinae
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3I Interactive Keys and Taxonomic Databases: Cicadellinae
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3I Interactive Keys and Taxonomic Databases: Typhlocybinae
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FIGURE 1 in An interactive identification key for genets and oyans (Carnivora, Viverridae, Genettinae, Genetta spp. and Poiana spp.) using Xper²
FIGURE 1. Xper² interface showing the three columns with adjustable labels: (left) identification procedure, with character partitions ("Groups"), characters ("Descriptors"), character states ("States") and characters used ("Description in progress"); (central) contextual information on taxa and characters, with "Definition" and "Images"; (right) list of "Remaining taxa" and "Dismissed taxa".
FIGURE 4. Interactive identification key. A in Enabling comparisons of characters using an Xper2 based knowledge-base of fern morphology
FIGURE 4. Interactive identification key. A: List of descriptors sorted according to their discriminant power. B: Definition of the selected descriptor. C: List of states for the selected descriptor. D: Illustration of the different descriptor states. E: List of the discarded taxa during the process of identification. F: List of the remaining taxa, still candidate to be identified. G: Identified taxon displayed at the end of the identification process.
Data from: Uncovering key metabolic determinants of the drug interactions between trimethoprim and erythromycin in Escherichia coli
<p>Understanding interactions between antibiotics used in combination is an important theme in microbiology. Using the interactions between the antifolate drug trimethoprim and the ribosome-targeting antibiotic erythromycin in <em>Escherichia coli </em>as a model, we applied a transcriptomic approach for dissecting interactions between two antibiotics with different modes of action. When trimethoprim and erythromycin were combined, the transcriptional response of genes from the sulfate reduction pathway deviated from the dominant effect of trimethoprim on the transcriptome. We successfully altered the drug interaction from additivity to suppression by increasing the sulfate level in the growth environment and identified sulfate reduction as an important metabolic determinant that shapes the interaction between the two drugs. Our work highlights the potential of using prioritization of gene expression patterns as a tool for identifying key metabolic determinants that shape drug-drug interactions. We further demonstrated that the sigma factor-binding protein gene crl shapes the interactions between the two antibiotics, which provides a rare example of how naturally occurring variations between strains of the same bacterial species can sometimes generate very different drug interactions.</p>
Data from: An interactive key to Central European species of the Pteromalus albipennis species group and other species of the genus (Hymenoptera: Chalcidoidea: Pteromalidae), with the description of a new species
<p>Here we provide the complete set of files used by <a href="https://doi.org/10.3897/BDJ.6.e27722">Klimmek and Baur (2018</a>, see References section below for the complete citation) for constructing the Xper3 key. In particular, we provide the following documents:</p> <p>- Pteromalus_albipennis_group-Xper3_key_CSV_file_C31EBC58D7853C45B9CEC06C6BEF7104.csv: Data matrix of morphologic characters in CSV file format.</p> <p>- Pteromalus_albipennis_group-Xper3_key_SDD_file_C31EBC58D7853C45B9CEC06C6BEF7104.xperience.sdd.xml: Data matrix of morphologic characters in SDD/XML file format.</p> <p>- Pteromalus_albipennis_group_Xper3_key_IMAGES.zip: Complete set of images, grouped according to the original folder structure as used by the Xper3 software. File names correspond to those used in the SDD/XML file.</p> <p>- Xper3_Image__File_name.jpg: All images are also listed individually. File names after the prefix "Xper3_Image__" correspond to those used in the SDD/XML file. NOTE: Even though file names include species names, the latter appear not in a very consistent format (sometimes they appear at the beginning of a file name, sometimes at the end, with genus name or without, etc.). For those looking for all images of a particular species, download and unpack the ZIP file and go to the folder "items". There, images are group together according to species names.</p> <p> </p> <p><strong>Citation of this package</strong><br> Use the citation provided by Zenodo (on this webpage).</p> <p><strong>Contact</strong><br> <a href="https://www.nmbe.ch/en/hannes.baur">Hannes Baur, Natural History Museum Bern, Switzerland</a></p>
FIGURE 1 in A new group of species of the genus Megalothorax (Collembola, Neelidae) with Gondwanan distribution, and introducing an open interactive identification key of Megalothorax species
FIGURE 1. Megalothorax anterolenis sp. nov. (A) Chaetotaxy of trunk tergites from Th. I to Abd. IV, with representation of the secondary granulation. (B, C, D) Head, (B) dorsal side including labrum and maxillary palp, (C) ventral side including labium basal fields, (D) variant morphology of the connection between linea ventralis and integumentary channels.
FIGURE 6 in A new group of species of the genus Megalothorax (Collembola, Neelidae) with Gondwanan distribution, and introducing an open interactive identification key of Megalothorax species
FIGURE 6. Megalothorax zealanterolenis sp. nov. (A) Chaetotaxy of trunk tergites from Th. I to Abd. V, (B) Head dorsal side. (C) Mandibula. (D) Antenna.
ScienceDex guides
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.