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59 results for “mitochondrial COI”
Figure 4 in Molecular characterisation of leeches (Clitellata, Annelida) based on the mitochondrial cytochrome oxidase I (COI) gene region for Turkish fauna
Figure 4. Maximum likelihood phylogeny for Helobdella species based on COI sequences. Bootstrap values are shown for 1000 replicates.
Figure 2 in Molecular characterisation of leeches (Clitellata, Annelida) based on the mitochondrial cytochrome oxidase I (COI) gene region for Turkish fauna
Figure 2. Maximum likelihood phylogeny for Glossiponia species based on COI sequences. Bootstrap values are shown for 1000 replicates.
Fig. 2 in Pauesia species (Hymenoptera: Braconidae: Aphidiinae) attacking Eulachnini aphids (Hemiptera: Aphididae: Lachninae) on coniferous plants in Lithuania: ecological and mitochondrial COI diversity
Fig. 2 Haplotype networks of Pauesia species attacking Eulachnini aphids in Lithuania based on partial COI fragment
Figure 6 in A new species of Cistopus Gray, 1849 (Cephalopoda: Octopodidae) from the East and South China Seas and phylogenetic analysis based on the mitochondrial COI gene
Figure 6. The phylogenetic tree based on cytochrome c oxidase type I (COI) gene data. Numbers in bold face above branches are maximum likelihood/neighbour joining/maximum parsimony bootstrap support values (1000 replicates). Asterisk indicates bootstrap values less than 50%. Sepioteuthis lessoniana was used as distant outgroup species.
Figure 2 in A new species of Cistopus Gray, 1849 (Cephalopoda: Octopodidae) from the East and South China Seas and phylogenetic analysis based on the mitochondrial COI gene
Figure 2. Cistopus chinensis sp. nov. (A) Funnel organ, OUC-XKS021, male, 57.3 mm DML, scale bar 1 mm; (B) radula, OUC-XKS013, male, 75.6 mm DML, scale bar 100 µm; (C) distal end of hectocotylized arm, lateral view, OUC-XKS024, male, 43.2 mm DML, scale bar 1 mm; (D) stylet, OUC-XKS016, female, 56.3 mm DML, scale bar 5 mm; (E) digestive system, OUC-XKS021, male, 57.3 mm DML, scale bar 50 mm. Abbreviations: a, anus; asg, anterior salivary gland; bm, buccal mass; c, caecum; cd, crop diverticulum; cr, crop; dg, digestive gland; i, intestine; is, ink sac; o, oesophagus; psg, posterior salivary gland; s, stomach.
Figure 5 in A new species of Cistopus Gray, 1849 (Cephalopoda: Octopodidae) from the East and South China Seas and phylogenetic analysis based on the mitochondrial COI gene
Figure 5. Cistopus chinensis sp. nov.. (A,C) OUC-XKS-WH001, 71.8 mm DML male; (B) OUC-XKS015, 59.2 mm DML female. (D,E) obtained from hatching pond indoors. (A) Male reproductive tract, scale bar 10 mm; (B) reproductive system of female, scale bar 10 mm; (C) spermatophore, scale bar 5 mm; (D) egg cluster; (E) single laid egg (length = 13.0 mm). Abbreviations: ag, accessory gland; do, distal oviduct; ea, ejaculatory apparatus; f, filament; mg, mucilaginous gland; o, ovary; og, oviducal gland; sr, sperm reservoir; ss, spermatophore storage sac; t, testis; to, terminal organ; vd, vas deferens.
Figure 1 in A new species of Cistopus Gray, 1849 (Cephalopoda: Octopodidae) from the East and South China Seas and phylogenetic analysis based on the mitochondrial COI gene
Figure 1. Cistopus chinensis sp. nov. Dorsal (left) and ventral view (right) of whole animal, holotype (CMRC-XKS-0908026, male, 96 mm DML).
Figure 4 in A new species of Cistopus Gray, 1849 (Cephalopoda: Octopodidae) from the East and South China Seas and phylogenetic analysis based on the mitochondrial COI gene
Figure 4. Cistopus chinensis sp. nov. (A–C) OUC-XKS-WH002, male (mature), 83.0 mm DML, scale bar 5 mm: (A) upper beak, lateral view; (B) lower beak, top view; (C) lower beak, lateral view. (D,E) Scanning electron micrographs of the radula, scale bar 100 µm: (D) OUC-XKS014, female, 63.2 mm DML; (E) OUC-XKS013, male, 76.5 mm DML.
Figure 3 in A new species of Cistopus Gray, 1849 (Cephalopoda: Octopodidae) from the East and South China Seas and phylogenetic analysis based on the mitochondrial COI gene
Figure 3. Cistopus chinensis sp. nov. (A) Hectocotylus, lateral view, OUC-XKS024, male, 43.2 mm DML, scale bar 1 mm; (B) enlarged suckers (see arrows), OUC-XKS007, male, 56.5 mm DML, scale bar 10 mm, (C) mucous pouch (see arrows), OUC-XS020, female, 49.8 mm DML, scale bar 10 mm; (D) mucous pouch (see arrows), OUC-XKS021, male, 57.3 mm DML, scale bar 10 mm; (E) live animal just caught from Putian, Fujian Province.
Data from: Mitochondrial DNA (COI) analyses reveal that amphipod diversity is associated with environmental heterogeneity in deep-sea habitats
Open the record for dataset details and reuse information.
Data from: A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish gut contents
Open the record for dataset details and reuse information.
Figure 3 from: Raupach MJ, Rulik B, Spelda J (2022) Surprisingly high genetic divergence of the mitochondrial DNA barcode fragment (COI) within Central European woodlice species (Crustacea, Isopoda, Oniscidea). ZooKeys 1082: 103-125. https://doi.org/10.3897/zookeys.1082.69851
Figure 3 Subtree of the Neighbor-joining topology based on Kimura 2-parameter distances of all analyzed specimens of Platyarthrus hoffmannseggii Brandt, 1833 and nearest neighbor. Branches with specimen ID-number from BOLD and sample localities. Numbers next to internal nodes are non-parametric bootstrap values (in %) with values higher than 80. BIN values are based on the barcode analysis from 05-06-2020. The isopod drawing by Christian Schmidt was obtained from Raupach (2005).
Supplementary material 2 from: Raupach MJ, Rulik B, Spelda J (2022) Surprisingly high genetic divergence of the mitochondrial DNA barcode fragment (COI) within Central European woodlice species (Crustacea, Isopoda, Oniscidea). ZooKeys 1082: 103-125. https://doi.org/10.3897/zookeys.1082.69851
Neighbor-joining topology
Supplementary material 1 from: Raupach MJ, Rulik B, Spelda J (2022) Surprisingly high genetic divergence of the mitochondrial DNA barcode fragment (COI) within Central European woodlice species (Crustacea, Isopoda, Oniscidea). ZooKeys 1082: 103-125. https://doi.org/10.3897/zookeys.1082.69851
Barcode analysis using the BOLD workbench
Figure 1 from: Raupach MJ, Rulik B, Spelda J (2022) Surprisingly high genetic divergence of the mitochondrial DNA barcode fragment (COI) within Central European woodlice species (Crustacea, Isopoda, Oniscidea). ZooKeys 1082: 103-125. https://doi.org/10.3897/zookeys.1082.69851
Figure 1 Various woodlouse species of Germany AOniscus asellus Linnaeus, 1758 BArmadillidium nasatum Budde-Lund, 1885 CTrachelipus ratzeburgii (Brandt, 1833) DMesonicus alpicola (Heller, 1858) EPhiloscia muscorum (Scopoli, 1763) FHaplophthalmus mariae Strouhal, 1953 GArmadillidium opacum (C. Koch, 1841) HPlatyarthrus hoffmannseggii Brandt, 1833. Scale bar: 1 mm. Photograph credits: A–G Jörg Spelda H Armin Rose.
Supplementary material 3 from: Raupach MJ, Rulik B, Spelda J (2022) Surprisingly high genetic divergence of the mitochondrial DNA barcode fragment (COI) within Central European woodlice species (Crustacea, Isopoda, Oniscidea). ZooKeys 1082: 103-125. https://doi.org/10.3897/zookeys.1082.69851
Neighbor-joining topology of the BOLD workbench including BIN analysis
Figure 2 from: Raupach MJ, Rulik B, Spelda J (2022) Surprisingly high genetic divergence of the mitochondrial DNA barcode fragment (COI) within Central European woodlice species (Crustacea, Isopoda, Oniscidea). ZooKeys 1082: 103-125. https://doi.org/10.3897/zookeys.1082.69851
Figure 2 Neighbor-joining (NJ) topology of the analyzed isopod species based on Kimura 2-parameter distances. Triangles show the relative number of individual's sampled (height) and sequence divergence (width). Red triangles highlight terrestrial species with intraspecific maximum pairwise distances > 2.2%, whereas dark blue triangles indicate freshwater species with such distances. Numbers next to nodes represent non-parametric bootstrap values > 90% (1,000 replicates). Asterisks indicate species not recorded in Germany.
Figure 7 from: Mitrović M, Tomanović Ž (2018) New internal primers targeting short fragments of the mitochondrial COI region for archival specimens from the subfamily Aphidiinae (Hymenoptera, Braconidae). Journal of Hymenoptera Research 64: 191-210. https://doi.org/10.3897/jhr.64.25399
Figure 7 Scheme with overview of PCR attempts to recover the barcoding region of cytochrome c oxidase subunit I with novel primers from archival specimens from the genera Aphidius, Praon, Lysiphlebus, Ephedrus and Monoctonus. Primer pairs coloured red were used in direct PCR; black coloured primers were used in secondary nested reactions. Positions where short fragments within the subsequences overlap are marked with a pattern.
Figure 3 from: Mitrović M, Tomanović Ž (2018) New internal primers targeting short fragments of the mitochondrial COI region for archival specimens from the subfamily Aphidiinae (Hymenoptera, Braconidae). Journal of Hymenoptera Research 64: 191-210. https://doi.org/10.3897/jhr.64.25399
Figure 3 Agarose gel visualizing the products of direct PCR in initial trials testing the novel primers with fresh Praon samples. Three direct PCR reactions were conducted with primer pairs: 1. LCO1490/Pr1Rd, 2. Pr2Fd/Pr2Rd, 3. Pr3Fd/HCO2198. The species included in trials are PF1- P. volucre, PF2- P. dorsale, PF3- P. abjectum; M – marker.
Figure 6 from: Mitrović M, Tomanović Ž (2018) New internal primers targeting short fragments of the mitochondrial COI region for archival specimens from the subfamily Aphidiinae (Hymenoptera, Braconidae). Journal of Hymenoptera Research 64: 191-210. https://doi.org/10.3897/jhr.64.25399
Figure 6 Agarose gel visualizing the products of nested trials with products of direct PCR for samples LD8 – L. confusus, LD9 – L. desertorum; LD12 – L. fabarum; and LD13 – L. alpinus. The products of LD8 and LD9 from PCR with LCO1490/Lys1Rd were submitted to secondary reactions combining two primer pairs, viz., 1. LCO1490/Lys1Rn; and 2. Lys1Fn/Lys1Rd. Amplicons of LD8, LD9 and LD12 obtained with Aph2Fd/Lys2Rd were submitted to secondary nested trials with primer pairs Aph2Fd/Lys2Rn and Lys2Fn/Lys2Rd. Products from direct PCR with Lys3Fd/HCO2198 were used as the template for nested reactions with Lys3Fd/Aph3Rn and Lys3Fn/HCO2198.
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