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FIGURE 15. Hungarosoma bokori Verhoeff, 1928 in Hungarosoma bokori Verhoeff, 1928 (Diplopoda: Chordeumatida): new insights into its taxonomy, systematics, molecular genetics, biogeography and ecology
FIGURE 15. Hungarosoma bokori Verhoeff, 1928, male, gonopods (Abaliget Cave). Anterior view (right side of pair structures is slightly turned laterally). Abbreviations: Letters a – h signal equivalent structures in both views. Anterior gonopods (legs 8): a = cheirite, b = brush-like arm, c = additive divided arm, d = hyaline process. Posterior gonopods (legs 9): e = gonopod, f = ventral hyaline prominence, g = claw shape process with long seta.
FIGURE 1. Hungarosoma bokori Verhoeff, 1928 in Hungarosoma bokori Verhoeff, 1928 (Diplopoda: Chordeumatida): new insights into its taxonomy, systematics, molecular genetics, biogeography and ecology
FIGURE 1. Hungarosoma bokori Verhoeff, 1928, female, sampled at the entrance of the Baradla Cave, Hungary, 21. iii. 2013. Photo: Ľubomír Kováč & Andrej Mock.
Fig. 3 in A New Species of Bathyal Nemertean, Proamphiporus kaimeiae sp. nov., off Tohoku, Japan, and Molecular Systematics of the Genus (Nemertea: Monostilifera)
Fig. 3. Proamphiporus kaimeiae sp. nov., holotype, ICHUM 6058, photomicrographs of transverse sections. A, Body wall in brain region; B, anterior part of cerebral organs; arrowheads pointing to the radial canal; C, posterior part of cerebral organs; arrowhead pointing to the lateral canal; D, brain; arrowhead pointing to vascular plug; E, proboscis; F, testis; G, excretory collecting tubule (arrowhead). Abbreviations: ag, acidophilic glands; br, brain; de, dermis; dg, dorsal ganglion; ep, epidermis; ln, lateral nerve cord; mlm, middle longitudinal muscle layer of body wall; ocm, outer circular muscle layer of body wall; pb, proboscis; pe, proboscis epithelium; pic, proboscis inner circular muscle layer; poc, proboscis outer circular muscle layer; rh, rhynchocoel; st, stomach; te, testis; vg, ventral ganglion. Scale bars: A = 20 µm, B = 75 µm, C, G = 50 µm, D = 100 µm, E, F = 40 µm.
Fig. 2 in A New Species of Bathyal Nemertean, Proamphiporus kaimeiae sp. nov., off Tohoku, Japan, and Molecular Systematics of the Genus (Nemertea: Monostilifera)
Fig. 2. Proamphiporus kaimeiae sp. nov., holotype, ICHUM 6058, photographs taken in living state. A, Whole body, dorsal view; B, ventral view. Abbreviations: cf, cephalic furrow; co, cerebral organ. Scale bar: 500 µm.
Fig. 1 in A New Species of Bathyal Nemertean, Proamphiporus kaimeiae sp. nov., off Tohoku, Japan, and Molecular Systematics of the Genus (Nemertea: Monostilifera)
Fig. 1. Map showing the collection site (solid circle) of the specimen examined in the present study.
Fig. 4 in A New Species of Bathyal Nemertean, Proamphiporus kaimeiae sp. nov., off Tohoku, Japan, and Molecular Systematics of the Genus (Nemertea: Monostilifera)
Fig. 4. Phylogenetic trees of the genus Proamphiporus based on concatenated 16S rRNA (454 bp), COI (657 bp), 18S rRNA (1773 bp), 28S rRNA (1077 bp), and histone H3 genes (326 bp). A, Phylogenetic tree inferred by maximum likelihood (ML) analysis, showing support values generated by a separate partitioned ML bootstrap analysis with 1000 replicates; B, phylogenetic tree inferred from Bayesian analysis, showing posterior probability of a separate partitioned Bayesian analysis.
Fig. 3. Phylogenetic trees obtained from a concatenated dataset with a in Molecular Systematics and Morphological Analyses of the Subgenus Setihenricia (Echinodermata: Asteroidea: Henricia) from Japan
Fig. 3. Phylogenetic trees obtained from a concatenated dataset with a total length of 1,277 bp, consisting of seven mitochondrial genes (16S, tRNA-Ala, tRNA-Leu, tRNA-Asn, tRNA-Gln, tRNA-Pro, and COI). The trees were built based on maximum likelihood (ML, left) and Bayesian inference (BI, right). Values at nodes indicate bootstrap scores from ML and posterior probabilities from BI. Outgroups are only shown in the ML tree with both the support values. Scale bars indicate the number of nucleotide substitutions per site. OTUs sequenced in this study are in bold face. Each letter in parentheses after non-bold OTUs denotes the source: C, Chichvarkhin (2017b); F, Foltz and Rocha- Olivares (unpublished); K, Knott et al. (2018); L, Lopes et al. (2016); M, Matsubara et al. (2004); W, Wada et al. (1996). Circles indicate species listed as Setihenricia in Chichvarkhin and Chichvarkhina (2017). Triangles indicate species morphologically identified as Setihenricia in this study (see Fig. 4A).
Fig. 2 in Molecular Systematics and Morphological Analyses of the Subgenus Setihenricia (Echinodermata: Asteroidea: Henricia) from Japan
Fig. 2. Measurements (morphometrics) of four kinds of ossicles of Henricia nipponica (Oshoro): A, dorsal spine (DS); B, adambulacral spine (AdS); C, adambulacral plate (AdP), proximal view; D, ambulacral plate (AmP), proximal view.
Fig. 5 in Molecular Systematics and Morphological Analyses of the Subgenus Setihenricia (Echinodermata: Asteroidea: Henricia) from Japan
Fig. 5. Side views of the arms of Henricia nipponica (Oshoro) (A, B) and Henricia tumida (C, D). A, C, Lower magnification; B, D, higher magnification of the rectangle on A and C, respectively. The number of the rows of spines on the inferomarginal plate can be interpreted as either two (solid line), two or three (dashed line), or three (dotted line). Scale bars indicate 1 mm.
Fig. 1 in Molecular Systematics and Morphological Analyses of the Subgenus Setihenricia (Echinodermata: Asteroidea: Henricia) from Japan
Fig. 1. Sampling locations of Henricia (circle) and Echinaster (square) specimens around Japan. (1) Off Abashiri, Hokkaido; H. sp. 2 (Abashiri 1), H. sp. 3 (Abashiri 2); (2) Oshoro, Hokkaido; H. nipponica (Oshoro), H. ohshimai (Oshoro); (3) Off Iwanai, Hokkaido; H. reniossa; (4) Akkeshi, Hokkaido; H. reticulata, H. tumida, H. sp. 1 (Akkeshi); (5) Muroran, Hokkaido; H. nipponica (Muroran); (6) Off Iwate; H. hayashii; (7) Off Miyagi; H. kinkasana; (8) Off Fukushima; H. sp. 4 (Fukushima); (9) Misaki, Kanagawa; H. ohshimai (Misaki); (10) Iki Island, Nagasaki; H. regularis; (11) Okinoerabu Island, Kagoshima; H. sp. 8 (Okinoerabu); (12) Iheya Island, Okinawa; E. sepositus; (13) Okinawa Island, Okinawa; H. sp. 5 (Okinawa); (14) Nagannu Island, Okinawa; H. sp. 7 (Nagannu); (15) Aka Island, Okinawa; E. callosus; (16) Miyako Island, Okinawa; H. sp. 6 (Miyako); (17) Iriomote Island, Okinawa; E. luzonicus.
Fig. 4 in Molecular Systematics and Morphological Analyses of the Subgenus Setihenricia (Echinodermata: Asteroidea: Henricia) from Japan
Fig. 4. Morphological characters which might be useful to distinguish Setihenricia species from non-Setihenricia species. A, number of rows of spines on each inferomarginal plate; B, SEM images of AdP; C, AdPwidth; D, SEM images of AmP; E, photographs of entire body; F, ratios of AmPwidth/AmPneck/r. See Table 4for abbreviations. Circles on boxplots (A, C, and F) indicate outliers. Specimens that show three (indicated by a vertical dashed line on A) or more rows of the spines can be identified as Setihenricia (Chichvarkhin and Chichvarkhina 2017). Enlarged images of B, D, and E are available in the figshare repository (Wakita et al. 2019).
Fig. 6 in Molecular Systematics and Morphological Analyses of the Subgenus Setihenricia (Echinodermata: Asteroidea: Henricia) from Japan
Fig. 6. Morphological characters representing the degree of tapering of spines. A, SEM images of DS; B, ratios of DSbase/DStip; C, SEM images of AdS; D, ratios of AdSbase/AdStip. See Table 4for abbreviations. Circles on boxplots (B and D) indicate outliers. On B and D, a value above one (indicated by a vertical dashed line) can be interpreted that the spine is tapered. Enlarged images of A and C are available in the figshare repository (Wakita et al. 2019).
Molecular data from "Between a rock and a dry place: phylogenomics, biogeography, and systematics of ridge-tailed monitors (Squamata: Varanidae: Varanus acanthurus complex)"
<p><strong>Phylogenetic_dataset.csv</strong>: Unfiltered DArTseq data used in phylogenetic analyses. Readable by 'dartR' (Gruber et al. 2018).</p> <p><strong>Population_dataset.csv</strong>: Unfiltered DArTseq data used in population-level analyses. Readable by 'dartR' (Gruber et al. 2018).</p> <p><strong>Reference.csv</strong>: Spreadsheet listing individuals included in molecular analyses. Includes vouchers, species, name of each sample in DArTseq data sets, and GenBank accession numbers (GB) for mitochondrial data. ABTC stands for Australian Biological Tissue Collection; AA and CCM for field numbers of uncatalogued specimens. Other collection acronyms follow Sabaj (2019). We refrain from assigning individuals that were not included in the molecular analyses to any given species.</p>
Figure 5 in Molecular systematics of the Dendrolagus goodfellowi species group (Marsupialia: Macropodidae)
Figure 5. ML tree showing phylogenetic relationships amongst mtDNA sequences from six sampled Goodfellow's group taxa. Percentage bootstrap support is indicated.
Figure 6 in Molecular systematics of the Dendrolagus goodfellowi species group (Marsupialia: Macropodidae)
Figure 6. Comparison of pelage variation across taxa in the Goodfellow's group. Left to right: D. g. buergersi (AM M.17213), D. g. goodfellowi (AM M D. matschiei (AM M.6062), and D. spadix (AM M.17212).
Figure 4 in Molecular systematics of the Dendrolagus goodfellowi species group (Marsupialia: Macropodidae)
Figure 4. AM M.5418, the holotype cranium and dentaries of D. deltae Troughton & Le Souef 1936. An image of this specimen has not previously
Figure 3 in Molecular systematics of the Dendrolagus goodfellowi species group (Marsupialia: Macropodidae)
Figure 3. AM M.5418 the holotype study skin of D. deltae Troughton & Le Souef 1936. An image of this specimen has not previously been published.
Figure 2 in Molecular systematics of the Dendrolagus goodfellowi species group (Marsupialia: Macropodidae)
Figure 2. Distribution of Dendrolagus taxa of the Goodfellow's group in New Guinea, with sampling sites indicated.
Figure 1 in Molecular systematics of the Dendrolagus goodfellowi species group (Marsupialia: Macropodidae)
Figure 1. AM M.4561, holotype flat skin of D. spadix Troughton & Le Souef 1936. An image of this specimen has not previously been published.
Fig. 7 in Systematic Studies on the Hypotrich Ciliate, Tachysoma pellionellum (Müller, 1773) Borror, 1972 (Protozoa, Ciliophora) Based on Integrative Analyses: Morphology, Morphogenesis and Molecular Phylogeny
Fig. 7. Maximum likelihood (ML) phylogenetic tree based on the small subunit rRNA (SSU rRNA) gene sequences. Numbers at the nodes represent the bootstrap values of ML analyses and posterior probability of BI analyses. Fully supported (100%/1.00) branches are marked with solid circles. Asterisk (*) represents support values less than 50% and the disagreement between BI and the reference ML tree. The scale bar corresponds to two substitutions per 100 nucleotide positions. The newly sequenced species in the present study is shown in bold.
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Allen Brain Atlas
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Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
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