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Tropical range extending herbivorous fishes gain foraging benefits by shoaling with native temperate species
<p>Data1.csv contains the data to analyze the abundance of fish herbivore individuals as a function of the species and the type of shoal. </p> <p>Data2.xlsx contains the data to analyze the foraging activity of the herbivorous fish found in our study. We explored the relationship between bite rates per fish min-1 and the species, shoal type and shoal size. </p> <p>Data3.xlslx contains the data to analyze the shoaling configurations based on species origin. </p> <p>Minguito-Frutos_etal.R contains the R reproducible code to run all the analyses carried out in this study. </p> <p>Species_coocurrence_based_associations.R contains the reproducible R code to run the analyses to explore the strength of mixed-species associations between herbivorous fish. </p> <p>-------------------------------------------------------------------------------------------------------------------------------------------</p> <p>Data1.csv, Data2.xlsx, Data3.xlslx, and Minguito-Frutos_etal.R contains the data and code used before submitting this work. </p> <p>-------------------------------------------------------------------------------------------------------------------------------------------<br><br>Minguito_Frutos_etal2025_SR_Rscript, Data_Rev_SR, and Data2_Rev_SR contain the data and code derived from the last submission to Scientific Reports. In this latest version, we modified our analyses of fish foraging activity that now evaluate: (i) the frequency and size of mixed-species shoals based on the origin of the species examined (using data in Data2_Rev_SR), (ii) the strength of pair-wise associations between native and range-expanding species (using Species_coocurrence_based_associations.R), and (iii) how the foraging activity of native and range-extending fishes was shaped by the composition and size of the shoals (using data in Data_Rev_SR). </p>
Figure 2 in Characterization of Eugenia uniflora accessions: a native species with great commercial potential in America
Figure 2. Collection sites of the 40 Surinam Cherry accessions in the state of Rio Grande do Sul with the cluster according to genetic similarity obtained with RAPD markers. Group I =; Group II =; Group III =).
Figure 1 in Characterization of Eugenia uniflora accessions: a native species with great commercial potential in America
Figure 1. Dendrogram of genetic similarity between the 40 Surinam Cherry, obtained from RAPD markers. The line indicates the 84% cut-off point based on the average similarity between populations.
Fig. 3 in Report of a Feather Mite Species (Acariformes: Astigmata) from the Oriental White Stork, Ciconia boyciana (Ciconiiformes: Ciconiidae), Belonging to the Japanese Native Population
Fig. 3. Pelargolichus orientalis, male (A) and female (B). A, right setae se and si on prodorsal shield, dorsal view; B, posterior part of hysterosoma, dorsal view. Scale bars: 10 µm.
Fig. 1 in Report of a Feather Mite Species (Acariformes: Astigmata) from the Oriental White Stork, Ciconia boyciana (Ciconiiformes: Ciconiidae), Belonging to the Japanese Native Population
Fig. 1. The taxidermy specimen of the Oriental White Stork Ciconia boyciana sampled in Toyooka City, Hyogo Prefecture, Japan.
Data from: Chrysolaena obovata, A SPECIES NATIVE OF BRAZILIAN CERRADO: GENETIC DIVERSITY AND STRUCTURE OF NATURAL POPULATIONS AND POTENTIAL FOR INULIN PRODUCTION
<p><em>Chrysolaena obovata</em> (Less.) M. Dematteis, an herbaceous Asteraceae species widely distributed across different Brazilian Cerrado physiognomies, has underground organs, named rhizophores, that accumulate high concentrations of inulin-type fructans. These carbohydrates are recognized as beneficial soluble fibers for human health and are currently used in the food and pharmaceutical industries. Considering that fructans, in addition to their economic potential, provide plants with greater tolerance to drought, heat and cold, it is important to understand whether their metabolism is conserved in natural populations. In this work, we aimed to investigate if the levels of genetic diversity in the populations studied allow the selection of localities with a high genetic base and higher fructan content for future programs of <em>in</em> <em>situ</em> conservation and genetic improvement for inulin production. Therefore, we characterized the diversity, structure, and gene flow of seven natural populations from Brazilian Cerrado, using nine microsatellite loci (SSR). In addition, we compared whether the fructan composition varied between populations of different Cerrado phytophysiognomies. Overall, we found that <em>C. obovata</em> populations exhibited moderate levels of genetic diversity, low genetic differentiation, and high gene flow. This study identified two populations with less genetic diversity and therefore, greater attention should be given to conservation programs including these populations. Fructan metabolism is conserved in all populations, indicating that <em>C. obovata</em> is an important genetic resource with high potential for inulin production.</p> <p><strong>File descriptions</strong></p> <p>Population_code.txt - Contains a matrix that indicates the population_code, Population_name, Brazilian-state, Phytophysiognomy, Collection coordinates and Altitudes (m).</p> <p>Date_ Diaz et al.xlsx – Contains Genotypes crude of the individuals analyzed. Primer used for nine microsatellite loci (Camacho <em>et al</em> 2017). </p> <p>Carbohydrates_Diaz et al - Contains data for carbohydrates in <em>C. obovata</em> plant rhizophores in each population (BRA, UB, SD, SP).</p> <p><strong>Location: Brazilian Cerrado</strong></p>
Data from: Grazing by non-native ungulates negatively impacts vegetation important to a native species of concern
<p>Non-native grazers compete with native species across the globe. In the northwestern Great Basin of the western United States competition among livestock, feral horses, and Greater Sage-grouse has been the subject of numerous legal actions and management policies, yet spatially explicit temporal data documenting the details of this competition are lacking. We present a novel approach to studying the composition of the herbaceous understory across three study areas within the Great Basin with different historic and contemporary grazing regimes. We surveyed the landscape using distance sampling for livestock and horse feces as an index of use. In addition, we surveyed the herbaceous understory of random sites as well as sites chosen by female Greater Sage-grouse to nest and brood their chicks. We used a novel Bayesian hierarchical modeling framework to link vegetation metrics with the spatial-temporal distribution of horses and livestock while accounting for observation error. When livestock and feral horses were not present, we found that Greater Sage-grouse chose sites with higher percentages of perennial grasses and forbs to build their nests and brood their chicks compared to what was available to them. As livestock increased, we found evidence for decreases in the percentage of perennial grasses, forbs, cheatgrass (<em>Bromus tectorum</em>), and increases in the amount of bare ground. These effects were consistent at available sites and brood sites, however, we found less evidence for an impact of livestock at nest sites. As feral horses increased, we observed similar results at available sites, but at sites chosen by females to nest and brood their chicks, we observed increases in the amount of invasive cheatgrass as feral horses increased, which could reflect attempts by Greater Sage-grouse to compensate for reductions in protective cover. We present a noninvasive approach to assess space use that can be applied to other species. More importantly, we document that grazing by non-native ungulates impacts components of the plant community important to Greater Sage-grouse reproduction. We provide spatial-temporal maps of livestock and feral horse use to aid managers attempting to balance the needs of livestock producers, feral horses, Greater Sage-grouse, and ecosystem function.</p>
Supplementary material 1 from: Hejda M (2013) Do species differ in their ability to coexist with the dominant alien Lupinus polyphyllus? A comparison between two distinct invaded ranges and a native range. NeoBiota 17: 39-55. https://doi.org/10.3897/neobiota.17.4317
Entry data for the univariate models with species richness as a response variable. (doi: 10.3897/neobiota.17.4317.app1) File format: Micrisoft Excell document (xls). :
Fig. 1 a in Oviposition of AedeS japoNiCUS japoNiCUS (Diptera: Culicidae) and associated native species in relation to season, temperature and land use in western Germany
Fig. 1 a Study sites in the south of North Rhine-Westphalia, Germany in 2018. Forest types (different shades of green) follow Authorised Topographic-Cartographic Information System data [39]. b Details of study site Bonn SÜd, with three transects and their respective trap locations (different colours represent different land use types). See Additional file 2: dataset S1 for coordinates of trap locations. Background map from http:// www.openstreetmap.org (OpenStreetMap contributors). The map was produced with QGIS version 3.2
Fig. 2 in Oviposition of AedeS japoNiCUS japoNiCUS (Diptera: Culicidae) and associated native species in relation to season, temperature and land use in western Germany
Fig. 2 Setup of the transects. Trap locations range from oviposition habitat 1 (land use types—arable land, forest or settlement) through the transition zone into oviposition habitat 2 (land use types—forest, settlement or arable land). F100 Forest, 100 m from the transition zone; F10 forest, 10 m from the transition zone; F/S transition zone; S10 settlement, 10 m from the transition zone; S100 settlement, 100 m from the transition zone
Figure 1 in Developing biosecurity plans for non-native species in marine dependent areas: the role of legislation, risk management and stakeholder engagement
Figure 1. Five-stage approach for risk assessment management of NNS in Shetland, adapted from the ecosystem-based risk management framework (Cormier et al. 2013).
Figure 1 in The value of regular monitoring and diverse sampling techniques to assess aquatic non-native species: a case study from Orkney
Figure 1. Locations of the monitoring sites. A: North of Orkney Mainland and northern isles, B: Scapa Flow and southern isles. For corresponding site names refer to Supplementary material Table S1.
Figure 3 in The value of regular monitoring and diverse sampling techniques to assess aquatic non-native species: a case study from Orkney
Figure 3. The total number of sites for which each non-native or cryptogenic species has been recorded for each sampling method for 2016 and 2017. NB: Only species recorded in these two years are reported in this figure. Abbreviations: Cm: Caprella mutica, As: Ascidiella scabra, Bh: Bonnemaisonia hamifera, Sj: Schizoporella japonica, Ce: Corella eumyota, Aa: Ascidiella aspersa, Cp: Colpomenia peregrina, Cf: Codium fragile ssp. fragile, Ti: Tricellaria inopinata, Ah: Asterocarpa humilis, Bs: Botryllus schlosseri, Bl: Botrylloides leachii, Mh: Melanothamnus harveyi, Bf: Bugulina fulva, Dj: Dasysiphonia japonica, Jm: Jassa marmorata, Mi: Monocorophium insidiosum, Ma: Monocorophium acherusicum, Cs: Ctenodrilus serratus, Tj: Telmatogeton japonicus, Pa: Potamopyrgus antipodarum, Cb: Crassicorophium bonellii, Dl: Diplosoma listerianum.
Figure 2 in The value of regular monitoring and diverse sampling techniques to assess aquatic non-native species: a case study from Orkney
Figure 2. The total number of non-native and cryptogenic species recorded at each monitoring location (2012–2017).
Fig. 4 in Native Bugseed Species Corispermum Intermedium Schweigg And Alien Corispermum Pallasii Steven In Coastal Habitats Of Latvia - New Knowledges Of Distribution And Invasions
Fig. 4. Annual pioneer vegetation with Corispermum pallasii on dune habitats in Mērsrags, Latvia (Photo: P. Evarts-Bunders).
Fig. 1 in Native Bugseed Species Corispermum Intermedium Schweigg And Alien Corispermum Pallasii Steven In Coastal Habitats Of Latvia - New Knowledges Of Distribution And Invasions
Fig. 1. Locations of transects in coastal habitats in the whole seashore of Latvia (Explanation of transects numbers see Table 1).
Fig. 3 in Native Bugseed Species Corispermum Intermedium Schweigg And Alien Corispermum Pallasii Steven In Coastal Habitats Of Latvia - New Knowledges Of Distribution And Invasions
Fig. 3. Distribution of Corispermum intermedium Schweigg (left) and C. pallasiii Steven (right) in Latvia (1st row – localities known till 1940; 2nd row – localities known 1940 – 1990; 3rd row - localities known or verified since 1990).
Fig. 3 in A newly established non-native praying mantis species, Liturgusa maya (Mantodea: Liturgusidae) in Florida, USA, and a key to Florida mantis genera
Fig. 3. Praying mantis genera in Florida: (A) Mantoida maya female (photograph by Cheryl Harleston (www.inaturalist.org, CC BY-NC-SA); (B) Brunneria borealis female (photograph by Gary L. Dearman); (C) Oligonicella scudderi female (photograph by Jennifer Thompson); (D) Thesprotia graminis female (photograph by Sturgis McKeever, Georgia Southern University (www.Bugwood.org, CC-BY-NC); (E) Gonatista grisea female (photograph by Scott D. Nelson); (F) Liturgusa maya female (photograph by Brian Fridie Jr.); (G) Stagmomantis carolina female (photograph by Wendy Garfinkel-Gold); (H) Stagmomantis floridensis female (photograph by Andrew Nisip).
Fig. 2 in A newly established non-native praying mantis species, Liturgusa maya (Mantodea: Liturgusidae) in Florida, USA, and a key to Florida mantis genera
Fig. 2. Liturgusa maya specimens were collected in and near Long Key Natural Area and Nature Center (red star on large map) in Davie, Florida. The inset map indicates the proximity of the 2 collection sites (adjacent red stars) to National Parks and Preserves. (Maps modified from www.freemapsonline.com and www.nps.gov).
Fig. 1 in A newly established non-native praying mantis species, Liturgusa maya (Mantodea: Liturgusidae) in Florida, USA, and a key to Florida mantis genera
Fig. 1. Habitus images of Liturgusa maya collected in Long Key Natural Area and Nature Center, Davie, Florida. (A) Adult female (scale = 1 cm); (B) ootheca produced by captive female (scale = 1 mm) (photographs by Rick Wherley).
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.