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Supplementary material 8 from: Liu QL, Chen SF (2017) Two novel species of Calonectria isolated from soil in a natural forest in China. MycoKeys 26: 25-60. https://doi.org/10.3897/mycokeys.26.14688
Phylogenetic tree of Calonectria species in the Sphaero-Naviculate group based on maximum likelihood (ML) analysis of tub2 gene sequences : Data type: molecular data
Fig. 2 in Novel haplotypes of the COI-COII mtDNA region in the dark forest bee, Apis mellifera mellifera L., 1758
Fig. 2. The pattern of the P element sequence (54 bp) and the Q element (Q1, Q2, and Q3) sequences (197, 195, 195 bp, respectively) of the COICOII intergenic region of haplotypes M4 and M4' in Apis mellifera mellifera bees from Siberia. Nucleotide substitutions are highlighted, deletions are indicated by a dash and highlighted. Рис. 2. Структура P-Элемента (54 п.н.) и Q-Элементов (Q1, Q2 и Q3) (197, 195, 195 п.н., соответственно) межгенной области COI-COII мтДНК (гаплотипы M4 и M4') у пчел Apis mellifera mellifera сибирских популЯций. Нуклеотидные Замены выделены цветом, делеции обоЗначены тире и выделены цветом.
Fig. 1 in Novel haplotypes of the COI-COII mtDNA region in the dark forest bee, Apis mellifera mellifera L., 1758
Fig. 1. The map of localization of areas in Siberia (the Tomsk Region, the Krasnoyarsk Krai, the Altai Krai) and apiaries (dots 1–20), where a dark forest bee is identified. The distribution of COI-COII mtDNA locus variants (PQQ and PQQQ) in Apis mellifera mellifera bees from Siberian apiaries and their frequency in three regions of Siberia are presented on the right side of the figure. Рис. 1. Карта регионов Сибири (ТомскаЯ область, КрасноЯрский край, Алтайский край) и локалиЗации пасек (точки 1–20) на территории Сибири, где выЯвлена темнаЯ леснаЯ пчела. Распределение вариантов локуса COI-COII мтДНК (PQQ и PQQQ) у темных лесных пчел на пасеках и их частота в трех регионах Сибири представлены в правой части рисунка.
Data from: Influence of natural and novel organic carbon sources on denitrification in forest, degraded urban, and restored streams
Organic carbon is important in regulating ecosystem function, and its source and abundance may be altered by urbanization. We investigated shifts in organic carbon quantity and quality associated with urbanization and ecosystem restoration, and its potential effects on denitrification at the riparian–stream interface. Field measurements of streamwater chemistry, organic carbon characterization, and laboratory-based denitrification experiments were completed at two forested, two restored, and two unrestored urban streams at the Baltimore Long-Term Ecological Research site, Maryland, USA. Dissolved organic carbon (DOC) and nitrate loads increased with runoff according to a power-law function that varied across sites. Stable isotopes and molar C:N ratios suggested that stream particulate organic matter (POM) was a mixture of periphyton, leaves, and grass that varied across site types. Stable-isotope signatures and lipid biomarker analyses of sediments showed that terrestrial organic carbon sources in streams varied as a result of riparian vegetation. Laboratory experiments indicated that organic carbon amendments significantly increased rates of denitrification (35.1 ± 9.4 ng N·[g dry sediment]−1·h−1; mean ± SE) more than nitrate amendments (10.4 ± 4.0 ng N·[g dry sediment]−1·h−1) across streamflow conditions and sites. Denitrification experiments with naturally occurring carbon sources showed that denitrification was significantly higher with grass clippings from home lawns (1244 ± 331 ng N·g dry sediment−1·h−1), and overall unrestored urban sites showed significantly higher denitrification rates than restored and forest sites. We found that urbanization influences organic carbon sources and quality in streams, which can have substantial downstream impacts on ecosystem services such as denitrification.
FIGURE 3. Cladophialophora bromeliacearum URM 8085 in Cladophialophora bromeliacearum (Herpotrichiellaceae, Chaetothyriales), a novel endophytic species from the Brazilian tropical dry forest
FIGURE 3. Cladophialophora bromeliacearum URM 8085 (ex-type living culture). a. Colony on PDA in the top and MEA after 30 days at 27 °C. b–c. Conidiophores and conidiogenous cells. d–e. Conidiophores, conidiogenous cells and conidia. f. Details of a conidiogenous cell and conidia. g. Chlamydospore. Scale bars: 10 µm.
FIGURE 2 in Cladophialophora bromeliacearum (Herpotrichiellaceae, Chaetothyriales), a novel endophytic species from the Brazilian tropical dry forest
FIGURE 2. Maximum likelihood (ML) trees obtained using an independent matrix of ITS and LSU rDNA sequences of Cladophialophora species. The new species is in bold face. ML bootstrap (ML-BS) values from 70% are shown near nodes. The tree was rooted to Phialophora reptans CBS 113.85. The bar represents expected number of substitutions per site. The superscripts T, ET, and LT indicate ex-type, ex-epitype and ex-lectotype strains, respectively.
FIGURE 1 in Cladophialophora bromeliacearum (Herpotrichiellaceae, Chaetothyriales), a novel endophytic species from the Brazilian tropical dry forest
FIGURE 1. Bayesian inference (BI) tree obtained using a combined matrix of ITS and LSU rDNA sequences of Cladophialophora species. The new species is in bold face. BI posterior probability (BPP) and ML bootstrap (ML-BS) from 0.95 and 70%, respectively, are shown near nodes. The tree was rooted to Phialophora reptans CBS 113.85. The bar represents expected number of substitutions per site. The superscripts T, ET, and LT indicate ex-type, ex-epitype and ex-lectotype strains, respectively.
Data from: Ovipositor and mouthparts in a fossil insect support a novel ecological role for early orthopterans in 300 million years old forests
<p>A high portion of the earliest known, Pennsylvanian, insect fauna is composed of the so-called 'lobeattid insects', which systematic affinities and role as foliage feeders remain debated. We investigated hundreds of samples of a new lobeattid species from the Xiaheyan locality using a combination of photographic techniques, including Reflectance Transforming Imaging, and geometric morphometrics, to document its morphology, and infer its phylogenetic position and ecological role. <i>Ctenoptilus frequens</i> sp. nov. possessed a sword-shaped ovipositor whose valves interlocked by two ball-and-socket mechanisms. This unambiguously supports lobeattids as stem-relatives of all living Orthoptera (crickets, grasshoppers, katydids). Given the herein presented and other remains, it follows that this group experienced an early diversification coupled with high numbers of individuals. The ovipositor shape additionally indicates that ground was the preferred substrate for eggs. Visible mouthparts made it possible to assess the efficiency of the mandibular food uptake system in comparison to a wide array of extant species. The new species was omnivorous which explains the paucity of external damage on contemporaneous plant foliage.</p>
FIGURE 2 in Isolation and characterization of novel Dothideomycetes species from forest soils in Chiang Rai and Krabi (Thailand): additions to the diversity of Curvularia and Verruconis
FIGURE 2. Maximum likelihood phylogenetic tree based on combined SSU-ITS-LSU sequence data for Sympoventuriaceae. Bootstrap support values of maximum likelihood greater than 60% and Bayesian posterior probabilities (BYPP) greater than 0.95 are indicated above the nodes. Newly added strains are in blue and ex-type strains are in bold. The tree is rooted to Venturia inaequalis (CBS 594.70 and CBS 815.69). Isolated substrates are indicated in triangles. Black: Human/ animal, green: plants, brown: soil, purple: rock/ sediments, blue: aquatic habitat. unknown: empty
FIGURE 5 in Isolation and characterization of novel Dothideomycetes species from forest soils in Chiang Rai and Krabi (Thailand): additions to the diversity of Curvularia and Verruconis
FIGURE 5. Verruconis soli (MFLU22-0257, holotype) a. Colony from above (on PDA). b. Colony from below (on PDA). c. Sporulated colony. d. Melanized hyphae. e. Hyaline hyphae f–l. Conidiogenesis. m–r. Conidia. Scale bars: e = 15 μm, d, f–k = 10 μm, l–r = 5 μm.
FIGURE 6 in Isolation and characterization of novel Dothideomycetes species from forest soils in Chiang Rai and Krabi (Thailand): additions to the diversity of Curvularia and Verruconis
FIGURE 6. Verruconis thailandica (MFLU22-0258, new record) a. Colony from above (on PDA). b. Colony from below (on PDA). c. Sporulated colony with conidial attachments on the mycelium. d. Immature hyphae e. Mature septate hyphae. f. Conidiogenesis synnematous. g–j. Conidiogenesis mononematous conidiophores. k–p Conidia. Scale bars: d, e = 20 μm, f–l, n = 10 μm, m, o, p = 5 μm.
FIGURE 4 in Isolation and characterization of novel Dothideomycetes species from forest soils in Chiang Rai and Krabi (Thailand): additions to the diversity of Curvularia and Verruconis
FIGURE 4. Curvularia chiangmaiensis (MFLU22-0252, new record) a. Colony from above (on PDA). b. Colony from below (on PDA). c. Sporulated colony with conidial attachments on the mycelium. d. Immature hyphae e. Mature melanized hyphae. f. Hyaline chlamydospores. g. Melanized chlamydospores h. Macronematous conidiogenesis on the conidiophore. i–m. Conidiogenesis. n–s. Conidia. Scale bars: g = 25 μm, d–f, h–l = 20 μm, m–s= 10 μm
FIGURE 1 in Isolation and characterization of novel Dothideomycetes species from forest soils in Chiang Rai and Krabi (Thailand): additions to the diversity of Curvularia and Verruconis
FIGURE 1. (Continued) Maximum likelihood phylogenetic tree generated of the combined ITS-GAPDH-tef1-α sequence data for Curvularia.
FIGURE 3 in Isolation and characterization of novel Dothideomycetes species from forest soils in Chiang Rai and Krabi (Thailand): additions to the diversity of Curvularia and Verruconis
FIGURE 3. Curvularia chiangraiensis (MFLU22-0256, holotype). a. Colony from above (on PDA). b. Colony from below (on PDA). c. Sporulated colony with conidial attachments on the mycelium. d. Immature hyphae. e. Mature melanized hyphae. f–k. conidiogenesis. l–p. Conidia. Scale bars: g = 25 μm, d–f, h–l = 20 μm, g, m–p= 10 μm.
FIGURE 1 in Isolation and characterization of novel Dothideomycetes species from forest soils in Chiang Rai and Krabi (Thailand): additions to the diversity of Curvularia and Verruconis
FIGURE 1. Maximum likelihood phylogenetic tree generated of the combined ITS-GAPDH-tef1-α sequence data for Curvularia. Bootstrap support values of maximum likelihood greater than 60% and Bayesian posterior probabilities (BYPP) greater than 0.95 are indicated above the nodes. Newly added strains are in blue and ex-type strains are in bold. The tree is rooted to Bipolaris maydis (CBS13629P) and B. panici-miliacei (CBS 19929). Isolated substrates/ habitat is indicated in triangles. Black: Human/ animal, green: plants, brown: soil, pink: air, blue: aquatic habitat. unknown:empty
Data from: Can ecosystem functioning be maintained despite climate-driven shifts in species composition? Insights from novel marine forests
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Data from: Can novel pest outbreaks drive ecosystem transitions in northern-boreal birch forest?
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Data from: Influence of natural and novel organic carbon sources on denitrification in forest, degraded urban, and restored streams
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Data from: Expanding the toolbox of nutrient limitation studies: novel method of soil microbial in-growth bags to evaluate nutrient demands in tropical forests
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Data from: Novel, continuous monitoring of fine-scale movement using fixed-position radiotelemetry arrays and random forest location fingerprinting
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Annotated Behaviour and Observability Dataset (ABODe)
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