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Dataset results
54 results for “phosphoproteomics”
Source data for "Benchmarking commonly used software suites and analysis workflows for DIA proteomics and phosphoproteomics"
<p>Source data of "Benchmarking commonly used software suites and analysis workflows for DIA proteomics and phosphoproteomics".</p> <p>For reproduction of main and supplementary figures.</p> <p>MS raw files, spectral libraries, and MS data search results are stored in iProX with identifier IPX0004576001.</p> <p> </p>
The regulatory landscape of the yeast phosphoproteome - GitHub Data
<p>Data for: https://github.com/Villen-Lab/YeastPhosphoAtlasAnalysis</p>
Proteomics and phosphoproteomics datasets
<p>The proteome and phosphoproteome datafiles.</p>
Phosphoproteomics analysis of antibody-based stimulation of TCR in CD4+ T cells
<p>Code associated with the paper "LymphoAtlas: a dynamic and integrated phosphoproteomic resource of TCR signaling in primary T cells reveals ITSN2 as a regulator of effector functions" published in Molecular Systems Biology in 2020.</p> <p>abstract: <br> T-cell receptor (TCR) ligation-mediated protein phosphorylation regulates the activation, cellular responses, and fates of T cells. Here, we used time-resolved high-resolution phosphoproteomics to identify, quantify, and characterize the phosphorylation dynamics of thousands of phosphorylation sites in primary T cells during the first 10 min after TCR stimulation. Bioinformatic analysis of the data revealed a coherent orchestration of biological processes underlying T-cell activation. In particular, functional modules associated with cytoskeletal remodeling, transcription, translation, and metabolic processes were mobilized within seconds after TCR engagement. Among proteins whose phosphorylation was regulated by TCR stimulation, we demonstrated, using a fast-track gene inactivation approach in primary lymphocytes, that the ITSN2 adaptor protein regulated T-cell effector functions. This resource, called LymphoAtlas, represents an integrated pipeline to further decipher the organization of the signaling network encoding T-cell activation. LymphoAtlas is accessible to the community at: <a href="https://bmm-lab.github.io/LymphoAtlas">https://bmm-lab.github.io/LymphoAtlas</a>.</p>
Phosphoproteomics profiling of mice with genetic deletions in Ku70
<p>Phosphoproteomics data for WT, Ku70 +/- and Ku70 -/- mice.</p>
Effect of Exercise on the Human Skeletal Muscle Phosphoproteome
ClinicalTrials.gov study NCT04263714. IPD Sharing: YES. Countries: 1. Publications: 0.
Data from: Parallel proteomic and phosphoproteomic analyses of successive stages of maize leaf development
Open the record for dataset details and reuse information.
Integration of Thermal Proteome Profiling with phosphoproteomic and transcriptomic data via mechanistic network models decodes the molecular response to PARP inhibition
GEO Series GSE243208. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Identification of PKA-dependent signaling network using CRISPR-Cas9 coupled with quantitative transcriptomics, proteomics and phosphoproteomics
GEO Series GSE95008. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
Global phosphoproteome and transcriptome integration of Chlamydia trachomatis infection
GEO Series GSE104166. Homo sapiens. 8 samples. Type: Expression profiling by array.
Integration of transcriptomics, proteomics, phosphoproteomics analysis for characterization of pulmonary arterial hypertension in Chinese people
GEO Series GSE272776. Homo sapiens. 16 samples. Type: Expression profiling by high throughput sequencing.
Transcriptomic, proteomic and phosphoproteomic underpinnings of daily exercise performance and Zeitgeber activity of endurance training in mouse skeletal muscle
GEO Series GSE178262. Mus musculus. 40 samples. Type: Expression profiling by high throughput sequencing.
The Glycogen Synthase Kinase-3 Phosphoproteome: GSK-3 Phosphorylates Multiple Splicing Factors and Regulates Alternative Splicing
GEO Series GSE90921. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
A spatial vascular transcriptomic, proteomic and phosphoproteomic atlas unveils an angiocrine Tie Wnt signaling axis in the liver
GEO Series GSE155797. Mus musculus. 32 samples. Type: Expression profiling by high throughput sequencing.
Phosphoproteomic Patterns as a Novel Biomarker for Aurora and Polo-like Kinase Inhibitors in Non-Small Cell Lung Cancer
ClinicalTrials.gov study NCT01510405. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Phosphoproteomic Profile of Children With Down Syndrome
ClinicalTrials.gov study NCT06279208. IPD Sharing: UNDECIDED. Countries: 1. Publications: 0.
Network-based elucidation of colon cancer drug resistance by phosphoproteomic time-series analysis
GEO Series GSE224396. Homo sapiens. 40 samples. Type: Other.
Global regulatory roles of the cAMP/PKA pathway revealed by phenotypic, transcriptomic, and phosphoproteomic analyses in a null mutant of PKA catalytic subunit in Candida albicans
GEO Series GSE92621. Candida albicans. 3 samples. Type: Expression profiling by high throughput sequencing.
Chromatin phosphoproteomics unravels a function for AT-hook motif nuclear localized protein AHL13 in PAMP-triggered immunity
GEO Series GSE119465. Arabidopsis thaliana. 6 samples. Type: Expression profiling by high throughput sequencing.
Phosphoproteomics of NLRC4 KO mice and wild-type littermates
<p>Raw sequencing data of phosphoproteomics of NLRC4 KO mice and wild-type littermates</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.