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83 results for “regional interaction”
Simulation of Southern Ocean cloud processes using the high-resolution regional UK Met Office Unified Model with interactive aerosols
<p>Code and model data used to create the figures for Price et al., 2024, JGR (in prep.).</p>
Data from: Fine nurse variations explain discrepancies in the stress-interaction relationship in alpine regions
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Data from: Local and regional stressors interact to drive a salinization-induced outbreak of predators on oyster reefs
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Palm-primate interactions: Number of palm species and palm species identity in primate diets according to region (Africa, Asia, Madagascar, Neotropics); Parts of palm species consumed by primates according to region; palm species of high importance in primate diets according to region; palm seed dispersal by primates according to region
<p>We compiled data on palms in the diets of primates and on palm seed dispersal by primates to criticially discuss the hypothesis by Onstein et al. 2020 (Proc R Soc B) that "the interactions between primates and palms are related to the co-evolutionary dynamics of primate colour vision systems and palm fruit colours". Our copilation of data on interactions between palms and primates suggests that the mutualism-dependent co-diversification scenario deployed by Onstein et al. is not supported in view of the low<br> level of extant primate-palm interactions in Africa.</p>
A regional assessment of changes in plant-plant interactions along topography gradients in Tunisian sebkhas
<p><span>Facilitation among plants in dry ecosystems is crucial for diversity and ecosystem functioning and stability. However, the importance of facilitation in extremely stressful conditions is highly debated. We attempt to separate the effects of direct non-resource and resource stress factors on plant-plant interactions by assessing changes in facilitation and competition along salinity gradients at two contrasting levels of aridity. We selected eight saline depressions (hereafter sebkhas) in the wet and dry Mediterranean arid climate of North-Africa, from central Tunisia to the Libyan border 500 km south-eastward. In each sebkha, we transplanted at four positions along the salinity gradient induced by topography, both in open areas and below dominant shrubs, three target species with contrasting tolerances to salinity stress. Target plant survival, soil electrical conductivity and moisture were recorded before and after the dry summer season in all treatments. Shrubs decreased salinity and drought stresses in all treatments and facilitation was the dominant interaction. However, we found a strong collapse of facilitation along the salinity gradient, due to a dramatic mortality of the three target species both with and without neighbours above their threshold of salinity tolerance. Increasing aridity induced an earlier collapse of facilitation along the gradient. The three target species had contrasting responses to neighbours, with the least stress-tolerant species being facilitated and the two most stress-tolerant ones negatively affected by neighbours. Our study shows that disentangling resource and non-resource stresses along gradients and controlling for target species effects help understanding variation in plant-plant interactions under highly stressful conditions.</span></p>
SpatPPI: a geometric deep learning model for predicting protein-protein interactions involving intrinsically disordered regions
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Data supporting "Modeling and evaluating the effects of irrigation on land-atmosphere interaction in southwestern Europe with the regional climate model REMO2020-iMOVE using a newly developed parameterization"
<p>This data supports the analysis of the manuscript Asmus et al. 2023 "Modeling and evaluating the effects of irrigation on land-atmosphere interaction in southwestern Europe with the regional climate model REMO2020-iMOVE using a newly developed parameterization".</p><p><strong>Simulation data</strong></p><p>The simulation data is created with REMO2020-iMOVE using the new irrigation parameterization. The results are saved as NetCDF files with monthly mean values and/or time series (hourly) of single variables for the analysis period. A list of the simulations can be found below.</p><p><strong>Observation data </strong></p><p>The observation data is published with the kind permission of ISPRA which hosts the SCIA database (www.scia.isprambiente.it). If you use this data, please make sure to include the following data source:<br>SCIA by ISPRA - Area Climatologia operativa - Via V. Brancati 48 00144 Roma. <br>We downloaded monthly mean values for the variables T2Max, T2Min and T2Mean from <a href="http://193.206.192.214/servertsutm/serietemporali100.php">http://193.206.192.214/servertsutm/serietemporali100.php </a>(last accessed on 14/10/2022) to verify the model results with and without irrigation parameterization. </p><p>By untarring the tarballs, the data structure is created that is necessary to execute the analysis scripts.</p><p>For more information or additional data please contact the author.</p><p> </p><p><strong>tarball | exp_number | description </strong></p><p>067015.tar.gz | 067015 | not irrigated</p><p>067016.tar.gz | 067016 | irrigated with "adaptive water application scheme"</p><p>067017.tar.gz | 067017 | irrigated with "adaptive water application scheme"</p><p>067019.tar.gz | 067019 | irrigated with "flexible time water application scheme"</p><p>067020.tar.gz | 067020 | irrigated with "prescribed water application scheme"</p><p>observation_scia.tar | - | observation data from SCIA </p><p> </p><p><strong>Data structure for simulation data</strong></p><p>\<exp_number><br> \monthly<br> \hourly<br> \var_series<br> \<variable><br><br>Note:<br>\067015 includes static variables<br> \irrifrac (irrigated fraction)<br> \bla (land-sea-mask)</p>
Data from: Understanding nutrient dynamics in an African savanna: local biotic interactions outweigh a major regional rainfall gradient
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A regional assessment of changes in plant-plant interactions along topography gradients in Tunisian sebkhas
Open the record for dataset details and reuse information.
Palm-primate interactions: Number of palm species and palm species identity in primate diets according to region (Africa, Asia, Madagascar, Neotropics); Parts of palm species consumed by primates according to region; palm species of high importance in primate diets according to region; palm seed dispersal by primates according to region
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mRNA regions where 80S ribosomes pause during translation elongation in vivo interact with protein uS19, a component of the decoding site
GEO Series GSE128265. Homo sapiens. 6 samples. Type: Other.
DNA Methylation-Based High-Resolution Mapping of Long-Distance Chromosomal Interactions in Nucleosome-Depleted Regions (HiC)
GEO Series GSE242396. Saccharomyces cerevisiae. 6 samples. Type: Other.
The C-terminal region of the RNA helicase CshA is required for the interaction with the degradosome and turnover of bulk RNA in the opportunistic pathogen Staphylococcus aureus.
GEO Series GSE68772. Staphylococcus aureus. 24 samples. Type: Expression profiling by high throughput sequencing.
The murine 900 kb downsteam region from Gata3 interacts to the transciption start site and three enhancers in Th2 cells.
GEO Series GSE241990. Mus musculus. 7 samples. Type: Other.
Folliculin-interacting protein FNIP2 impacts on overweight and obesity through a polymorphism in a conserved 3’ untranslated region (SNP array)
GEO Series GSE215158. Homo sapiens. 790 samples. Type: Other.
DNA Methylation-Based High-Resolution Mapping of Long-Distance Chromosomal Interactions in Nucleosome-Depleted Regions (RNA)
GEO Series GSE242399. Saccharomyces cerevisiae. 2 samples. Type: Expression profiling by high throughput sequencing.
Intrinsically Disordered Regions in Chromodomain Helicase DNA-binding (CHD) Proteins Shape Distinct Protein Interaction Networks
GEO Series GSE275475. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
Characterization of antibiotic resistance and host-microbiome interactions in the human upper respiratory tract during influenza infection [16s rRNA gene V4 region]
GEO Series GSE126900. human metagenome. 34 samples. Type: Other.
DNA Methylation-Based High-Resolution Mapping of Long-Distance Chromosomal Interactions in Nucleosome-Depleted Regions
GEO Series GSE242400. Saccharomyces cerevisiae. 82 samples. Type: Other; Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing.
Haplotype-specific chromatin looping reveals genetic interactions of regulatory regions modulating gene expression in 8p23.1
GEO Series GSE211246. Homo sapiens. 14 samples. Type: Other.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.