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Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
162
datasets available to search
ShareScore release 0.9.0
Dataset results
162 results for “rna 3d”
p53 rapidly restructures 3D chromatin organization to trigger a transcriptional response [RNA-seq]
GEO Series GSE235946. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
3D chromatin organization changes modulate adipogenesis and osteogenesis [RNA-seq]
GEO Series GSE151322. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Systematic analysis of circadian gene expression mediated by epigenetic modification and 3D genome organization in Rice [RNA-Seq]
GEO Series GSE213093. Oryza sativa Indica Group. 36 samples. Type: Expression profiling by high throughput sequencing.
Oncogenic Notch promotes long-range regulatory interactions within hyperconnected 3D cliques [MB157_RNA-seq]
GEO Series GSE116867. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
3D Landscape of Regulatory Elements and Transcription Factors for Transcriptional Regulation in Arabidopsis [RNA-seq]
GEO Series GSE233524. Arabidopsis thaliana. 6 samples. Type: Expression profiling by high throughput sequencing.
The hyperconnected 3D clique at the Ets1 locus is required for T cell function (RNA-Seq)
GEO Series GSE211177. Mus musculus. 36 samples. Type: Expression profiling by high throughput sequencing.
Dzip3 regulates developmental genes in mouse embryonic stem cells by reorganizing 3D chromatin conformation [RNA-seq]
GEO Series GSE71882. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
Generation of matched patient-derived xenograft in vitro-in vivo models using 3D macroporous hydrogels for the study of liver cancer [RNA-seq]
GEO Series GSE109903. Homo sapiens. 28 samples. Type: Expression profiling by high throughput sequencing.
RNA-Chromatin Interactome Reveals Enhancer-Promoter Connectivity in 3D Genome
GEO Series GSE82312. Homo sapiens; Mus musculus; Drosophila melanogaster. 12 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
Oncogenic Notch promotes long-range regulatory interactions within hyperconnected 3D cliques [DND41_RNA-seq]
GEO Series GSE116873. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
GATA6 is a Novel Regulator of Gene Expression and 3D Genome in Colorectal Cancer (RNA-Seq)
GEO Series GSE266748. Homo sapiens; Mus musculus. 28 samples. Type: Expression profiling by high throughput sequencing.
RNA-Seq study of cartilage tissue regeneration in vivo using a biomimetic 3D scaffold
GEO Series GSE149098. Oryctolagus cuniculus. 9 samples. Type: Expression profiling by high throughput sequencing.
Deciphering the role of 3D genome organization in breast cancer susceptibility (RNA-Seq)
GEO Series GSE184284. Rattus norvegicus. 13 samples. Type: Expression profiling by high throughput sequencing.
Epithelial cells in 2D and 3D culture exhibit significant differences in long-range genomic interactions [RNA-Seq]
GEO Series GSE136173. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
Retinal Cell Type Epigenetic Memory Predicts Reprogramming Efficiency and Retinogenesis in 3D Organoid Cultures [RNA-Seq_Mm]
GEO Series GSE109713. Mus musculus. 28 samples. Type: Expression profiling by high throughput sequencing.
SATB1 Regulates 3D Genome Architecture in T cells by Constraining Chromatin Interactions surrounding CTCF-binding sites [RNA-seq]
GEO Series GSE224729. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
RNA sequencing of conventional 2D and 3D cultured melanoma M14 cells
GEO Series GSE248785. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Engineered MED12 mutations drive uterine fibroid-like transcriptional and metabolic programs by altering the 3D genome compartmentalization [MED12_G44N_2D_RNA_seq]
GEO Series GSE226014. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing.
Dissecting Non-Coding GWAS Loci with High-Resolution 3D Chromatin Interactions Reveals Causal Genes with Relevance to Heart Failure [RNA-seq]
GEO Series GSE281465. Homo sapiens. 3 samples. Type: Expression profiling by high throughput sequencing.
Clonal evolution of the 3D chromatin landscape of relapsed ALL [RNA-seq]
GEO Series GSE222685. Homo sapiens. 24 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.