Find research datasets worth reusing

opencc-by-4.0Jan 2020View details →

Antihypertensive drug metabolite screening toy dataset for MS/MS application

Objectives : Detect and visualize antihypertensive drug metabolites in untargeted metabolomics experiments Cohort : 6/26 patients on antihypertensive therapy Mass spectrometer : Thermo Q-Exactive coupled to pHILIC chromatography using data dependent analysis (DDA) MS/MS gas-phase experiments

opencc-by-4.0Feb 2020View details →

S62 | NORMANEWS2 | NormaNEWS2: Retrospective Screening of New Emerging Contaminants

This is the collection associated with list S62 NORMANEWS2 on the NORMAN Suspect List Exchange. <a href="https://www.norman-network.com/nds/SLE/">https://www.norman-network.com/nds/SLE/</a> List of suspects provided by many contributors to <a href="https://www.norman-network.net/?q=node/327">NormaNEWS2</a>, collated by Kevin Thomas and colleagues at UQ. The Norman Early Warning System (NormaNEWS) is a collaborative activity aimed at members active in non-target analysis. The concept of NormaNEWS is that when one group identifies a new contaminant of emerging concern identification criteria are sent to other members of the group who use retrospective analysis techniques to check their own samples. This way we can rapidly establish the occurrence of newly identified compounds of emerging concern across Europe and beyond. NormaNEWS is lead by Kevin Thomas at NIVA (Norway) / University of Queensland (Australia) as part of the <a href="http://www.normandata.eu/?q=node/252">Non-target screening cross-working group activity</a> of the NORMAN network. What is NormaNEWS and how does it work The first round of the collaborative NormaNEWS joint activity in 2016 successfully demonstrated the usefulness of the retrospective screening of high resolution mass spectrometric data in establishing the spatial and temporal occurrence of newly identified compounds of emerging concern. The results of this pilot study are presented in <a href="https://pubs.acs.org/doi/abs/10.1021/acs.est.8b00365?journalCode=esthag">Alygizakis et al., ES&T, DOI: 10.1021/acs.est.8b00365</a>. The list of contaminants screened can be found on the <a href="http://www.norman-network.com/?q=node/236">NORMAN Suspect Exchange</a> and the <a href="https://comptox.epa.gov/dashboard/chemical_lists/normanews">CompTox Chemistry Dashboard</a>. To build on the first study, the NORMAN network has decided to launch NormaNEWS 2 as part of the activities of the <a href="http://www.normandata.eu/?q=node/252">NTS Cross-Working Group Activity</a> (<a href="http://www.norman-network.net/sites/default/files/files_private/JoinProgramme2018/NORMAN%20JPA%202018_final_Feb2018.pdf">NORMAN JPA 2018</a> and NORMAN JPA 2019). In NormaNEWS 2 we wish to further develop this approach to cover many more contaminants of emerging concern, include a broader range of matrices, and significantly increase temporal and spatial coverage. While NORMAN members are encouraged to participate in NormaNEWS, laboratories outside the NORMAN network are also welcome to participate.

Brachypodium distachyon images used in the paper entitled "Led Color Gradient As A New Screening Tool For Rapid Phenotyping Of Plant Responses To Light Quality" by Pierre LEJEUNE et al.

Brachypodium distachyon images used in the paper entitled "Led Color Gradient As A New Screening Tool For Rapid Phenotyping Of Plant Responses To Light Quality" by Pierre LEJEUNE, Anthony FRATAMICO, Frédéric BOUCHÉ, Samuel HUERGA-FERNÁNDEZ, Pierre TOCQUIN, Claire PÉRILLEUX

Euphorbia peplus images used in the paper entitled "Led Color Gradient As A New Screening Tool For Rapid Phenotyping Of Plant Responses To Light Quality" by Pierre LEJEUNE et al.

Euphorbia peplus images used in the paper entitled "Led Color Gradient As A New Screening Tool For Rapid Phenotyping Of Plant Responses To Light Quality" by Pierre LEJEUNE, Anthony FRATAMICO, Frédéric BOUCHÉ, Samuel HUERGA-FERNÁNDEZ, Pierre TOCQUIN, Claire PÉRILLEUX

Arabidopsis thaliana images used in the paper entitled "Led Color Gradient As A New Screening Tool For Rapid Phenotyping Of Plant Responses To Light Quality" by Pierre LEJEUNE et al.

Arabidopsis thaliana images used in the paper entitled "Led Color Gradient As A New Screening Tool For Rapid Phenotyping Of Plant Responses To Light Quality" by Pierre LEJEUNE, Anthony FRATAMICO, Frédéric BOUCHÉ, Samuel HUERGA-FERNÁNDEZ, Pierre TOCQUIN, Claire PÉRILLEUX

Oryza sativa images used in the paper entitled "Led Color Gradient As A New Screening Tool For Rapid Phenotyping Of Plant Responses To Light Quality" by Pierre LEJEUNE et al.

Oryza sativa images used in the paper entitled "Led Color Gradient As A New Screening Tool For Rapid Phenotyping Of Plant Responses To Light Quality" by Pierre LEJEUNE, Anthony FRATAMICO, Frédéric BOUCHÉ, Samuel HUERGA-FERNÁNDEZ, Pierre TOCQUIN, Claire PÉRILLEUX

Solanum lycopersicum images used in the paper entitled "Led Color Gradient As A New Screening Tool For Rapid Phenotyping Of Plant Responses To Light Quality" by Pierre LEJEUNE et al.

Solanum lycopersicum images used in the paper entitled "Led Color Gradient As A New Screening Tool For Rapid Phenotyping Of Plant Responses To Light Quality" by Pierre LEJEUNE, Anthony FRATAMICO, Frédéric BOUCHÉ, Samuel HUERGA-FERNÁNDEZ, Pierre TOCQUIN, Claire PÉRILLEUX

Ocimum basilicum images used in the paper entitled "Led Color Gradient As A New Screening Tool For Rapid Phenotyping Of Plant Responses To Light Quality" by Pierre LEJEUNE et al.

Ocimum basilicum images used in the paper entitled "Led Color Gradient As A New Screening Tool For Rapid Phenotyping Of Plant Responses To Light Quality" by Pierre LEJEUNE, Anthony FRATAMICO, Frédéric BOUCHÉ, Samuel HUERGA-FERNÁNDEZ, Pierre TOCQUIN, Claire PÉRILLEUX

opencc-by-4.0Jun 2023View details →

Screened literature for mapping review of environmental problem shifting (EPS)

Final literature sample used in manuscript. (506 publications). Version 2 after revision. Columns from the Scopus API:<ul><li>DOI, ISSN, ISBN</li><li>Subjabbr: Abbreviation of Scopus subject area</li><li>Publication year</li><li>Pubname: The name of the journal</li><li>Authkeywords: The article keywords</li><li>Title: The document title</li></ul> Columns from our classification:<ul><li>Articletype: Classification into empirical, review and conceptual-theoretical.</li><li>Documenttype: The type of publication: journal article, book chapter, reports.</li><li>Counter: Marks the 13 studies that find no shifting or positive environmental impacts only.</li><li>Miti measures: The type of mitigation option.</li><li>Split measures: The subtype of mitigation. Only coded for CDR; Solar, hydro and wind power and Other.</li><li>Methods: The method(s) used in empirical papers</li><li>Impacts: The environmental impact.</li><li>Split impacts: The environmental impact specified for subtypes of mitigation.</li></ul>

opencc-by-4.0Sep 2023View details →

Biotransamination of Furan-Based Aldehydes with Isopropylamine: Enzyme Screening and pH Influence

Furan-based amines are highly valuable compounds which can be directly obtained via reductive amination from easily accessible furfural, 5-(hydroxymethyl)furfural (HMF) and 2,5-diformylfuran (DFF). Herein the biocatalytic amination of these carbonyl derivatives is disclosed using amine transaminases (ATAs) and isopropylamine (IPA) as amine donors. Among the different biocatalysts tested, the ones from Chromobacterium violaceum (Cv-TA), Arthrobacter citreus (ArS-TA), and variants from Arthrobacter sp. (ArRmut11-TA) and Vibrio fluvialis (Vf-mut-TA), afforded high levels of product formation (>80 %) at 100–200 mM aldehyde concentration. The transformations were studied in terms of enzyme and IPA loading. The pH influence was found as a key factor and attributed to the imine/aldehyde equilibrium that can arise from the high reactivity of the carbonyl substrates with a nucleophilic amine such as IPA.

opencc-by-4.0Dec 2023View details →

Dataset for Machine Learning Assisted Citation Screening for Systematic Reviews

The work "Machine Learning Assisted Citation Screening for Systematic Reviews" explored the problem of citation screening automation using machine-learning (ML) with an aim to accelerate the process of generating <a href="https://en.wikipedia.org/wiki/Systematic_review#:~:text=Systematic%20reviews%20are%20a%20type,synthesize%20findings%20qualitatively%20or%20quantitatively." rel="nofollow">systematic reviews</a>. Manual process of citation screening involve two reviewers manually screening the searched studies using a predefined inclusion criteria. If the study passes the "inclusion" criteria, it is included for further analysis or is excluded. As apparant through manual screening process, the work considered citation screening as a binary classification problem whereby any ML classifier could be trained to separate the searched studies into these two classes (include and exclude).   A physiotherapy citation screening dataset was used to test automation approaches and the dataset includes the studies identified for citation screening in an update to the systematic review by Hilfiker et al. The dataset included titles and abstracts (citations) from 31,279 (deduplicated: 25,540) studies identified during the search phase of this SR. These studies were already manually assessed for relevance and labelled by two reviewers into two mutually exclusive labels. The uploaded file consists of 25,540 data samples, with each data sample separated by a new line. It is a tab separated file and the data in it is structured as shown below. This dataset was manually labelled into include and exclude by Hilfiker et al.   <table> <tbody> <tr> <td>Title</td> <td>PMID</td> <td>Abstract </td> <td>Class</td> <td>MeSH terms (separated by a pipe)</td> </tr> <tr> <td>Structured exercise improves physical functioning in women with stages I and II breast cancer: results of a randomized controlled trial.  </td> <td>11157015</td> <td>Abstract PURPOSE: Self-directed and supervised exercise were compared with usual care in a clinical trial designed to evaluate the effect of structured exercise on physical functioning and other dimensions of health-related quality of life in women with stages I and II breast cancer. PATIENTS AND METHODS: One hundred twenty-three women with stages I and II breast cancer completed baseline evaluations of generic and disease- and site-specific health-related quality of life, aerobic capacity, and body weight. Participants were randomly allocated to one of three intervention groups: usual care (control group), self-directed exercise, or supervised exercise. Quality of life, aerobic capacity, and body weight measures were repeated at 26 weeks...</td> <td>include or exclude</td> <td>Clinical Trial | Comparative Study | Randomized Controlled Trial | Research Support, Non-U.S. Gov't | Antineoplastic Combined Chemotherapy Protocols | Breast Neoplasms | Breast Neoplasms | Breast Neoplasms | Chemotherapy, Adjuvant | Exercise | Female | Humans | Middle Aged | Neoplasm Staging | Quality of Life | Radiotherapy, Adjuvant</td> </tr> </tbody> </table>   If you use this dataset in your research, please cite our papers.

opencc-by-4.0Jan 2024View details →

Data inputs and results from AI-supported title and abstract screening "Lack of evidence regarding markers identifying acute heart failure in patients with COPD: an AI-supported systematic review"

These comma-separated data files were used to conduct the AI supported screening of [Lack of Evidence Regarding Markers Identifying Acute Heart Failure in Patients with COPD: An AI-supported Systematic Review (working title)], following the methodology described in the publication (URL/doi to be uploaded). These files provide insight into the AI-supported screening process and the choices made by the human reviewer.

Compilation of parallel measurements comparing the temperatures recorded in Stevenson screens with those recorded in pre-Stevenson screen thermometer exposures

Compilation of parallel measurements comparing the temperatures recorded in Stevenson screens with those recorded in pre-Stevenson screen thermometer exposures. This dataset accompanies Wallis et al. (2024); further details of the dataset and its creation can be found in the attached readme file and Wallis et al. (2024). --- References Wallis, E.J., Osborn, T.J., Taylor, M., Jones, P.D., Joshi, M. & Hawkins, E. (2024) Quantifying exposure biases in early instrumental land surface air temperature observations. International Journal of Climatology, https://doi.org/10.1002/joc.8401

Dataset for the Endothelin-converting enzyme 1 antibody screening study

This project contains the following underlying data included in a study aimed at characterizing six antibodies agaisnt Endothelin-converting enzyme 1 (ECE1). The study is available on Zenodo (DOI: 10.5281/zenodo.7459248).

Dataset for the Angiogenin antibody screening study

This project contains the following underlying data included in a study aimed at characterizing three commercial antibodies against Angiogenin (ANG) protein. The study is available on Zenodo (DOI: 10.5281/zenodo.7671286).

Dataset for the Sphingosine 1-phosphate receptor 1 (S1PR1) antibody screening study

This antibody characterization dataset is related to the F1000 research article openly available at F1000Research. This project contains the following underlying data included in a study aimed at characterizing nine commercial antibodies against Sphingosine 1-phosphate receptor 1 (S1PR1) protein, encoded by S1PR1 gene. The study is available on Zenodo (<a href="https://doi.org/10.5281/zenodo.10819189">https://doi.org/10.5281/zenodo.10819189</a>). The Dataset is in the format of a zip file. Once downloaded, please expand the zip file to access the folders containing the underlying data for Western blot (Wb), immunoprecipitation (IP) and immunofluorescence (IF).

Dataset for the Prolow-density lipoprotein receptor-related protein1 (LRP-1) antibody screening study

This project contains the following underlying data included in a study aimed at characterizing ten commercial antibodies against Prolow-density lipoprotein receptor-related protein 1 (LRP-1) protein, encoded by LRP1 gene. The study is available on Zenodo (DOI:10.5281/zenodo.7971951).

Dataset for the QPRTase (Nicotinate-nucleotide pyrophosphorylase [carboxylating]) antibody screening study

This project contains the following underlying data included in a study aimed at characterizing four commercial antibodies against Nicotinate-nucleotide pyrophosphorylase [carboxylating] (QPRTase) protein, encoded by the QPRT gene. The study is available on Zenodo (DOI: 10.5281/zenodo.7459387).

Dataset for the Calponin-3 antibody screening study

This dataset contains the following underlying data included in a study aiming at characterizing eight commercial antibodies for the Calponin-3 (CNN3) protein. The study is available on Zenodo (DOI: 10.5281/zenodo.8356134).