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40 results for “secondary contact zone”
Data from: Does competitive interaction drive species recognition in a house mouse secondary contact zone?
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Data from: Inferring the degree of incipient speciation in secondary contact zones of closely related lineages of Palearctic green toads (Bufo viridis subgroup)
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Data from: Interspecific competition promotes habitat and morphological divergence in a secondary contact zone between two hybridizing songbirds
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Data from: Phylogeography of the Neotropical epiphytic orchid, Brassavola nodosa: evidence for a secondary contact zone in northwestern Costa Rica
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Secondary contact zones of closely-related Erebia butterflies overlap with narrow phenotypic and parasitic clines
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Parasite turnover zone at secondary contact: a new pattern in host-parasite population genetics
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Data from: Timeframe of speciation inferred from secondary contact zones in the European tree frog radiation (Hyla arborea group)
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Fig. 10 in Introgression at the emerging secondary contact zone of magpie Pica pica subspecies (Aves: Corvidae): integrating data on nuclear and mitochondrial markers, vocalizations, and field observations
Fig. 10 Spectrograms of chatter calls of pure P. p. leucoptera, pure P. p. jankowskii, and hybrids. a leucoptera, pair #4, Choibalsan, eastern Mongolia. b jankowskii, pair #6, Vladivostok, Russian Far East. c, d Bilingual hybrid, the same bird from the pair #24, Kerulen, eastern Mongolia. e Hybrid with mixed call, pair #39, Kerulen. f Presumably hybrid with mixed call, pair #5, Kerulen. X-axis—time in s; Y-axis—frequency in kHz
Fig. 8 in Introgression at the emerging secondary contact zone of magpie Pica pica subspecies (Aves: Corvidae): integrating data on nuclear and mitochondrial markers, vocalizations, and field observations
Fig. 8 Genetic structure of the contact zone and its vicinities by mtDNA and SNPs. Above—distribution of haplotypes of mitochondrial CR along conditional population numbers I–VI depicted in Fig. 3. Green—western haplotype; red—eastern haplotype. Below— graphical representation of individual contributions from nuclear
Fig. 3 in Introgression at the emerging secondary contact zone of magpie Pica pica subspecies (Aves: Corvidae): integrating data on nuclear and mitochondrial markers, vocalizations, and field observations
Fig. 3 Map of sampling localities for nuclear SNP analysis. Distribution of genotypes of nuclear SNPs revealed by ddRAD analysis are shown with blue circles for Pica pica leucoptera and red circles for Pica pica jankowskii. Bi-colored circles mean mixed (hybrid) genotype: portion of blue/red corresponds to probability of it belonging to one of the groups, as revealed in the Structure analysis. Numbers
Fig. 1 in Introgression at the emerging secondary contact zone of magpie Pica pica subspecies (Aves: Corvidae): integrating data on nuclear and mitochondrial markers, vocalizations, and field observations
Fig. 1 Map of Pica pica s.l. subspecies. The study area in the contact zone is indicated by a rectangle. Question marks indicate regions of unclear subspecies distribution. The white star indicates the terra typica for Pica pica anderssoni in eastern China
Data from: Revisiting the Iberian honey bee (Apis mellifera iberiensis) contact zone: maternal and genome-wide nuclear variation provide support for secondary contact from historical refugia
Dissecting diversity patterns of organisms endemic to Iberia has been truly challenging for a variety of taxa, and the Iberian honey bee is no exception. Surveys of genetic variation in the Iberian honey bee are among the most extensive for any honey bee subspecies. From these, differential and complex patterns of diversity have emerged, which have yet to be fully resolved. Here, we used a genome-wide data set of 309 neutrally tested single nucleotide polymorphisms (SNPs), scattered across the 16 honey bee chromosomes, which were genotyped in 711 haploid males. These SNPs were analysed along with an intergenic locus of the mtDNA, to reveal historical patterns of population structure across the entire range of the Iberian honey bee. Overall, patterns of population structure inferred from nuclear loci by multiple clustering approaches and geographic cline analysis were consistent with two major clusters forming a well-defined cline that bisects Iberia along a northeastern–southwestern axis, a pattern that remarkably parallels that of the mtDNA. While a mechanism of primary intergradation or isolation by distance could explain the observed clinal variation, our results are more consistent with an alternative model of secondary contact between divergent populations previously isolated in glacial refugia, as proposed for a growing list of other Iberian taxa. Despite current intense honey bee management, human-mediated processes have seemingly played a minor role in shaping Iberian honey bee genetic structure. This study highlights the complexity of the Iberian honey bee patterns and reinforces the importance of Iberia as a reservoir of Apis mellifera diversity.
Figure 3 from: Matern A, Drees C, Hardtle W, von Oheimb G, Assmann T (2011) Historical ecology meets conservation and evolutionary genetics: a secondary contact zone between Carabus violaceus (Coleoptera, Carabidae) populations inhabiting ancient and recent woodlands in north-western Germany. ZooKeys 100: 545-563. https://doi.org/10.3897/zookeys.100.1546
Figure 3 - Correlogram showing the result of spatial autocorrelation analysis at three allozyme loci. Genetic distances D (Nei 1972) are indicated for the population pairs of the respective distance classes (squares). Dashed lines show the 95% confidence interval (1000 permutations) under the null hypothesis of spatially random differentiation. Significant deviations from the mean are indicated by filled squares (p < 0.05).
Figure 4 from: Matern A, Drees C, Hardtle W, von Oheimb G, Assmann T (2011) Historical ecology meets conservation and evolutionary genetics: a secondary contact zone between Carabus violaceus (Coleoptera, Carabidae) populations inhabiting ancient and recent woodlands in north-western Germany. ZooKeys 100: 545-563. https://doi.org/10.3897/zookeys.100.1546
Figure 4 - Maximum width of the aedeagus tip A and the quotient of maximum and minimum width of the aedeagus tip B are plotted for each population. Boxes display 25–75%- quartiles and bars indicate medians. Whiskers show the total range of values without outliers. Outliers are indicated as circles and extreme outliers as diamonds. Numbers of measured individuals per population are shown in brackets. Pie charts show frequencies of elytral sculpture classes "0" (white), "1" (grey), and "2" (black) in each population. Significant differences between populations are indicated by the lines marked with asterisks.
Figure 1 from: Matern A, Drees C, Hardtle W, von Oheimb G, Assmann T (2011) Historical ecology meets conservation and evolutionary genetics: a secondary contact zone between Carabus violaceus (Coleoptera, Carabidae) populations inhabiting ancient and recent woodlands in north-western Germany. ZooKeys 100: 545-563. https://doi.org/10.3897/zookeys.100.1546
Figure 1 - Carabus violaceus populations studied and proportion of specimens with different elytron sculptures (pie charts). White sections indicate the frequencies of smooth elytra, black sections indicate the frequencies of more than three striae per elytron, and grey sections indicate the frequencies of intermediate phenotypes, i.e. class "1". Numbers next to the pie charts indicate population number followed by sample size in brackets. The location of the study area is indicated as a white square on the map of Germany. Woodlands in the study region northwest of the town of Bramsche according to TK 50 3512 Bramsche (Landesvermessungsamt Niedersachsen 1998) are presented as striped patches. Size and position of ancient woodlands (black patches) are taken from the map by LeCoq (1805). In this study, these are called "Börsteler Wald" (in the north) and "Gehn" (in the south). White patches within woodlands indicate openings. Hedges are not shown.
Figure 2 from: Matern A, Drees C, Hardtle W, von Oheimb G, Assmann T (2011) Historical ecology meets conservation and evolutionary genetics: a secondary contact zone between Carabus violaceus (Coleoptera, Carabidae) populations inhabiting ancient and recent woodlands in north-western Germany. ZooKeys 100: 545-563. https://doi.org/10.3897/zookeys.100.1546
Figure 2 - Aedeagus tip of Carabus violaceus. 1 Maximum aedeagus width (AedMax), 2 minimum aedeagus width (AedMin), and 3 preputial field.
Data from: Revisiting the Iberian honey bee (Apis mellifera iberiensis) contact zone: maternal and genome-wide nuclear variation provide support for secondary contact from historical refugia
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Data from: Dobzhansky-Muller incompatibilities, dominance drive, and sex-chromosome introgression at secondary contact zones: a simulation study
Dobzhansky-Muller (DM) incompatibilities involving sex chromosomes have been proposed to account for Haldane's rule (lowered fitness among hybrid offspring of the heterogametic sex) as well as Darwin's corollary (asymmetric fitness costs with respect to the direction of the cross). We performed simulation studies of a hybrid zone to investigate the effects of different types of DM incompatibilities on cline widths and positions of sex-linked markers. From our simulations, X-Y incompatibilities generate steep clines for both X-linked and Y-linked markers; random effects may produce strong noise in cline center positions when migration is high relative to fitness costs, but X- and Y-centers always coincide strictly. X-autosome and Y-autosome incompatibilities also generate steep clines, but systematic shifts in cline centers occur when migration is high relative to selection, as a result of a dominance drive linked to Darwin's corollary. Interestingly, sex-linked genes always show farther introgression than the associated autosomal genes. We discuss ways of disentangling the potentially confounding effects of sex biases in migration, we compare our results to those of a few documented contact zones, and we stress the need to study independent replicates of the same contact zone.
Data from: Dobzhansky-Muller incompatibilities, dominance drive, and sex-chromosome introgression at secondary contact zones: a simulation study
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FIGURE 1 in Characterization of a secondary contact zone of the Great Tit Parus major and the Japanese Tit P. minor (Aves: Passeriformes) in Far Eastern Siberia with DNA markers.
FIGURE 1. Map showing the sampled populations in the Amur River Valley. Upper pies on each location show the frequency of major (blue) and minor (red) haplotypes and lower pies the mean probabilities of individuals being assigned to major or minor based on microsatellites.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.