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43 results for “spatial biology”
Рис. 6. Суточный бюΑжет времени основных виΑов ΑеятеΛьности поΑземной поΛевки (на примере активности ♂ № 4; июΛь 2000 г., манеж БиНИИ) Fig. 6. Daily time budget of the main activities of the common pine vole. (on the example of the activity of ♂ No. 4; July 2000, measured in a pen at the Scientific Research Institute of Biology) in Spatial Organization Of Common Pine Vole (Microtus Subterraneus Selys-Longchamps, 1836) Colonies
Рис. 6. Суточный бюΑжет времени основных виΑов ΑеятеΛьности поΑземной поΛевки (на примере активности ♂ № 4; июΛь 2000 г., манеж БиНИИ) Fig. 6. Daily time budget of the main activities of the common pine vole. (on the example of the activity of ♂ No. 4; July 2000, measured in a pen at the Scientific Research Institute of Biology)
Figure 2 from: Caubet Y, Richard F-J (2015) NEIGHBOUR-IN: Image processing software for spatial analysis of animal grouping. In: Taiti S, Hornung E, Štrus J, Bouchon D (Eds) Trends in Terrestrial Isopod Biology. ZooKeys 515: 173–189. https://doi.org/10.3897/zookeys.515.9390
Figure 2 - Virtual configurations used for software validation. Virtual configurations used to compile the data presented in the Table 1. Part 2.8 is one of the 10 replicates obtained with a random distribution. All other configurations have been designed in order to reach the desired level of aggregation and affinity between groups. The filled and empty shapes represented two virtual groups in the population.
Figure 1 from: Caubet Y, Richard F-J (2015) NEIGHBOUR-IN: Image processing software for spatial analysis of animal grouping. In: Taiti S, Hornung E, Štrus J, Bouchon D (Eds) Trends in Terrestrial Isopod Biology. ZooKeys 515: 173–189. https://doi.org/10.3897/zookeys.515.9390
Figure 1 - Flow chart of the creation of a new NEIGHBOUR-IN file. This figure presents the different steps in the creation of a new file, from the importation of the snapshot to the calculation of the statistics of dispersion.
Figure 4 from: Caubet Y, Richard F-J (2015) NEIGHBOUR-IN: Image processing software for spatial analysis of animal grouping. In: Taiti S, Hornung E, Štrus J, Bouchon D (Eds) Trends in Terrestrial Isopod Biology. ZooKeys 515: 173–189. https://doi.org/10.3897/zookeys.515.9390
Figure 4 - Spatial distribution in woodlice. Graphic outputs of spatial distribution patterns obtained in three configurations with monospecific or bispecific populations including two groups of eight individuals: a PD-PD: The two groups are Porcellio dilatatus (red and green) b PD-PS: Porcellio dilatatus (red) and Porcellio scaber (green) c PD-AV: Porcellio dilatatus (red) and Armadillidium vulgare (green). The outputs show 64 cells. Each cell is represented with a colour corresponding to the individual(s) in that cell. The colour is mixed using green and red proportional to the number of green and red individuals. If the cell is empty, the colour is black. The intensity of the colour reflects the number of individuals. The position of the individual is determined by its point G (centre-point).
Figure 3 from: Caubet Y, Richard F-J (2015) NEIGHBOUR-IN: Image processing software for spatial analysis of animal grouping. In: Taiti S, Hornung E, Štrus J, Bouchon D (Eds) Trends in Terrestrial Isopod Biology. ZooKeys 515: 173–189. https://doi.org/10.3897/zookeys.515.9390
Figure 3 - Aggregation heterogeneity in woodlice. Aggregation patterns of two groups of woodlice illustrating the Aggregation Heterogenity Index (AHI) and the Spatial Mixed Index (SMI). PD: Porcellio dilatatus, PS: Porcellio scaber, CC: Cylisticus convexus. Values of indexes: PD-PD: AHI=0.93 & SMI=0.80; PD-PS: AHI=0.67 & SMI=0.60; PD-CC: AHI=0.63 & SMI=0.33.
Figure 4 from: Ferreira RL, Martins VM, Paixão ER, Silva MS (2015) Spatial and temporal fluctuations of the abundance of Neotropical cave-dwelling moth Hypena sp. (Noctuidae, Lepidoptera) influenced by temperature and humidity. Subterranean Biology 16: 47-60. https://doi.org/10.3897/subtbiol.16.5137
Figure 4 - Spatial distribution maps of Hypena sp. demonstrating different densities between seasons. In the dry seasons (17/07/1999 and 10/07/2000) individuals are located in the deepest region of the cave, an opposite pattern during rainy seasons (16/01/2000 and 19/01/2001) when the population of individuals becomes denser in the region near the cave entrance. Blue colors indicate low densities while light yellow colors indicate high densities.
Figure 1 from: Ferreira RL, Martins VM, Paixão ER, Silva MS (2015) Spatial and temporal fluctuations of the abundance of Neotropical cave-dwelling moth Hypena sp. (Noctuidae, Lepidoptera) influenced by temperature and humidity. Subterranean Biology 16: 47-60. https://doi.org/10.3897/subtbiol.16.5137
Figure 1 - A Photograph indicating the cave entrance and the surrounding region, whose native forest was turned into pasture B Conduit located in the area near the entrance C Individuals of Hypena sp. resting on the cave wall.
Figure 3 from: Ferreira RL, Martins VM, Paixão ER, Silva MS (2015) Spatial and temporal fluctuations of the abundance of Neotropical cave-dwelling moth Hypena sp. (Noctuidae, Lepidoptera) influenced by temperature and humidity. Subterranean Biology 16: 47-60. https://doi.org/10.3897/subtbiol.16.5137
Figure 3 - Spatial Point Pattern Analysis of the second monitoring (January 2000). A Dot map and (B), shows the estimations of the function K (r is the distance argument, Dashed line corresponds to the theoretical value of this function is Complete Spatial Randomness and solid lineis the Observed value of the K function for the date pattern) C Map Kernel Estimates of intensity.
Figure 2 from: Ferreira RL, Martins VM, Paixão ER, Silva MS (2015) Spatial and temporal fluctuations of the abundance of Neotropical cave-dwelling moth Hypena sp. (Noctuidae, Lepidoptera) influenced by temperature and humidity. Subterranean Biology 16: 47-60. https://doi.org/10.3897/subtbiol.16.5137
Figure 2 - A Variation in temperature and humidity along the Taboa cave, showing a tendency to stabilize in the deeper parts of the cave. The table shows the section in which the Hypena sp specimens were collected (B) Change in abundance over the transects, the arrow indicates the spatial extent where the effects of the surface seasonality promote decrease and expansion in the population distribution.
Figure 3 from: Pellegrini TG, Sales LP, Aguiar P, Ferreira RL (2016) Linking spatial scale dependence of land-use descriptors and invertebrate cave community composition. Subterranean Biology 18: 17-38. https://doi.org/10.3897/subtbiol.18.8335
Figure 3 - Detailed figure of Gruta Helictites showing different land uses within the 50, 100 and 250 m buffers.
Figure 2 from: Pellegrini TG, Sales LP, Aguiar P, Ferreira RL (2016) Linking spatial scale dependence of land-use descriptors and invertebrate cave community composition. Subterranean Biology 18: 17-38. https://doi.org/10.3897/subtbiol.18.8335
Figure 2 - Study area location, sampling design used in sampled caves at "Parque Estadual do Sumidouro", and the Buffers of 50m, 100m, and 250m for analyzing the effect of spatial scale on the explanatory power of environmental variables in the cave invertebrate communities.
Figure 1 from: Pellegrini TG, Sales LP, Aguiar P, Ferreira RL (2016) Linking spatial scale dependence of land-use descriptors and invertebrate cave community composition. Subterranean Biology 18: 17-38. https://doi.org/10.3897/subtbiol.18.8335
Figure 1 - Spatial characterization of landscape at "Parque Estadual do Sumidouro". Different colors represent distinct vegetation cover or land-use types. The numbers indicate the sampled caves, indicated by name. Legend: 1 Gruta Ninho de Pérolas 2 Gruta Macaco das Cavernas 3 Lapa da Várzea 4 Gruta do Grilão 5 Gruta Helictites 6 Lapa das Pacas 7 Gruta do Sumidouro 8 Gruta Lagoa Seca 9 Gruta do Feneme 10 Gruta do Lixo.
Supporting data for Boron and Deere et al. (Current Biology, 2023): "Habitat modification destabilizes spatial associations and persistence of Neotropical carnivores"
<p>Data underpinning the Current Biology publication "Habitat modification destabilizes spatial associations and persistence of Neotropical carnivores" (doi.org/10.1016/j.cub.2023.07.064). Species detection data for 11 Neotropical carnivores obtained using camera trap methods across a gradient of human habitat modification. Cameras were deployed across 468 sampling locations distributed across nine study landscapes in Colombia. Site-level covariates detailing forest extent, habitat quality and proximity to key environmental resources are also provided. These data were implemented to assess spatial associations between sympatric carnivores across gradients of human habitat modification. </p>
Spatial Transcriptomics of Intraductal Papillary Mucinous Neoplasms of The Pancreas Identifies NKX6-2 Expression as a Driver of Gastric Differentiation and Indolent Biological Potential
GEO Series GSE233254. Homo sapiens; Mus musculus. 33 samples. Type: Expression profiling by high throughput sequencing; Other.
Spatial analysis of microRNA regulation at defined tumor hypoxia levels reveals biological traits of aggressive prostate cancer [cell lines]
GEO Series GSE256391. Homo sapiens. 47 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Comparison of skin spatial transciptomics before and after IL-1-targeted biological treatment in Pityriasis rubra pilaris
GEO Series GSE264192. Homo sapiens. 51 samples. Type: Other.
Spatial analysis of microRNA regulation at defined tumor hypoxia levels reveals biological traits of aggressive prostate cancer
GEO Series GSE259218. Homo sapiens. 48 samples. Type: Expression profiling by array.
Spatially exploring RNA biology in archival formalin-fixed paraffin-embedded tissues
GEO Series GSE274641. Homo sapiens; Mus musculus. 11 samples. Type: Other.
The spatial signature of introgression after a biological invasion with hybridization
<p><strong>Simulated Data and Custom Scripts</strong></p> <p>This repository contains data for performing simulations with SPLATCHE3 and the custom R scripts used in the following manuscript: Quilodrán CS, Tsoupas A and M Currat. 2020. The spatial signature of introgression after a biological invasion with hybridization. Frontiers in Ecology and Evolution.</p> <p>There are three main folders (.zip files): </p> <ul> <li>Settings: the setting files of SPLATCHE3 used in all explored scenarios. The example folder for each scenario (01_newset) contains the setting file and setting folder needed to run SPLATCHE3. This example folder contains a single simulation of the interbreeding rate (MigrRate_P1_to_P2 and MigrRate_P2_to_P1) that generates an output of 10,000 simulated loci. The folder also contains a public version of SPLATCHE3 for Linux. The software version for other platforms (Mac OS X and Windows) can be obtained from “http://www.splatche.com/splatche3".</li> <li>Results: all results obtained in the different scenarios. The three simulations in a square world are presented for the invasive (NC files) and local organisms (NCbis). The neanderthal scenario presents the simulated proportion of introgression in modern humans sampled in France and China. </li> <li>Rcustom: custom R functions and files used for plotting the results. </li> </ul> <p>There are also four R scripts for plotting all main figures in the manuscript. </p> <p><strong>Acknowledgments </strong><br> This study was financed by grants from the Swiss National Science Foundation n° 31003A_182577 to MC and P400PB_183930 to CSQ. All computations were performed using the High-Performance Computing (HPC) cluster at baobab.unige.ch</p>
Eq 1 from: Pellegrini TG, Sales LP, Aguiar P, Ferreira RL (2016) Linking spatial scale dependence of land-use descriptors and invertebrate cave community composition. Subterranean Biology 18: 17-38. https://doi.org/10.3897/subtbiol.18.8335
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ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.