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25 results for “tara pacific”
rDNA 18S V9 ASVs (DADA2) from the Tara Pacific Expedition
<p>This repository contains datasets describing the DADA2 ASVs generated from the <em>Tara</em> Pacific expedition V9 18S rDNA metabarcoding sequencing data. The ASVs were generated were generated using the nf-core workflow ampliseq. Please refer to the readme file for more details.</p>
Tara Oceans Pacific Expedition
Data measured during the Tara Oceans Pacific Expedition, 2016-2018
Tara Pacific metabarcoding sequencing (16S, 18S, ITS2) reference & replication tables version 1
<p>The tables in this dataset associate metabarcoding sequencing files generated by Genoscope (i.e. fastq.gz files with informative filename structures; with sequencing file pairs associated to unique 'readset' identifiers; housed on their FTP server at www.genoscope.cns.fr/sadc/tarapacific/METABARCODING; with the 'METAB' sequence strategy identifier as part of the sequencing file name) with their associated 'sample-id_source' identifier; as detailed in the 'TARA-PACIFIC_samples-provenance' file part of the 'Tara Pacific samples provenance and environmental context' Zenodo publication (DOI: 10.5281/zenodo.4068292) part of the 'tarapacific' Zenodo community). The main purpose of these tables is to act as a reference to identify samples (i.e., with a single 'sample-id_source') for which sequencing replication exists, per primer set (i.e., more than one set of fastq.gz sequencing files were generated, pre primer set). In the case of replication, these tables classify the replication into three classes color coded as green (same DNA extraction, same PCR, same sequencing run, different sequencing lane), yellow (same DNA extraction, same PCR, different sequencing run) and red (different DNA extraction and/or different PCR). It should be noted that in the vast majority of cases a 'sample-id_source' associates to only one readset per primer set. For a full description of the dataset, please see the included README.</p>
Tara Pacific 16S rRNA data analysis release
<p>This data is the result of the primary analysis of the 16S rRNA gene sequencing data collected from all islands as part of the Tara Pacific expedition. The analysis was conducted using cutadapt/snakemake/dada2 and usearch. A full README is contained within the data upload.</p> <p> </p> <p><strong>Taxonomic abundance tables (ASVs, OTUs) released together with the TARA Pacific <a href="https://www.nature.com/collections/adgaiffggg">publications</a></strong><strong> can be found in <a href="https://zenodo.org/record/4451892">Version 1.1.0</a> of this repository. </strong></p>
rDNA 18S V9 ASV tables (SWARM) for Tara Pacific Expedition
<p>This data is the result of the second analysis of the V9 18S rDNA metabarcoding sequencing data from the <em>Tara</em> Pacific expedition. The analysis was conducted using cutadapt, vsearch, swarm and lulu. Please refer to the readme file for more details.</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.