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58 results for “taxonomic inference”
Figs. 3–10. Pseudips species. P in Taxonomic Review of Pseudips Cognato (Coleoptera: Curculionidae: Scolytinae: Ipini) Inferred from Morphology and a DNA-Based Phylogeny
Figs. 3–10. Pseudips species. P. concinnus, male: 3) Habitus, dorsal view; 4) Habitus, lateral view; 5) Frontal view; 6) Declivital view. P. orientalis, male holotype (USNMENT00912429): 7) Habitus, dorsal view; 8) Habitus, lateral view; 9) Frontal view; 10) Declivital view.
Figs. 19–26 in Taxonomic Review of Pseudips Cognato (Coleoptera: Curculionidae: Scolytinae: Ipini) Inferred from Morphology and a DNA-Based Phylogeny
Figs. 19–26. Pseudips radiatae. Male: 19) Habitus, dorsal view; 20) Habitus, lateral view; 21) Frontal view;
Fig. 1 in Taxonomic Review of Pseudips Cognato (Coleoptera: Curculionidae: Scolytinae: Ipini) Inferred from Morphology and a DNA-Based Phylogeny
Fig. 1. Approximate distribution (shading) based on listed localities (Atkinson 2024) and collection localities in Table 1 (symbols) of Pseudips concinnus (green shading and stars), P. mexicanus (blue shading and squares), and P. radiatae (red textured shading and circles) in western North America. The distribution of P. mexicanus continues into Chiapas and Guatemala.
Fig. 2 in Taxonomic Review of Pseudips Cognato (Coleoptera: Curculionidae: Scolytinae: Ipini) Inferred from Morphology and a DNA-Based Phylogeny
Fig. 2. Phylogeny of Pseudips and outgroup species represented by 1 of 696 most parsimonious trees based on COI and CAD DNA sequences. Relationships within clade B (P. radiatae) were unresolved in the strict consensus of the most parsimonious trees. Bootstrap values above 90 are given at nodes.
FIGURE 9. A in Phylogenetic relationships, taxonomic revision and new taxa of Termitomyces (Lyophyllaceae, Basidiomycota) inferred from combined nLSU- and mtSSU-rDNA sequences
FIGURE 9. A/B. Termitomyces subumkowaan (KM 143 969 = HUY1-DM 260B and HUY1-DM 260F). Arrows show one of the key macroscopic features which are the blackish to black colour of the stipe from the lower half of the thickening down to the whole pseudorhiza.
FIGURE 8 in Phylogenetic relationships, taxonomic revision and new taxa of Termitomyces (Lyophyllaceae, Basidiomycota) inferred from combined nLSU- and mtSSU-rDNA sequences
FIGURE 8. Termitomyces striatus form bibasidiatus (HUY1-DM 280). A. Basidiospores. B. Thin-walled Basidia. C. Thick-walled Basidia (sclerobasidia). D. Pleurocystidia. E. Cheilocystidia. Scale bars: A-E = 10 μm.
FIGURE 5 in Phylogenetic relationships, taxonomic revision and new taxa of Termitomyces (Lyophyllaceae, Basidiomycota) inferred from combined nLSU- and mtSSU-rDNA sequences
FIGURE 5. Termitomyces letestui (facies 2) (KM 144 286 = HUY1-DM 213E). A. Young basidiocarp with long underground pseudorhiza (right arrow). B/C. mature basidiocarps with (B) perforatorium (arrow) and without (C) perforatorium (right arrow).
FIGURE 12. A in Phylogenetic relationships, taxonomic revision and new taxa of Termitomyces (Lyophyllaceae, Basidiomycota) inferred from combined nLSU- and mtSSU-rDNA sequences
FIGURE 12. A. Termitomyces medius (HUY1-DM 372G, holotype): arrow shows the conspicuous perforatorium. B/C Termitomyces medius form ochraceus (HUY1-DM 602B, holotype): arrow shows the absent or inconspicuous perforatorium. Basidiomes B and C removed from ethanol (90°) conservation. Description was done on freshly collected basidiomes before dipping them in ethanol. D/E. T. brunneopileatus (KM 144 300 = HUY1-DM 392 and KM 144 301 = HUY1-DM 394, holotypes).
FIGURE 7. A in Phylogenetic relationships, taxonomic revision and new taxa of Termitomyces (Lyophyllaceae, Basidiomycota) inferred from combined nLSU- and mtSSU-rDNA sequences
FIGURE 7. A. Termitomyces striatus form bibasidiatus (HUY1-DM 280B) with a long underground pseudorhiza (Fig. 7A arrow). B/C/D Termitomyces striatus form subclypeatus [(KM 143 968 = HUY1-DM 370B with an acute to spiniform perforatorium (Fig. 7D arrow) and HUY1-DM 151 with a twisted stipe (Fig. 7B: arrow)].
FIGURE 4. A in Phylogenetic relationships, taxonomic revision and new taxa of Termitomyces (Lyophyllaceae, Basidiomycota) inferred from combined nLSU- and mtSSU-rDNA sequences
FIGURE 4. A. Termitomyces letestui (facies 1) (KM 144 285 = HUY1-DM 150D, holotype). The arrows show the pseudorhiza (top arrow) and the cylindrical-mammiform perforatorium (bottom arrow).
FIGURE 2 in Phylogenetic relationships, taxonomic revision and new taxa of Termitomyces (Lyophyllaceae, Basidiomycota) inferred from combined nLSU- and mtSSU-rDNA sequences
FIGURE 2. Most likelyhood tree showing phylogenetic relationships in Termitomyces. Tree obtained with RAxML using a combined nLSU-mtSSU dataset. Bootstrap values are available in Fig. 1. The tree is rooted with Lyophyllum semitale, L. descates and L. ambustum. Names in bold represent new taxa, those followed by a star (*) are confirmed new taxa from previous studies and names followed by a black hexagon (■) are taxa whose initial names changed in accordance with their placement on the tree.
FIGURE 3 in Phylogenetic relationships, taxonomic revision and new taxa of Termitomyces (Lyophyllaceae, Basidiomycota) inferred from combined nLSU- and mtSSU-rDNA sequences
FIGURE 3. Termitomyces letestui (KM 144 285 = HUY1-DM 150D, holotype and KM 144286 = HUY1-DM 213E). A. Basidiospores. B. Basidia. C. Pleurocystidia. D. Cheilocystidia. Scale bars: A-D = 10 μm.
FIGURE 13 in Phylogenetic relationships, taxonomic revision and new taxa of Termitomyces (Lyophyllaceae, Basidiomycota) inferred from combined nLSU- and mtSSU-rDNA sequences
FIGURE 13. Termitomyces medius form ochraceus (HUY1-DM 602B, holotype). A. Basidiospores. B. Basidia. C. Cheilocystidia. D. Pleurocystidia. E. Pileipellis. Scale bars: A-D = 10 μm. E= 20 μm.
FIGURE 14 in Phylogenetic relationships, taxonomic revision and new taxa of Termitomyces (Lyophyllaceae, Basidiomycota) inferred from combined nLSU- and mtSSU-rDNA sequences
FIGURE 14. Termitomyces brunneopileatus (KM 144 300 = HUY1-DM 392 and KM 144 301 = HUY1-DM 394, holotypes). A. Basidiospores. B. Basidia. C. Cheilocystidia. D. Pleurocystidia. E. Pileipellis. F. Longitudinal section of the perforatorium. Scale bars: A-F = 10 μm.
FIGURE 1 in Phylogenetic relationships, taxonomic revision and new taxa of Termitomyces (Lyophyllaceae, Basidiomycota) inferred from combined nLSU- and mtSSU-rDNA sequences
FIGURE 1. Bootstrap consensus tree showing phylogenetic relationships in Termitomyces. Tree obtained with RAxML using a combined nLSU-mtSSU dataset. Bootstrap values superior to 50% are reported above the clades and sub-clades. The tree is rooted with Lyophyllum semitale, L. descates and L. ambustum. Names in bold represent new taxa, those followed by a star (*) are confirmed new taxa from previous studies and names followed by a black hexagon (■) are taxa whose initial names changed in accordance with their placement on the tree.
FIGURE 6 in Phylogenetic relationships, taxonomic revision and new taxa of Termitomyces (Lyophyllaceae, Basidiomycota) inferred from combined nLSU- and mtSSU-rDNA sequences
FIGURE 6. Termitomyces striatus form subclypeatus (KM 143 968 = HUY1-DM 370B, holotype and HUY1-DM 151, HUY1-DM 151C). A. Basidiospores. B. Basidia. C. Cheilocystidia. Scale bars: A-C = 10 μm.
FIGURE 11 in Phylogenetic relationships, taxonomic revision and new taxa of Termitomyces (Lyophyllaceae, Basidiomycota) inferred from combined nLSU- and mtSSU-rDNA sequences
FIGURE 11. Termitomyces medius (HUY1-DM 372G). A. Basidiospores. B. Basidia. C. Pleurocystidia (thin- and thick-walled). D. Cheilocystidia (thin- and thick-walled). Scale bars: A-B = 10 μm. C-D = 10 μm.
FIGURE 10 in Phylogenetic relationships, taxonomic revision and new taxa of Termitomyces (Lyophyllaceae, Basidiomycota) inferred from combined nLSU- and mtSSU-rDNA sequences
FIGURE 10. Termitomyces subumkowaan (KM 143 969 = HUY1-DM 260B and HUY1-DM 260F). A. Basidiospores. B. Basidia and Basidioles C. Caulocystidia. D. Cheilocystidia. Scale bars: A-B-C = 10 μm. C = 100 μm.
FIGURE 2 in Taxonomic status of Euzonitis haroldi (Heyden, 1870) (Coleoptera: Meloidae) inferred from morphological and molecular data
FIGURE 2. Elytral patterns in Euzonitis quadrimaculata. Pattern B corresponds to E. haroldi phenotype. Frequency of each pattern in the Iberian Peninsula (n = 195): a: 0 %; b: 7.7 %; c: 0.5 %; d: 1.5 %; e: 62.6 %; f: 0.5 %; g: 0.5%; h: 3.1 %; i: 7.7 %; j: 7.7 %; k: 3.1 %; l: 5.1 %. Frequency of each pattern in Morocco (n = 22): a: 86.4 %; e: 9.1 %; l: 4.5 %.
FIGURE 1 in Taxonomic status of Euzonitis haroldi (Heyden, 1870) (Coleoptera: Meloidae) inferred from morphological and molecular data
FIGURE 1. Habitus of Euzonitis quadrimaculata (Torrelaguna, Madrid, Spain). a: E. haroldi phenotype. b: Typical phenotype.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.