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Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
37
datasets available to search
ShareScore release 0.9.0
Dataset results
37 results for “umi”
zUMIs: a fast and flexible pipeline for RNA sequencing data with UMIs
GEO Series GSE99822. Homo sapiens. 96 samples. Type: Expression profiling by high throughput sequencing.
STAG proteins mediate heterochromatin organization to support translation and cell identity [UMI-4C]
GEO Series GSE160015. Mus musculus. 14 samples. Type: Other.
UMI-count modeling and differential expression analysis for single-cell RNA sequencing
GEO Series GSE113660. Homo sapiens. 10 samples. Type: Expression profiling by high throughput sequencing.
Explore Intra-tumor Heterogeneity and Prognostic Value of Postoperative Blood ctDNA of ⅡA - ⅢA Stage Non-squamous NSCLC Based on the Capture-based Sequencing and UMI Technology of Burning Rock
ClinicalTrials.gov study NCT03337711. IPD Sharing: UNDECIDED. Countries: 1. Publications: 0.
UMI-RNAseq for NIH3T3 cell line
GEO Series GSE181685. Mus musculus. 3 samples. Type: Expression profiling by high throughput sequencing.
The histone variant macroH2A modulates inflammatory response in cancer [UMI-4C]
GEO Series GSE203475. Homo sapiens. 19 samples. Type: Other.
UMI-based, single cell RNA sequencing of human nasal epithelial cells grown for 33 days at air liquid interface
GEO Series GSE89237. Homo sapiens. 96 samples. Type: Expression profiling by high throughput sequencing.
LINE1 elements at Distal Junctions of rDNA repeats regulate nucleolar organization in human embryonic stem cells [UMI-4C]
GEO Series GSE268665. Homo sapiens. 30 samples. Type: Other.
CTCF knockout in zebrafish induces alterations in regulatory landscapes and developmental gene expression [UMI-4C]
GEO Series GSE156098. Danio rerio. 36 samples. Type: Other.
Transcriptome profiling of single HEK293 cells with UMIs on Ion Torrent Proton (Run 20150702)
GEO Series GSE89234. Homo sapiens. 38 samples. Type: Expression profiling by high throughput sequencing.
the effect of UMI-77 on HGPS-MSCs gene expression during cellular senescence
GEO Series GSE243251. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
UMI-4C for quantitative and targeted chromosomal contact profiling
GEO Series GSE87209. Drosophila melanogaster. 58 samples. Type: Other.
UMI-count modeling and differential expression analysis for single-cell RNA sequencing
GEO Series GSE135564. Homo sapiens. 2 samples. Type: Expression profiling by high throughput sequencing.
Molecule template estimation using Validator Barcodes as an alternative to UMIs in multiplex PCR for adaptive immune repertoire profiling
GEO Series GSE297422. Mus musculus; Homo sapiens. 18 samples. Type: Other.
UMI-4C data from Sungalee et al. for lymphoma cell lines
<p><strong>UMI-4C datasets</strong> generated in Sungalee et al. are provided as raw fastq sequencing files</p> <p>The following target_regions/lymphoma cell lines/conditions are available:</p> <ul> <li>BCL11A WSU-DLCL2 DMSO</li> <li>BCL11A WSU-DLCL2 A-485 48h</li> <li>BCL11A DoHH2 Vector</li> <li>BCL11A DoHH2 dCas9-KRAB sgRNA2</li> <li>BCL11A K562 Vector</li> <li>BCL11A K562 dCas9-EP300 sgRNA2</li> <li>BCL6/MYC FWD WSU-DLCL2 DMSO</li> <li>BCL6/MYC REV WSU-DLCL2 A485</li> </ul> <p> </p> <ul> </ul>
LOESS-Corrected UMI Counts Enable Absolute RNA Quantification in Single-Cell Transcriptomics
GEO Series GSE291906. Rattus norvegicus. 1 samples. Type: Expression profiling by high throughput sequencing.
Accurate profiling of full length Fv in highly homologous antibody libraries using UMI tagged short reads
<p>Data consists of raw Illumina MiSeq 2x250bp reads from the Fab mini library mix as described in the journal publication "Accurate profiling of full length Fv in highly homologous antibody libraries using UMI tagged short reads".</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.