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40 results for “urban-rural”
Data from: Population structure of the Chagas disease vector, Triatoma infestans, at the urban-rural interface
The increasing rate of biological invasions resulting from human transport or human-mediated changes to the environment have had devastating ecologic and public health consequences. The kissing bug, Triatoma infestans, has dispersed through the Peruvian city of Arequipa. The biological invasion of this insect has resulted in a public health crisis, putting thousands of residents of this city at risk of infection by Trypanosoma cruzi and subsequent development of Chagas disease. Here we show that populations of Tria. infestans in geographically distinct districts within and around this urban center share a common recent evolutionary history although current gene flow is restricted even between proximal sites. The population structure among the Tria. infestans in different districts is not correlated with the geographic distance between districts. These data suggest that migration among the districts is mediated by factors beyond the short-range migratory capabilities of Tria. Infestans and that human movement has played a significant role in the structuring of the Tria. infestans population in the region. Rapid urbanization across southern South America will continue to create suitable environments for Tria. infestans and knowledge of its urban dispersal patterns may play a fundamental role in mitigating human disease risk.
Urbanization impacts apex predator gene flow but not genetic diversity across an urban-rural divide
<p>Apex predators are important indicators of intact natural ecosystems. They are also sensitive to urbanization because they require broad home ranges and extensive contiguous habitat to support their prey base. Pumas (<i>Puma concolor</i>) can persist near human developed areas, but urbanization may be detrimental to their movement ecology, population structure, and genetic diversity. To investigate potential effects of urbanization in population connectivity of pumas, we performed a landscape genomics study of 130 pumas on the rural Western Slope and more urbanized Front Range of Colorado, USA. Over 12,000 single nucleotide polymorphisms were genotyped using double-digest, restriction site-associated DNA sequencing (ddRADseq). We investigated patterns of gene flow and genetic diversity, and tested for correlations between key landscape variables and genetic distance to assess the effects of urbanization and other landscape factors on gene flow. Levels of genetic diversity were similar for the Western Slope and Front Range, but effective population sizes were smaller, genetic distances were higher, and there was more admixture in the more urbanized Front Range. Forest cover was strongly positively associated with puma gene flow on the Western Slope, while impervious surfaces restricted gene flow and more open, natural habitats enhanced gene flow on the Front Range. Landscape genomic analyses revealed differences in puma movement and gene flow patterns in rural versus urban settings. Our results highlight the utility of dense, genome-scale markers to document subtle impacts of urbanization on a wide-ranging carnivore living near a large urban center.</p>
Anthropogenic noise reduces avian feeding efficiency and increases vigilance along an urban-rural gradient regardless of species’ tolerances to urbanisation
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Data from: Evolution, not transgenerational plasticity, explains the adaptive divergence of acorn ant thermal tolerance across an urban-rural temperature cline
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Urbanization impacts apex predator gene flow but not genetic diversity across an urban-rural divide
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Data from: Population structure of the Chagas disease vector, Triatoma infestans, at the urban-rural interface
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Data from: Spatial heterogeneity in genetic relatedness among house sparrows along an urban-rural gradient as revealed by individual-based analysis
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Data from: Does urbanization promote floral diversification? Implications from changes in herkogamy with pollinator availability in an urban-rural area
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Data from: Functional diversity of phyllostomid bats in an urban-rural landscape: a scale-dependent analysis
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Land use effects on temperature and humidity along an urban-rural transect gradient in central Arizona-Phoenix: site locations
This study examines the effects of land use on microclimate along several commercial-to-rural land use transects in the greater Phoenix metropolitan area.
Caterpillar survival in the city: Attack rates on model lepidopteran larvae along an urban-rural gradient show no increase in predation with increasing urban intensity (Raw Data)
<p><span><span><span><span><span><span><span><span><span><span><span>Growing native plants in urban gardens is often promoted as a possible means of increasing lepidopteran populations. However, the efficacy of such efforts has not been well studied. Lepidopterans vary widely in their ability to survive in cities, and the few previous studies of caterpillar abundance or biomass across an urban-rural gradient have yielded mixed results. We placed clay caterpillar models in native plant gardens to assess whether the attack rate on these models varied with degree of urbanization (percent impervious surface within 1 km radius of each garden), and whether responses differed across predator taxa. We also examined how garden characteristics (plant biovolume density, plant species richness) affected probability of attack. Overall, attack rates on these models decreased with increasing impervious surface, although predator taxa varied in their sometimes complex responses. For parasitoid wasps, which accounted for 47% of all attacks, increasing biovolume density increased attack probability at impervious surface levels below 35%, but decreased the probability of attack at higher levels of impervious surface. In contrast, probabilities of attack by both predatory wasps and vertebrates decreased with increasing percent impervious surface, but did not vary with impervious surface for ants and spiders. Predation on caterpillars in urban gardens may be lower than in rural ones; however, this potential increase in survival may be a result of declines in some predator taxa, such as predatory wasps and insectivorous birds. More studies across an urban gradient are needed to measure factors other than predation that influence caterpillar survival in gardens.</span></span></span></span></span></span></span></span></span></span></span></p>
Data from: Rapid evolution of ant thermal tolerance across an urban-rural temperature cline
Rates of urbanization are accelerating worldwide. The increases in temperature associated with 'urban heat island' effects provide both an ecological imperative and a unique opportunity to explore the ecological and evolutionary mechanisms that underlie organismal responses to rapid environmental change. We used the acorn ant, Temnothorax curvispinosus (Mayr 1866), to compare shifts in thermal tolerance of ants from rural and urban habitats throughout Cleveland, USA. Urban warming in the region has been ongoing for the past century which translates to 20 or fewer acorn ant generations. Using a common garden experiment, we found gains in the ability to withstand high temperatures and losses in the ability to withstand cool temperatures among ants in urban habitats. Owing to the greater magnitude of phenotypic change in lower compared with upper tolerances, tolerance breadth decreased in urban habitats. Mechanistically, these shifts in thermal tolerance under urbanization reflected both evolutionary change and phenotypic plasticity, as ants from urban areas exhibited higher thermal tolerances compared with ants from rural areas regardless of rearing temperature, and ants reared in the warmer temperature treatment exhibited higher tolerances than ants reared in the cooler temperature treatment. We also found evidence of evolved plasticity as the slope of the response to warmer and colder rearing environments differed significantly among rural and urban populations. While much of the ecological forecasting literature focuses on plastic responses to environmental change, our study provides evidence of rapid evolution of thermal tolerances, and suggests the importance of including evolutionary responses in forecasts of organismal responses to climatic change.
Urban-rural collective expectations
<p>Dataset for Urban-rural collective expectations</p>
Caterpillar survival in the city: Attack rates on model lepidopteran larvae along an urban-rural gradient show no increase in predation with increasing urban intensity (Raw Data)
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Data from: Rapid evolution of ant thermal tolerance across an urban-rural temperature cline
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Phosphorus Forms and Associated Properties along an Urban-Rural Gradient in Southern China
<p>Urbanization is widely assumed to degrade soil ecosystem services, but the changes in urban soil phosphorus (P) status due to urbanization, and the associated environmental implications have rarely been studied. The objective of this study was to investigate the P forms and associated soil properties in urban soils. Thirty sites were selected along urban-rural gradient in Nanchang, China, to examine the effects of urbanization on soil P fractions. Residual P and NaOH-extractable P (NaOH-Pi and NaOH-Po) were the major P forms in the 0–30 cm of urban soils, comprising on average 37 and 43% of the total P pool, respectively, which was similar to the suburban and rural soils. Compared with non-urban soils, urban soil had higher contents of total P and P fractions (i.e., P<sub>H2O</sub>, P<sub>KCl</sub>, NaOH-Pi, P<sub>HCl</sub>, and residual P), as well as greater contents of related soil P-retentive properties, especially soil pH, Mehlich 3-extractable Ca and Mg. Phosphorus enrichment in the urban soils may become a source of aquatic pollution, because soil labile P content (sum of P<sub>H2O</sub> and P<sub>KCl</sub>) was positively related with total P, P<sub>HCl</sub>, NaOH-Pi, and residual P, which implied that the labile P can be replenished by these P pools. This study increased the understanding of P stabilization characteristics (e.g., the specific P forms) of urban soils and had further implications for urban environmental management.</p>
Low Elevation Coastal Zone (LECZ) Urban-Rural Population and Land Area Estimates, Version 3
The Low Elevation Coastal Zone (LECZ) Urban-Rural Population and Land Area Estimates, Version 3 data set contains land areas with urban, quasi-urban, rural, and total populations (counts) within the LECZ for 234 countries and other recognized territories for the years 1990, 2000, and 2015. This data set updates initial estimates for the LECZ population by drawing on a newer collection of input data, and provides a range of estimates for at-risk population and land area. Constructing accurate estimates requires high-quality and methodologically consistent input data, and the LECZv3 evaluates multiple data sources for population totals, digital elevation model, and spatially-delimited urban classifications. Users can find the paper "Estimating Population and Urban Areas at Risk of Coastal Hazards, 1990-2015: How data choices matter" (MacManus, et al. 2021) in order to evaluate selected inputs for modeling Low Elevation Coastal Zones. According to the paper, the following are considered core data sets for the purposes of LECZv3 estimates: Multi-Error-Removed Improved-Terrain Digital Elevation Model (MERIT-DEM), Global Human Settlement (GHSL) Population Grid R2019 and Degree of Urbanization Settlement Model Grid R2019a v2, and the Gridded Population of the World, Version 4 (GPWv4), Revision 11. This data set is produced by the Columbia University Center for International Earth Science Information Network (CIESIN) and the City University of New York (CUNY) Institute for Demographic Research (CIDR).
Low Elevation Coastal Zone (LECZ) Global Delta Urban-Rural Population and Land Area Estimates, Version 1
The Low Elevation Coastal Zone (LECZ) Global Delta Urban-Rural Population and Land Area Estimates, Version 1 data set provides country-level estimates of urban, quasi-urban, rural, and total population (count), land area (square kilometers), and built-up areas in river delta- and non-delta contexts for 246 statistical areas (countries and other UN-recognized territories) for the years 1990, 2000, 2014 and 2015. The population estimates are disaggregated such that compounding risk factors including elevation, settlement patterns, and delta zones can be cross-examined. The Intergovernmental Panel on Climate Change (IPCC) recently concluded that without significant adaptation and mitigation action, risk to coastal commUnities will increase at least one order of magnitude by 2100, placing people, property, and environmental resources at greater risk. Greater-risk zones were then generated: 1) the global extent of two low-elevation zones contiguous to the coast, one bounded by an upper elevation of 10m (LECZ10), and one by an upper elevation of 5m (LECZ05); 2) the extent of the world's major deltas; 3) the distribution of people and built-up area around the world; 4) the extents of urban centers around the world. The data are layered spatially, along with political and land/water boundaries, allowing the densities and quantities of population and built-up area, as well as levels of urbanization (defined as the share of population living in "urban centers") to be estimated for any country or region, both inside and outside the LECZs and deltas, and at two points in time (1990 and 2015). In using such estimates of populations living in 5m and 10m LECZs and outside of LECZs, policymakers can make informed decisions based on perceived exposure and vulnerability to potential damages from sea level rise.
Low Elevation Coastal Zone (LECZ) Urban-Rural Population and Land Area Estimates, Version 2
The Low Elevation Coastal Zone (LECZ) Urban-Rural Population and Land Area Estimates, Version 2 data set consists of country-level estimates of urban population, rural population, total population and land area country-wide and in LECZs for years 1990, 2000, 2010, and 2100. The LECZs were derived from Shuttle Radar Topography Mission (SRTM), 3 arc-second (~90m) data which were post processed by ISciences LLC to include only elevations less than 20m contiguous to coastlines; and to supplement SRTM data in northern and southern latitudes. The population and land area statistics presented herein are summarized at the low coastal elevations of less than or equal to 1m, 3m, 5m, 7m, 9m, 10m, 12m, and 20m. Additionally, estimates are provided for elevations greater than 20m, and nationally. The spatial coverage of this data set includes 202 of the 232 countries and statistical areas delineated in the Gridded Rural-Urban Mapping Project version 1 (GRUMPv1) data set. The 30 omitted areas were not included because they were landlocked, or otherwise lacked coastal features. This data set makes use of the population inputs of GRUMPv1 allocated at 3 arc-seconds to match the SRTM elevations, and at 30 arc-seconds resolution in order to reflect uncertainty levels in the product resulting from the interplay of input population data resolutions (based on census Units) and the elevation data. Urban and rural areas are differentiated by the GRUMPv1 Urban Extents. This data set is produced by the Columbia University Center for International Earth Science Information Network (CIESIN).
Low Elevation Coastal Zone (LECZ) Urban-Rural Population Estimates, Global Rural-Urban Mapping Project (GRUMP), Alpha Version
The Low Elevation Coastal Zone (LECZ) Urban-Rural Population Estimates consists of country-level estimates of urban, rural and total population and land area country-wide and in the LECZ, if applicable. Additionally, the data set provides the number of urban extents, their population and land area that intersect the LECZ, by city-size population classifications of less than 100,000, 100,000 to 500,000, 500,000 to 1,000,000, 1,000,000 to 5,000,000, and more than 5,000,000. All estimates are based on GRUMP Alpha data products. The LECZ was generated using SRTM Digital Elevation Model data and includes all land area that is contiguous with the coast and 10 meters or less in elevation. All grids used for population, land area, urban mask, and LECZ were of 30 arc-second (~1 km ) resolution. This data set is produced by the Columbia University Center for International Earth Science Information Network (CIESIN) in collaboration with the International Institute for Environment and Development (IIED).
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.