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Fig. 2 in Complete mitochondrial genomes of Chionomys roberti and Chionomys nivalis (Mammalia: Rodentia) from Turkey: Insight into their phylogenetic position within Arvicolinae
Fig. 2 Putative secondary structure of tRNAs for Chionomys haplotypes
Figure 2 in Complete mitochondrial genome of an Arctic Collared Lemming subspecies endemic to the Novaya Zemlya Archipelago, Russia
Figure 2. Gene map of Novaya Zemlya Collared Lemming Dicrostonyx torquatus ungulatus (von Baer, 1841) mitochondrial genome [topotype No. RMBH Lem16; GenBank accession No. MW401673]. Genes positioned inside the circle are encoded on the heavy strand, and genes outside the circle are encoded on the light strand. Color codes: Small and large ribosomal RNAs (red), transfer RNAs (purple), control region and OriL-strand (yellow), and PCGs genes (green).
Figure 1 in The complete mitochondrial genome of the leopard shark Triakis semifasciata (Triakidae)
Figure 1. Circular map of the mitochondrial genome of the leopard shark Triakis semifasciata.
Table 1 in Complete mitochondrial genome of the terrestrial isopod Cubaris murina Brandt, 1833: new family gene order and novel tRNA secondary structures
<p><b>Table 1.</b> Arrangement and annotation of the mitochondrial genome of Cubaris murina.</p><table><tbody><tr><th></th><th></th><th></th><th></th><th></th><th>Length</th><th></th><th></th><th></th><th></th></tr></tbody><tbody><tr><th>Name</th><td>Type</td><td>Start</td><td>Stop</td><td>Strand</td><td>(bp)</td><td>Start</td><td>Stop</td><td>Inter-genic space</td><td>Overlap</td></tr><tr><th>Cox1</th><td>Coding</td><td>1</td><td>1536</td><td>+</td><td>1536</td><td>ATG</td><td>TAA</td><td>1</td><td></td></tr><tr><th>trnL2(tta)</th><td>tRNA</td><td>1538</td><td>1598</td><td>+</td><td>61</td><td></td><td></td><td>48</td><td></td></tr><tr><th>Cox2</th><td>Coding</td><td>1647</td><td>2282</td><td>+</td><td>636</td><td>ATA</td><td>TAG</td><td></td><td>2</td></tr><tr><th>trnK(aaa)</th><td>tRNA</td><td>2281</td><td>2336</td><td>+</td><td>56</td><td></td><td></td><td></td><td>8</td></tr><tr><th>trnD(gac)</th><td>tRNA</td><td>2329</td><td>2403</td><td>+</td><td>75</td><td></td><td></td><td></td><td>17</td></tr><tr><th>atp8</th><td>Coding</td><td>2387</td><td>2533</td><td>+</td><td>147</td><td>ATA</td><td>TAA</td><td></td><td>4</td></tr><tr><th>atp6</th><td>Coding</td><td>2530</td><td>3192</td><td>+</td><td>663</td><td>ATA</td><td>TAA</td><td>2</td><td></td></tr><tr><th>Cox3</th><td>Coding</td><td>3195</td><td>3989</td><td>+</td><td>795</td><td>ATG</td><td>TAG</td><td></td><td>2</td></tr><tr><th>trnR(cga)</th><td>tRNA</td><td>3988</td><td>4055</td><td>+</td><td>68</td><td></td><td></td><td>55</td><td></td></tr><tr><th>nad3</th><td>Coding</td><td>4111</td><td>4407</td><td>+</td><td>297</td><td>ATA</td><td>TAA</td><td></td><td>9</td></tr><tr><th>trnA(gca)</th><td>tRNA</td><td>4399</td><td>4446</td><td>+</td><td>48</td><td></td><td></td><td></td><td>8</td></tr><tr><th>nad1 CR putative</th><td>Coding</td><td>4439 5219</td><td>5218 5360</td><td>−</td><td>780 142</td><td>ATG</td><td>TAG</td><td></td><td>14</td></tr><tr><th>NCR1</th><td>tRNA</td><td>5361</td><td>5429</td><td>+</td><td>69</td><td></td><td></td><td></td><td>17</td></tr><tr><th>rrnS</th><td>rRNA</td><td>5413</td><td>6139</td><td>+</td><td>727</td><td></td><td></td><td>48</td><td></td></tr><tr><th>trnW(tga)</th><td>tRNA</td><td>6188</td><td>6244</td><td>+</td><td>57</td><td></td><td></td><td></td><td>7</td></tr><tr><th>trnS1(aga)</th><td>tRNA</td><td>6238</td><td>6296</td><td>−</td><td>59</td><td></td><td></td><td></td><td></td></tr><tr><th>NCR2</th><td></td><td>6297</td><td>6666</td><td></td><td>370</td><td></td><td></td><td></td><td></td></tr><tr><th>trnL1(cta)</th><td>tRNA</td><td>6667</td><td>6731</td><td>−</td><td>65</td><td></td><td></td><td>29</td><td></td></tr><tr><th>cob</th><td>Coding</td><td>6759</td><td>7907</td><td>−</td><td>1,149</td><td>ATA</td><td>TAG</td><td>38</td><td></td></tr><tr><th>trnT(aca)</th><td>tRNA</td><td>7946</td><td>8017</td><td>−</td><td>72</td><td></td><td></td><td>29</td><td></td></tr><tr><th>nad5</th><td>Coding</td><td>8047</td><td>9648</td><td>+</td><td>1,602</td><td>ATG</td><td>TAG</td><td></td><td>3</td></tr><tr><th>trnF(ttc)</th><td>tRNA</td><td>9646</td><td>9707</td><td>+</td><td>62</td><td></td><td></td><td></td><td>15</td></tr><tr><th>trnH(cac)</th><td>tRNA</td><td>9693</td><td>9758</td><td>−</td><td>66</td><td></td><td></td><td></td><td>23</td></tr><tr><th>nad4</th><td>Coding</td><td>9736</td><td>11,082</td><td>−</td><td>1,312</td><td>ATA</td><td>TAA</td><td>13</td><td></td></tr><tr><th>nad4L</th><td>Coding</td><td>11,096</td><td>11,374</td><td>−</td><td>279</td><td>ATA</td><td>TAA</td><td></td><td>13</td></tr><tr><th>trnP(cca)</th><td>tRNA</td><td>11,362</td><td>11,422</td><td>−</td><td>61</td><td></td><td></td><td>25</td><td></td></tr><tr><th>nad6</th><td>Coding</td><td>11,448</td><td>11,903</td><td>+</td><td>456</td><td>ATA</td><td>TAG</td><td></td><td>2</td></tr><tr><th>trnS2(tca)</th><td>tRNA</td><td>11,902</td><td>11,962</td><td>+</td><td>61</td><td></td><td></td><td>17</td><td></td></tr><tr><th>rrnL</th><td>rRNA</td><td>11,980</td><td>12,549</td><td>−</td><td>570</td><td></td><td></td><td></td><td></td></tr><tr><th>NCR3</th><td></td><td>12,550</td><td>12,753</td><td></td><td>204</td><td></td><td></td><td></td><td></td></tr><tr><th>trnE(gaa)</th><td>tRNA</td><td>12,754</td><td>12,812</td><td>−</td><td>59</td><td></td><td></td><td></td><td></td></tr><tr><th>NCR4</th><td></td><td>12,813</td><td>12,950</td><td></td><td>138</td><td></td><td></td><td></td><td></td></tr><tr><th>trnV(gta)</th><td>tRNA</td><td>12,951</td><td>13,019</td><td>−</td><td>69</td><td></td><td></td><td></td><td>5</td></tr><tr><th>trnQ(caa)</th><td>tRNA</td><td>13,015</td><td>13,077</td><td>−</td><td>63</td><td></td><td></td><td></td><td>6</td></tr><tr><th>trnM(atg)</th><td>tRNA</td><td>13,072</td><td>13,141</td><td>+</td><td>70</td><td></td><td></td><td>25</td><td></td></tr><tr><th>nad2</th><td>Coding</td><td>13,167</td><td>14,123</td><td>+</td><td>978</td><td>ATA</td><td>TAG</td><td></td><td>15</td></tr><tr><th>trnC(tgc)</th><td>tRNA</td><td>14,109</td><td>14,158</td><td>−</td><td>50</td><td></td><td></td><td></td><td></td></tr><tr><th>trnY(tac)</th><td>tRNA</td><td>14,159</td><td>14,205</td><td>−</td><td>47</td><td></td><td></td><td>7</td><td></td></tr></tbody></table>
Table 2 in Complete mitochondrial genome of the terrestrial isopod Cubaris murina Brandt, 1833: new family gene order and novel tRNA secondary structures
<p><b>Table 2.</b> Base composition (%) of nucleotide, AT content, and AT- and GC-skew of the mitochondrial genome of <i>Cubaris murina.</i> Values in bold indicate positive AT-skew.</p><table><tbody><tr><th></th><th></th><th></th><th>Base composition (%)</th><th></th><th></th><th></th><th></th></tr></tbody><tbody><tr><th>Total</th><td></td><td>A</td><td>C</td><td>G</td><td>T</td><td>%AT</td><td>AT skew</td><td>GC skew</td></tr><tr><th>14,212 bp</th><td>28.90%</td><td>15.80%</td><td>23.40%</td><td>31.90%</td><td>60.80%</td><td>−0.049</td><td>0.194</td></tr><tr><th></th><td></td><td></td><td>Base composition (%)</td><td></td><td></td><td></td><td></td></tr><tr><th>Gene Strand</th><td>A</td><td>C</td><td>G</td><td>T</td><td>%AT</td><td>AT skew</td><td>GC skew</td></tr><tr><th><i>cox1</i></th><td>(+)</td><td>22.4%</td><td>18.6%</td><td>24.2%</td><td>34.8%</td><td>57.2%</td><td>−0.217</td><td>0.131</td></tr><tr><th><i>cox2</i></th><td>(+)</td><td>20.6%</td><td>21.7%</td><td>27.7%</td><td>30.0%</td><td>50.6%</td><td>−0.186</td><td>0.121</td></tr><tr><th><i>atp8</i></th><td>(+)</td><td>21.1%</td><td>15.0%</td><td>34.7%</td><td>29.3%</td><td>50.4%</td><td>−0.163</td><td>0.396</td></tr><tr><th><i>atp6</i></th><td>(+)</td><td>20.4%</td><td>19.8%</td><td>29.1%</td><td>30.8%</td><td>51.2%</td><td>−0.203</td><td>0.190</td></tr><tr><th><i>cox3</i></th><td>(+)</td><td>17.2%</td><td>23.6%</td><td>28.6%</td><td>30.6%</td><td>47.8%</td><td>−0.280</td><td>0.096</td></tr><tr><th><i>nad3</i></th><td>(+)</td><td>20.2%</td><td>16.2%</td><td>32.3%</td><td>31.3%</td><td>51.5%</td><td>−0.216</td><td>0.332</td></tr><tr><th><i>nad1</i></th><td>(−)</td><td>31.7%</td><td>22.2%</td><td>27.6%</td><td>18.6%</td><td>50.3%</td><td><b>0.260</b></td><td>0.108</td></tr><tr><th><i>NCR1</i></th><td></td><td>28.9%</td><td>27.5%</td><td>19.7%</td><td>23.9%</td><td>52.8%</td><td>0.095</td><td>−0.165</td></tr><tr><th><i>NCR2</i></th><td></td><td>27.0%</td><td>22.2%</td><td>18.1%</td><td>32.7%</td><td>59.7%</td><td>−0.095</td><td>−0.102</td></tr><tr><th><i>cob</i></th><td>(−)</td><td>36.0%</td><td>12.0%</td><td>23.5%</td><td>28.5%</td><td>64.5%</td><td><b>0.116</b></td><td>0.324</td></tr><tr><th><i>nad5</i></th><td>(+)</td><td>28.5%</td><td>10.5%</td><td>21.7%</td><td>39.3%</td><td>67.8%</td><td>−0.159</td><td>0.348</td></tr><tr><th><i>nad4</i></th><td>(−)</td><td>38.4%</td><td>11.9%</td><td>22.8%</td><td>26.9%</td><td>65.3%</td><td><b>0.176</b></td><td>0.314</td></tr><tr><th><i>nad4L</i></th><td>(−)</td><td>41.9%</td><td>12.2%</td><td>17.6%</td><td>28.3%</td><td>70.2%</td><td><b>0.194</b></td><td>0.181</td></tr><tr><th><i>nad6</i></th><td>(+)</td><td>25.7%</td><td>10.5%</td><td>17.8%</td><td>46.1%</td><td>71.8%</td><td>−0.284</td><td>0.258</td></tr><tr><th><i>NCR3</i></th><td></td><td>36.8%</td><td>9.8%</td><td>19.1%</td><td>34.3%</td><td>71.1%</td><td>0.035</td><td>0.322</td></tr><tr><th><i>NCR4</i></th><td></td><td>35.5%</td><td>13.0%</td><td>15.2%</td><td>36.2%</td><td>71.7%</td><td>−0.010</td><td>0.078</td></tr><tr><th><i>nad2</i></th><td>(+)</td><td>28.9%</td><td>12.4%</td><td>22.6%</td><td>36.1%</td><td>65.0%</td><td>−0.111</td><td>0.291</td></tr></tbody></table>
Table 1 in The complete mitochondrial genome of the leopard shark Triakis semifasciata (Triakidae)
<p><b>Table 1.</b> Mitochondrial genome of <i>Triakis semifasciata</i>: arrangement and annotation.</p><table><tbody><tr><th>Name</th><th>Type</th><th>Start</th><th>Stop</th><th>Strand</th><th>Length (bp)</th><th>Start</th><th>Stop</th><th>Anticodon</th><th>Continuity</th></tr></tbody><tbody><tr><th>trnF(gaa)</th><td></td><td>1</td><td>69</td><td>(+)</td><td>69</td><td></td><td></td><td></td><td>1</td></tr><tr><th>rrnS</th><td></td><td>71</td><td>1023</td><td>(+)</td><td>953</td><td></td><td></td><td></td><td>−3</td></tr><tr><th>trnV(tac)</th><td></td><td>1021</td><td>1092</td><td>(+)</td><td>72</td><td></td><td></td><td></td><td>23</td></tr><tr><th>rrnL</th><td></td><td>1116</td><td>2763</td><td>(+)</td><td>1648</td><td></td><td></td><td></td><td>−1</td></tr><tr><th>trnL2(taa)</th><td></td><td>2763</td><td>2837</td><td>(+)</td><td>75</td><td></td><td></td><td></td><td>0</td></tr><tr><th><i>nad1</i></th><td></td><td>2838</td><td>3812</td><td>(+)</td><td>975</td><td>ATG</td><td>TAA</td><td></td><td>0</td></tr><tr><th>trnl(gat)</th><td></td><td>3813</td><td>3882</td><td>(+)</td><td>70</td><td></td><td></td><td></td><td>1</td></tr><tr><th>trnQ(ttg)</th><td></td><td>3884</td><td>3955</td><td>(-)</td><td>72</td><td></td><td></td><td></td><td>0</td></tr><tr><th>trnM(cat)</th><td></td><td>3956</td><td>4024</td><td>(+)</td><td>69</td><td></td><td></td><td></td><td>0</td></tr><tr><th><i>nad2</i></th><td></td><td>4025</td><td>5071</td><td>(+)</td><td>1047</td><td>ATG</td><td>TAG</td><td></td><td>−2</td></tr><tr><th>trnW(tca)</th><td></td><td>5070</td><td>5140</td><td>(+)</td><td>71</td><td></td><td></td><td></td><td>1</td></tr><tr><th>trnN(tgc)</th><td></td><td>5142</td><td>5210</td><td>(-)</td><td>69</td><td></td><td></td><td></td><td>0</td></tr><tr><th>trnN(gtt)</th><td></td><td>5211</td><td>5283</td><td>(-)</td><td>73</td><td></td><td></td><td></td><td>6</td></tr><tr><th>OL</th><td></td><td>5290</td><td>5319</td><td>(+)</td><td>30</td><td></td><td></td><td></td><td>1</td></tr><tr><th>trnC(gca)</th><td></td><td>5321</td><td>5389</td><td>(-)</td><td>69</td><td></td><td></td><td></td><td>1</td></tr><tr><th>trnY(gta)</th><td></td><td>5391</td><td>5460</td><td>(-)</td><td>70</td><td></td><td></td><td></td><td>1</td></tr><tr><th><i>cox1</i></th><td></td><td>5462</td><td>7018</td><td>(+)</td><td>1557</td><td>GTG</td><td>TAA</td><td></td><td>0</td></tr><tr><th>trnS2(tga)</th><td></td><td>7019</td><td>7089</td><td>(-)</td><td>71</td><td></td><td></td><td></td><td>3</td></tr><tr><th>trnD(gtc)</th><td></td><td>7093</td><td>7162</td><td>(+)</td><td>70</td><td></td><td></td><td></td><td>7</td></tr><tr><th><i>cox2</i></th><td></td><td>7170</td><td>7860</td><td>(+)</td><td>691</td><td>ATG</td><td>T(AA)</td><td></td><td>0</td></tr><tr><th>trnK(ttt)</th><td></td><td>7861</td><td>7934</td><td>(+)</td><td>74</td><td></td><td></td><td></td><td>1</td></tr><tr><th><i>atp8</i></th><td></td><td>7936</td><td>8103</td><td>(+)</td><td>168</td><td>ATG</td><td>TAA</td><td></td><td>−10</td></tr><tr><th><i>atp6</i></th><td></td><td>8094</td><td>8777</td><td>(+)</td><td>684</td><td>ATG</td><td>TAA</td><td></td><td>−1</td></tr><tr><th>cox3</th><td></td><td>8777</td><td>9562</td><td>(+)</td><td>786</td><td>ATG</td><td>TAA</td><td></td><td>2</td></tr><tr><th>trnG(tcc)</th><td></td><td>9565</td><td>9634</td><td>(+)</td><td>70</td><td></td><td></td><td></td><td>0</td></tr><tr><th><i>nad3</i></th><td></td><td>9635</td><td>9985</td><td>(+)</td><td>351</td><td>ATG</td><td>TAG</td><td></td><td>−2</td></tr><tr><th>trnR(tcg)</th><td></td><td>9984</td><td>10,053</td><td>(+)</td><td>70</td><td></td><td></td><td></td><td>0</td></tr><tr><th><i>nad4l</i></th><td></td><td>10,054</td><td>10,350</td><td>(+)</td><td>297</td><td>ATG</td><td>TAA</td><td></td><td>−7</td></tr><tr><th><i>nad4</i></th><td></td><td>10,344</td><td>11,724</td><td>(+)</td><td>1381</td><td>ATG</td><td>T(AA)</td><td></td><td>0</td></tr><tr><th>trnH(gtg)</th><td></td><td>11,725</td><td>11,793</td><td>(+)</td><td>69</td><td></td><td></td><td></td><td>0</td></tr><tr><th>trnS1(gct)</th><td></td><td>11,794</td><td>11,860</td><td>(+)</td><td>67</td><td></td><td></td><td></td><td>0</td></tr><tr><th>trnL1(tag)</th><td></td><td>11,861</td><td>11,932</td><td>(+)</td><td>72</td><td></td><td></td><td></td><td>0</td></tr><tr><th><i>nad5</i></th><td></td><td>11,933</td><td>13,762</td><td>(+)</td><td>1830</td><td>ATG</td><td>TAA</td><td></td><td>−5</td></tr><tr><th><i>nad6</i></th><td></td><td>13,758</td><td>14,279</td><td>(-)</td><td>522</td><td>ATG</td><td>AGG</td><td></td><td>0</td></tr><tr><th>trnE(ttc)</th><td></td><td>14,280</td><td>14,349</td><td>(-)</td><td>70</td><td></td><td></td><td></td><td>2</td></tr><tr><th><i>cob</i></th><td></td><td>14,352</td><td>15,497</td><td>(+)</td><td>1146</td><td>ATG</td><td>TAG</td><td></td><td>−1</td></tr><tr><th>trnT(tgt)</th><td></td><td>15,497</td><td>15,568</td><td>(+)</td><td>72</td><td></td><td></td><td></td><td>2</td></tr><tr><th>trnP(tgg)</th><td></td><td>15,571</td><td>15,639</td><td>(-)</td><td>69</td><td></td><td></td><td></td><td>278</td></tr><tr><th>CR</th><td></td><td>15,640</td><td>16,613</td><td></td><td>974</td><td></td><td></td><td></td><td></td></tr><tr><th>OH</th><td></td><td>15,918</td><td>16,612</td><td>(+)</td><td>695</td><td></td><td></td><td></td><td></td></tr></tbody></table>
Linked collectors and determiners for: Complete mitochondrial genome and taxonomic revision of Cardiodactylus muiri Otte, 2007 (Gryllidae: Eneopterinae: Lebinthini).
Natural history specimen data linked to collectors and determiners held within, "Complete mitochondrial genome and taxonomic revision of Cardiodactylus muiri Otte, 2007 (Gryllidae: Eneopterinae: Lebinthini)". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/97360f20-c368-4646-b2d0-865ae53e60da">https://bionomia.net/dataset/97360f20-c368-4646-b2d0-865ae53e60da</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/97360f20-c368-4646-b2d0-865ae53e60da">https://gbif.org/dataset/97360f20-c368-4646-b2d0-865ae53e60da</a>. Formatted as a Frictionless Data package.
Data from: The complete mitochondrial genome of Schoutedenia ralumensis Rübsaamen, 1905 (Hemiptera: Aphididae: Greenideinae)
<p>We sequenced the complete mitochondrial genome of <i>Schoutedenia ralumensis</i>. The mitogenome is 16,051 bp long with an A+T content of 84.5%, including 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes, a control region and an aphid-specific repeat region located between <i>trnE</i> and <i>trnF</i>. All protein-coding genes are initiated by ATN and terminated with TAA or TAG except for <i>cox1</i> and <i>nad5</i>. All transfer RNAs display the typical clover-leaf secondary structure except for <i>trnS (AGN)</i>. The unique repeat region is 974 bp long, in which a 305-bp repeat unit repeats 3.19 times. The phylogenetic tree supports a sister relationship of <i>S. ralumensis </i>and<i> Greenidea psidii</i>.</p>
Supporting data for the manuscript "Generation of lineage-resolved complete metagenome-assembled genomes in complex microbial communities"
<p>Supporting data for the manuscript titled "Generation of lineage-resolved complete metagenome-assembled genomes in complex microbial communities". The archive includes:</p> <ul> <li>metaFlye assmeblies and graphs for HiFi and CLR datasets.</li> <li>HiFi and CLR3 bins/MAGs produced using bin3C / DAS_Tool</li> <li>HiFi MAG taxonomy identifications and completeness info</li> <li>MAGPhase results on HiFi and CLR assmeblies </li> <li>Krona plots with sample composition analysis</li> <li>rRNA/tRNA annotations for the HiFi assembly</li> </ul>
Figure 2 in The complete mitochondrial genome of Parnassius actius (Lepidoptera: Papilionidae: Parnassinae) with the related phylogenetic analysis
Figure 2. Codon distribution in nine Parnassiinae mitogenome (Numbers to the left refer to the total number of codons; CDspT— codons per thousand codons; codon families are provided on the x axis).
The complete mitochondrial genome of Eutrichosiphum pasaniae (Okajima, 1908) (Hemiptera: Aphididae: Greenideinae)
<p><span>In this study, we sequenced the complete mitochondrial genome of<i> Eutrichosiphum pasaniae </i>through Illumina platform. The circular mitogenome is 16,500 bp in length and composed of 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNAs), 2 ribosomal RNA genes (rRNAs), a large control region and a special repeat region. The nucleotide composition of whole mitogenome is strongly AT-biased (85.5%). All PCGs start with ATN and end with TAA except for <i>cox1 </i>which terminates with an incomplete stop codon T. All tRNAs have a typical clover-leaf secondary structure except for<i> trnS (AGN)</i>. The lengths of <i>rrnL</i>, <i>rrnS</i> and control region are 1276, 774 and 996 bp, respectively. The repeat region with a length of 909 bp is located between <i>trnE</i> and <i>trnF</i> and consists of 4.1 repeat units. The phylogenetic tree supports the sister relationship of <i>Eutrichosiphum pasaniae </i>and <i>Greenidea psidii</i>.</span></p>
Supplementary material 4 from: Zhang R, Tang Q, Deng L (2021) The complete mitochondrial genome of Microphysogobio elongatus (Teleostei, Cyprinidae) and its phylogenetic implications. ZooKeys 1061: 57-73. https://doi.org/10.3897/zookeys.1061.70176
Table S4. PartitionFinder results
Supplementary material 2 from: Zhang R, Tang Q, Deng L (2021) The complete mitochondrial genome of Microphysogobio elongatus (Teleostei, Cyprinidae) and its phylogenetic implications. ZooKeys 1061: 57-73. https://doi.org/10.3897/zookeys.1061.70176
Table S2. List of species used to construct the phylogenetic tree in the present study
Supplementary material 8 from: Zhang R, Tang Q, Deng L (2021) The complete mitochondrial genome of Microphysogobio elongatus (Teleostei, Cyprinidae) and its phylogenetic implications. ZooKeys 1061: 57-73. https://doi.org/10.3897/zookeys.1061.70176
Figure S4. Control region of the M. elongatus mitochondrial genome
Supplementary material 5 from: Zhang R, Tang Q, Deng L (2021) The complete mitochondrial genome of Microphysogobio elongatus (Teleostei, Cyprinidae) and its phylogenetic implications. ZooKeys 1061: 57-73. https://doi.org/10.3897/zookeys.1061.70176
Figure S1. Relative synonymous codon usage (RSCU) in the M. elongatus mitogenome
Supplementary material 6 from: Zhang R, Tang Q, Deng L (2021) The complete mitochondrial genome of Microphysogobio elongatus (Teleostei, Cyprinidae) and its phylogenetic implications. ZooKeys 1061: 57-73. https://doi.org/10.3897/zookeys.1061.70176
Figure S2. Codon distribution in the M. elongatus mitogenome
Supplementary material 1 from: Zhang R, Tang Q, Deng L (2021) The complete mitochondrial genome of Microphysogobio elongatus (Teleostei, Cyprinidae) and its phylogenetic implications. ZooKeys 1061: 57-73. https://doi.org/10.3897/zookeys.1061.70176
Table S1. Primers used for PCR
Figure 2 from: Zhang R, Tang Q, Deng L (2021) The complete mitochondrial genome of Microphysogobio elongatus (Teleostei, Cyprinidae) and its phylogenetic implications. ZooKeys 1061: 57-73. https://doi.org/10.3897/zookeys.1061.70176
Figure 2 Phylogenetic relationships of Gobioninae based on complete mitochondrial genomes using maximum likelihood (ML) analyses. ML bootstrap values are shown at the nodes.
Supplementary material 3 from: Zhang R, Tang Q, Deng L (2021) The complete mitochondrial genome of Microphysogobio elongatus (Teleostei, Cyprinidae) and its phylogenetic implications. ZooKeys 1061: 57-73. https://doi.org/10.3897/zookeys.1061.70176
Table S3. Codon usage in the PCGs of the Microphysogobio elongatus mitogenome
Figure 5 from: Wang P, Yang H, Zhou W, Hwang C, Zhang W, Qian Z (2014) The mitochondrial genome of the land snail Camaena cicatricosa (Müller, 1774) (Stylommatophora, Camaenidae): the first complete sequence in the family Camaenidae. ZooKeys 451: 33-48. https://doi.org/10.3897/zookeys.451.8537
Figure 5 - Phylogenetic tree inferred by maximum likelihood (ML) and maximum parsimony (MP) methods based on 13 protein genes. The tree is rooted with Aplysia californica. Numbers on or under the nodes represent bootstrap values of MP and ML respectively.
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