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Figure 5 in Inferring phylogenetic relationships in the common vole (Microtus arvalis) based on mitochondrial and nuclear sequence diversities

Figure 5. Bayesian tree obtained from COXI sequences based on HKY + I parameter (Hasegawa et al., 1985). Numbers on branches show posterior probability (pb) values above 50%.

Figure 4 in Inferring phylogenetic relationships in the common vole (Microtus arvalis) based on mitochondrial and nuclear sequence diversities

Figure 4. Median-joining network obtained from COXI haplotypes of Anatolian, Asian and European populations of M. arvalis. Number of mutations are shown by black lines on the branches.

Figure S3 in Inferring phylogenetic relationships in the common vole (Microtus arvalis) based on mitochondrial and nuclear sequence diversities

Figure S3. ABGD results of IRBP gene region. The histogram shows distribution of genetic distances among M. arvalis samples; yellow columns show mean intralineage distances and red columns show interlineage distances. The diagram implies the lineages according to initial partitions = Group 1 (n: 28): Anatolia, Serbia, Hungary, Iberian Peninsula; Group 2 (n: 1): one sample from Anatolia.

Figure 3 in Inferring phylogenetic relationships in the common vole (Microtus arvalis) based on mitochondrial and nuclear sequence diversities

Figure 3. Bayesian tree obtained from CYTB sequences based on HKY+I+G parameter (Hasegawa et al., 1985). Numbers on branches show posterior probability (pb) values above 50%.

Figure 1. Figure 1 in Inferring phylogenetic relationships in the common vole (Microtus arvalis) based on mitochondrial and nuclear sequence diversities

Figure 1. Figure 1. Location map of AUMAC samples and GenBank Sequences (modified from Yiğit et al. 20161). Black line is the border of arvalis and obscurus forms; dotted lines show possible hybridization zone of the two forms. Western Europe (1: Orkney Island, 2: Spain, 3: France, 4: Belgium), Central Europe (5: Germany, 6: Switzerland, 7: Czech Republic), Eastern Europe (8: Austria, 9: Slovenia, 10: Bosnia, 11: Montenegro, 12: Serbia, 13: Hungary, 14: Poland, 15: Ukraine, 16: European Russia/Vladimir, 17: European Russia/ Arkhangelsk Oblast) groups are 'arvalis' form. Anatolia and its surroundings (18: Anatolia/Ardahan, Kars and Erzurum provinces, 19: Iran, 20: Armenia) and Asia (21: Russia/Orenburg Oblast, 22: Russia/ Chelyabinsk Oblast, 23: China/Xinjiang, 24: Siberia) belong to 'obscurus' form.

Figure 4. A neighbour-net phylogenetic network constructed using 106 in Evolutionary relationships among several species from the genus Cricotopus (Diptera: Chironomidae): What about Turkish representatives of this genus?

Figure 4. A neighbour-net phylogenetic network constructed using 106 COI sequences of the genus Cricotopus and two COI sequences Orthocladius sp. (outgroup). For the clarity of the network, bootstrap support values of the nodes are not demonstrated.

opencc-by-4.0Aug 2020View details →

Fig. 1. Phylogenetic relationships between the E in Molecular characterization and novel genotypes of Enterocytozoon bieneusi in pet snakes in Beijing, China

Fig. 1. Phylogenetic relationships between the E. bieneusi genotypes identified in this study and other reported genotypes. The relationships were inferred using maximum likelihood analysis of the ITS rRNA gene and the values generated greater than 70% are shown beside the nodes. Genotypes with filled circles and triangles are known and novel genotypes identified in this study, respectively.

Fig. 3 in The gastrointestinal nematodes of plains and Grevy's zebras: Phylogenetic relationships and host specificity

Fig. 3. Crossocephalus viviparus extracted from fresh zebra faeces were often infected with an apparent fungus. Hyphae emerging from the head (left, right) and from the tail (centre) of infected worms and stained with lactophenol blue (right). (For interpretation of the references to colour in this figure legend, the reader is referred to the Web version of this article.)

Fig. 2 in The gastrointestinal nematodes of plains and Grevy's zebras: Phylogenetic relationships and host specificity

Fig. 2. Nematode prevalence in plains vs. Grevy's zebras in (a) a bipartite graph, where edge widths indicate prevalence in each zebra species, and (b) a linear regression, shown in black with shading representing standard error and the one-to-one line indicated by the dashed red line. Only sequences comprising>1% of total reads were used and they were clustered into mOTUs by 98% similarity. Taxon labels followed by a letter signify species-level matches (>98% similarity) to reference worms identified only to genus (see SI2), while those followed by a number represent sequences that matched a reference only to the genus level (>95% similarity). Black boxes/points are taxa without a match of>95% to any identified sequences. (For interpretation of the references to colour in this figure legend, the reader is referred to the Web version of this article.)

Fig. 1 in The gastrointestinal nematodes of plains and Grevy's zebras: Phylogenetic relationships and host specificity

Fig. 1. Phylogeny of all sequenced Strongylidae with species-level taxon assignments from GenBank and the present study, coloured by genus (the same colour code is used across all figures in this paper). Branch tips were pruned such that only one tip was kept of all immediate sister taxa with identical taxon assignments, and the number of samples merged in each tip is indicated in parentheses. Bootstrap percentages over 50% are displayed in bold to highlight nodes with high support. Branch lengths represent the number of base substitutions per site, estimated with the Tamura 3-parameter model assuming gamma-distributed substitution rate variation.

Fig. 5. Phylogenetic tree depicting inferred genetic relationships among Leucocytozoon mitochondrial DNA cytochrome b in Negligible evidence for detrimental effects of Leucocytozoon infections among Emperor Geese (Anser canagicus) breeding on the Yukon-Kuskokwim Delta, Alaska

Fig. 5. Phylogenetic tree depicting inferred genetic relationships among Leucocytozoon mitochondrial DNA cytochrome b haplotypes identified from blood samples collected from Emperor Geese inhabiting the Yukon-Kuskokwim Delta, Alaska during 2006–2016 and those previously reported for closely related haemosporidian morphospecies on the National Center for Biotechnology Information GenBank and Malavi databases (accession IDs in parentheses). Bars to the right of tree represent the assignment of sequences to L. simondi clade A (teal), L. simondi clade B (orange), or other Leucocytozoon. (For interpretation of the references to colour in this figure legend, the reader is referred to the Web version of this article.)

Fig. 4. Phylogenetic tree depicting inferred genetic relationships among Haemoproteus mitochondrial DNA cytochrome b in Negligible evidence for detrimental effects of Leucocytozoon infections among Emperor Geese (Anser canagicus) breeding on the Yukon-Kuskokwim Delta, Alaska

Fig. 4. Phylogenetic tree depicting inferred genetic relationships among Haemoproteus mitochondrial DNA cytochrome b haplotypes identified from blood samples collected from Emperor Geese inhabiting the Yukon-Kuskokwim Delta, Alaska during 2006–2016 and those previously reported for closely related haemosporidian morphospecies on the National Center for Biotechnology Information GenBank and Malavi databases (accession IDs in parentheses).

opencc-by-4.0Apr 2021View details →

Fig. 1. Phylogenetic relationships between 74 in Prevalence and molecular characterization of novel species of the Diplomonad genus Octomitus (Diplomonadida: Giardiinae) from wildlife in a New York watershed

Fig. 1. Phylogenetic relationships between 74 sequences of Octomitus representing 14 genotypes estimated by maximum likelihood analysis. The GTR + I + G model (gamma shape = 0.338, prop. invariable sites = 0.619) was chosen by jModelTest2 to be the best-fitting evolutionary model. Branches with less than 70% bootstrap support were not considered statistically robust and were collapsed during manual editing of the visualization. Inset: ML phylogeny computed from Octomitus genotypes aligned with the homologous region of available Diplomonad 18S rDNA sequences from Giardia, Spironucleus, Hexamita, Trimitus, and Enteromonas.

opencc-by-4.0Oct 2018View details →

Fig. 1 in Phylogenetic relationships and time-calibration of the South American fossil and extant species of southern beeches (Nothofagus)

Fig. 1. Strict consensus tree from Implied Weight Analysis (IWA) (k = 8). Dashed cladogram branches indicate fossil taxa. Consistency Index (CI): 0.51; Retention Index (RI): 0.78. Shaded circles (a–c) indicate the three possible placements of the two taxa Nothofagus alpina and Nothofagus elongata before pruning as indicated by IterPCR. Green/brown and black leaves are representatives of living and fossil species, respectively. Abbreviations: NCA, New Caledonia; NGU, New Guinea; NZE, New Zealand; SAU, Southern Australia; SSA, Southern South America; TAS, Tasmania.

opencc-by-4.0Dec 2008View details →

Fig. 1 in A novel supermatrix approach improves resolution of phylogenetic relationships in a comprehensive sample of danthonioid grasses

Fig. 1. Geologic map of Florissant Fossil Beds National Monument in central Colorado, USA, modified from Evanoff et al. (2001: fig. 1). Areal extent of the Monument is outlined by thick gray line.

opencc-by-4.0Dec 2008View details →

Fig. 2 in A novel supermatrix approach improves resolution of phylogenetic relationships in a comprehensive sample of danthonioid grasses

Fig. 2. Talpid mammal Oreotalpa florissantensis gen. et sp. nov., FLFO 5813 (holotype), right dentary with m1–m3 from UCM locality 92179, Florissant Formation, Florissant Fossil Beds National Monument, Colorado, USA; latest Eocene (Chadronian). SEM micrographs; in lingual (A), labial (B), and occlusal (C) views, and explanatory drawing of occlusal view (D). Anterior is to the right. Original drawing by Leigh Anne McConnaughey. For B, C, and D, anterior is to the right.

Fig. 5 in A new genus of Late Ordovician-Early Silurian pentameride brachiopods and its phylogenetic relationships

Fig. 5. Transverse serial sections of two paratype specimens of Parastrophina portentosa (Nikitin and Popov in Nikitin et al. 1996), Upper Ordovician, Dulankara Regional Stage, sample F−1014, Sortan−Manai, northern Betpak−Dala desert, Central Kazakhstan. A. NMW 98.28G.383, juvenile specimen. B. NMW 98.28G.377. Numbers indicate distances from apex.

Fig. 3 in A new genus of Late Ordovician-Early Silurian pentameride brachiopods and its phylogenetic relationships

Fig. 3. Sketches of selected serial sections of Protanastrophia repanda gen. et sp. nov. ROM 57738, paratype, Attawapiskat Formation, locality AK2c, Akimiski Island, Nunavut, Canada. Numbers denote distance from apex.

Fig. 6 in A new genus of Late Ordovician-Early Silurian pentameride brachiopods and its phylogenetic relationships

Fig. 6. Stratigraphic ranges and inferred phylogenetic relationships of 19 parastrophinid species and other selected syntrophiidine species based on one of six equally parsimonious cladograms (A) and emended topography of the Parastrophina cluster shown in strict consensus tree (B). Numbered nodes are supported by the character states listed in Appendix 3.

Fig. 2 in A new genus of Late Ordovician-Early Silurian pentameride brachiopods and its phylogenetic relationships

Fig. 2. Shell measurements of Protanastrophia repanda gen. et sp. nov. Sample AK2c, Attawapiskat Formation, Akimiski Island, Hudson Bay region, Nunavut, Canada.