Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
22,710
datasets available to search
ShareScore release 0.9.0
Dataset results
22,710 results for “Plants for planting”
Microsatellite data of Vincetoxicum hirundinaria offspring and their inferred mother plants from 13 populations in the South-Western Finnish Archipelago
<p>Fragmented landscapes may have implications for the genetic structure of populations and for the microevolution of plant species. In particular, landscape fragmentation and/or population isolation might affect the evolution of plant mating systems. Here, we study the consequences of landscape fragmentation on the genetic structure of populations of a perennial herb, <i>Vincetoxicum hirundinaria </i>with a mixed mating system. Our study area, the south-western Finnish archipelago, was formed after the glacial ice sheet started to retreat 12 000 years ago. Due to the isostatic land uplift following the glacial retreat, suitable habitats have been formed gradually, and as a consequence, populations of <i>V. hirundinaria</i> differ in age, size and their degree of isolation in the area. We hypothesized that a mixed-mating system has been selected for in these populations due to the advantage of self-fertilization in newly colonized areas and the advantage of outcrossing in adaptation to heterogeneous environments. To test this hypothesis, we collected seeds of open-pollinated flowers from 13 <i>V. hirundinaria</i> populations differing in size, age and isolation, and used 15 microsatellite markers to perform progeny-array analysis to estimate population-level outcrossing rates, population genetic indices and population structure. We found that <i>V. hirundinaria</i> is almost completely outcrossing in the study area with no signs of past self-fertilization and/or mating among relatives. The overall low inbreeding coefficients indicate that even in small populations mating among relatives is rare. High allelic richness of both maternal and offspring genotypes as well as limited genetic differentiation among the studied populations indicate strong gene flow among them. Our findings suggest that <i>V. hirundinaria</i> has successful seed and pollen dispersal among populations that has allowed colonization of new habitats in this fragmented landscape and led to a genetically well-mixed group of populations at the scale of the study.</p>
Data from: Biomass responses of widely and less-widely naturalized alien plants to artificial light at night
<p>Artificial light at night has rapidly increased during the last century, and could potentially affect many ecological processes, from individuals via communities to entire ecosystems. Recent research has shown that artificial light at night may not only affect the behavior of animals but also growth of plants and vegetation composition. However, it is not known yet whether artificial light at night may also affect other global change components such as plant invasions. </p> <p>Here, we tested how naturalized alien plants respond to artificial light at night, and particularly whether widely naturalized species differ from less-widely naturalized species in their response to artificial light at night. We grew nine taxonomically related pairs of widely naturalized and less-widely naturalized species alone and in competition, with native plants with and without artificial light at night.</p> <p>We found that in the competition treatment, artificial light at night significantly increased the total biomass production per pot, but not the biomass ratio between the naturalized alien plants and the native competitors. Interestingly, although the less-widely naturalized species produced overall significantly less biomass than the widely naturalized species, there was a trend that the less-widely naturalized species increased their biomass more strongly in response to artificial light at night than the widely naturalized species did (<i>P</i> = 0.07).<b> </b></p> <p>Synthesis. Our study shows that although widely naturalized plants produce more biomass than less-widely naturalized plants across different environmental conditions, they took less advantage of artificial light at night. This suggests that artificial light at night might lead to increased spread of currently less-widely naturalized species, at least when artificial light at night continues to increase.</p>
Data from: Tropical deforestation reduces plant mating quality by shifting the functional composition of pollinator communities
<p>Deforestation can impact the quality of pollen received by target plants (<i>i.e., </i>delivery of incompatible pollen, self-pollen, or pollen from closely related individuals). Such reductions in plant mating quality may be direct, when deforestation reduces plant population size and the availability of pollen donors, or indirect, when decreased mating quality results, for example, from shifts in the composition of the pollinator community. As most flowering plants depend on animal pollinators for reproduction, there is a need to understand the direct and indirect links between deforestation, pollinator community composition, and plant mating quality.</p> <p>We quantified the direct, pollen-donor-mediated and indirect, pollinator-mediated effects of deforestation on mating quality in <i>Heliconia tortuosa</i>, a tropical herb pollinated by low- and high-mobility hummingbirds. We used a confirmatory path analysis to test the hypothesis that deforestation (amount of forest cover and forest patch size) influenced mating quality (haplotype diversity of pollen pools, outcrossing, and biparental inbreeding) directly and indirectly through functional shifts in the composition of pollinator communities (proportion of high-mobility hummingbirds).</p> <p>We found that deforestation triggered functional shifts in the composition of pollinator communities, as the proportion of high-mobility hummingbirds increased significantly with the amount of forest cover and forest patch size. The composition of the pollinator community affected mating quality, as the haplotype diversity of pollen pools increased significantly with the proportion of high-mobility hummingbirds, while biparental inbreeding decreased significantly. Although we did not detect any significant direct, pollen-donor-mediated effects of deforestation on mating quality, reductions in the amount of forest cover and forest patch size resulted in functional shifts that filtered out high-mobility hummingbirds from the pollinator community, thereby reducing mating quality indirectly.</p> <p><i>Synthesis. </i>Deforestation primarily influenced plant mating quality through a cascading effect mediated by functional shifts in the composition of the pollinator community. Our results indicate that plant mating quality strongly depends on the composition of local pollinator communities. Functional shifts that filter out highly mobile and effective pollinators may reduce the transfer of genetically diverse pollen loads from unrelated plants. Such shifts may have pronounced effects on plant population dynamics and disrupt genetic connectivity.</p>
Data from: Soil heterogeneity increases plant diversity after twenty years of manipulation during grassland restoration
The 'environmental heterogeneity hypothesis' predicts that variability in resources promotes species coexistence, but few experiments support this hypothesis in plant communities. A previous 15-y test of this hypothesis in a prairie restoration experiment demonstrated a weak effect of manipulated soil resource heterogeneity on plant diversity. This response was attributed to a transient increase in richness following a post-restoration supplemental propagule addition, occasionally higher diversity under nutrient enrichment, and reduced cover of a dominant species in a subset of soil treatments. Here, we report community dynamics under continuous propagule addition in the same experiment, corresponding to 16-20 y of restoration, in response to altered availability and heterogeneity of soil resources. We also quantified traits of newly added species to determine if heterogeneity increases the amount and variety of niches available for new species to exploit. The heterogeneous treatment contained a factorial combination of altered nutrient availability and soil depth; control plots had no manipulations. Total diversity and richness were higher in the heterogeneous treatment during this 5 y study due to higher cover, diversity, and richness of previously established forbs, particularly in the N-enriched subplots. All new species added to the experiment exhibited unique trait spaces, but there was no evidence that heterogeneous plots contained a greater variety of new species representing a wider range of trait spaces relative to the control treatment. The richness and cover of new species was higher in N-enriched soil, but the magnitude of this response was small. Communities assembling under long-term N addition were dominated by different species among subplots receiving added N, leading to greater dispersion of communities among the heterogeneous relative to control plots. Contrary to the deterministic mechanism by which heterogeneity was expected to increase diversity (greater variability in resources for new species to exploit), higher diversity in the heterogeneous plots resulted from destabilization of formerly grass-dominated communities in N-enriched subplots. While we do not advocate increasing available soil N at large scales, we conclude that the positive effect of environmental heterogeneity on diversity can take decades to materialize and depend on development of stochastic processes in communities with strong establishment limitation.
Data from: Herbivory and eutrophication mediate grassland plant nutrient responses across a global climatic gradient
Plant stoichiometry, the relative concentration of elements, is a key regulator of ecosystem functioning and is also being altered by human activities. In this paper we sought to understand the global drivers of plant stoichiometry and compare the relative contribution of climatic vs. anthropogenic effects. We addressed this goal by measuring plant elemental (C, N, P and K) responses to eutrophication and vertebrate herbivore exclusion at eighteen sites on six continents. Across sites, climate and atmospheric N deposition emerged as strong predictors of plot‐level tissue nutrients, mediated by biomass and plant chemistry. Within sites, fertilization increased total plant nutrient pools, but results were contingent on soil fertility and the proportion of grass biomass relative to other functional types. Total plant nutrient pools diverged strongly in response to herbivore exclusion when fertilized; responses were largest in ungrazed plots at low rainfall, whereas herbivore grazing dampened the plant community nutrient responses to fertilization. Our study highlights (1) the importance of climate in determining plant nutrient concentrations mediated through effects on plant biomass, (2) that eutrophication affects grassland nutrient pools via both soil and atmospheric pathways and (3) that interactions among soils, herbivores and eutrophication drive plant nutrient responses at small scales, especially at water‐limited sites.
Data from: Living in the city: urban environments shape the evolution of a native annual plant
Urban environments are warmer, have higher levels of atmospheric CO2, and altered patterns of disturbance and precipitation than nearby rural areas. These differences can be important for plant growth and are likely to create distinct selective environments. We planted a common garden experiment with seeds collected from natural populations of the native annual plant Lepidium virginicum, growing in five urban and nearby rural areas in the northern United States to determine whether and how urban populations differ from those from surrounding rural areas. When grown in a common environment, plants grown from seeds collected from urban areas bolted sooner, grew larger, had fewer leaves, had an extended time between bolting and flowering, and produced more seeds than plants grown from seeds collected from rural areas. Interestingly, the rural populations exhibited larger phenotypic differences from one another than urban populations. Surprisingly, genomic data revealed that the majority of individuals in each of the urban populations were more closely related to individuals from other urban populations than they were to geographically proximate rural areas – the one exception being urban and rural populations from New York which were nearly identical. Taken together our results suggest that selection in urban environments favors different traits than selection in rural environments and that these differences can drive adaptation and shape population structure.
Data from: Facilitated exploitation of pollination mutualisms: fitness consequences for plants
Mutualisms are only rarely one-to-one interactions: each species generally interacts with multiple mutualists. Exploitation is ubiquitous in mutualisms, and we would therefore expect that each mutualist interacts with multiple exploiters as well. Exploiter species may also interact with one another. For example, the action of one exploiter species might open the opportunity for exploitation by a second species. Exploitation is common in many plant–pollinator mutualisms: 'primary' nectar robbers feed through holes they make in flowers, which can be subsequently used by 'secondary' nectar robbers unable to create holes themselves. The overall effect of nectar robbing on plant fitness is often (although not always) negative. No study has separated the effects of interacting with primary vs. secondary robbers. Here, we examine the effects of primary vs. secondary nectar robbing on pollinator visitation rate and female fitness in Ipomopsis aggregata. Manipulating the type of nectar robbing that flowers experienced, we found that secondary nectar robbing inflicted fitness costs to plants beyond that inflicted by primary robbing alone. Secondary nectar robbing significantly reduced pollen receipt to flowers, as well as fruit and seed production. Although the causes are elusive, the effect may be attributed to changes in pollinator behaviour at these plants. Synthesis. Our findings provide evidence that interacting with multiple exploiters can lead to increased negative effects for mutualists, and highlight the importance of incorporating multiple exploiters into the conceptual framework of mutualism.
Data from: Plant community response to switchgrass (Panicum virgatum) population source in establishing prairies
Ecological restoration and revegetation efforts entail the translocation of native plant populations. Risks associated with these efforts include failure of translocated populations to establish or, conversely, such strong establishment that they excessively dominate the recipient community. The role that selective breeding plays in mediating these risks is unclear but of increasing importance as efforts to restore and establish multifunctional grasslands also increase. In a three-year, spatially replicated study, we seeded experimental prairie communities with either domesticated (cultivar) or undomesticated strains of Panicum virgatum (switchgrass), a North American C4 species under development as a biomass crop. We evaluated the composition, performance, and diversity of the recipient plant communities and compared the performance of cultivar and undomesticated switchgrass in those communities. We found little evidence that switchgrass population source affected community response. Switchgrass cultivars modestly exceeded undomesticated strains with respect to stand establishment, third-year stand density, and aboveground biomass; effect size and significance differed among sites. Our results suggest that including cultivars in ecological restorations and multifunctional grasslands may enhance success of switchgrass establishment with little risk of impairing the composition or diversity of plant communities for up to three years, as reflected in the measures used here. However, the incorporation of undomesticated switchgrass into multifunctional grasslands may enhance landscape-scale genetic variation and mitigate risks associated with gene flow between translocated and local wild switchgrass populations; more research on these dynamics is needed.
Data from: High specialization and limited structural change in plant‐herbivore networks along a successional chronosequence in tropical montane forest
Secondary succession is well‐understood, to the point of being predictable for plant communities, but the successional changes in plant‐herbivore interactions remains poorly explored. This is particularly true for tropical forests, despite the increasing importance of early successional stages in tropical landscapes. Deriving expectations from successional theory, we examine properties of plant‐herbivore interaction networks while accounting for host phylogenetic structure along a succession chronosequence in montane rainforest in Papua New Guinea. We present one of the most comprehensive successional investigations of interaction networks, equating to >40 person years of field sampling, and one of the few focused on montane tropical forests. We use a series of nine 0.2ha forest plots across young secondary, mature secondary and primary montane forest, sampled almost completely for woody plants and larval leaf chewers (Lepidoptera), using forest felling. These networks comprised of 12,357 plant‐herbivore interactions and were analysed using quantitative network metrics, a phylogenetically controlled host‐use index and a qualitative network beta diversity measure. Network structural changes were low and specialisation metrics surprisingly similar throughout succession, despite high network beta diversity. Herbivore abundance was greatest in the earliest stages, and hosts here had more species‐rich herbivore assemblages, presumably reflecting higher palatability due to lower defensive investment. All herbivore communities were highly specialised, using a phylogenetically narrow set of hosts, while host phylogenetic diversity itself decreased throughout the chronosequence. Relatively high phylogenetic diversity, and thus high diversity of plant defenses, in early succession forest may result in herbivores feeding on fewer hosts than expected. Successional theory, derived primarily from temperate systems, is limited in predicting tropical host‐herbivore interactions. All succession stages harbour diverse and unique interaction networks, which together with largely similar network structures and consistent host use patterns, suggests general rules of assembly may apply to these systems.
Data from: Induced phenological avoidance: a neglected defense mechanism against seed predation in plants
<p>1. Flowering phenology is an important life history trait affecting plant reproductive performance and is influenced by various abiotic and biotic factors. Pre-dispersal seed predation and pollination are expected to impose counteracting selection pressure on flowering phenology, with pre-dispersal seed predation expected to favor off-peak flowering and pollination to favor synchronous flowering. <br> 2. Here we studied the effect of pre-dispersal seed predation by the beetle Byturus ochraceus, a specialist seed herbivore, on the flowering phenology of Geum urbanum. This forest understorey plant species is self-pollinating, so that the influence of seed predation can be studied independent from pollination. We measured in detail the timing and predation rate of individual flowers during two consecutive years in more than 60 individuals. We tested the hypotheses that pre-dispersal seed predation exerts selection for within-season compensatory flowering as well as for induced phenological avoidance in the following season.<br> 3. We found no indication for compensatory flowering within a growing season, but plants that experienced predation shifted their flowers to the end of the flowering season the subsequent year. This induced phenological avoidance points to a plastic response to pre-dispersal seed predation that may be adaptive. Importantly, the delay in flower production came at a cost, since flowers later in the season had a reduced seed output, presumably because of increasing light limitation following forest canopy closure. <br> 4. Synthesis: Herbivory by specialist enemies can cause serious fitness decline in hosts. We here show that induced shifts in phenology can form an important defense strategy against pre-dispersal seed predation. The induced mismatches between herbivore and host phenology are anticipated to be adaptive when herbivory is predictable across successive flowering periods.</p>
Configurational crop heterogeneity increases within-field plant diversity
<p>1. Increasing landscape heterogeneity by restoring semi-natural elements to reverse farmland biodiversity declines is not always economically feasible or acceptable to farmers due to competition for land. We hypothesized that increasing the heterogeneity of the crop mosaic itself, hereafter referred to as crop heterogeneity, can have beneficial effects on within-field plant diversity.</p> <p>2. Using a unique multi-country dataset from a cross-continent collaborative project covering 1451 agricultural fields within 432 landscapes in Europe and Canada, we assessed the relative effects of compositional and configurational crop heterogeneity on within-field plant diversity components. We also examined how these relationships were modulated by the position within the field.</p> <p>3. We found strong positive effects of configurational crop heterogeneity on within-field plant alpha and gamma diversity in field interiors. These effects were as high as the effect of semi-natural cover. In field borders, effects of crop heterogeneity were limited to alpha diversity. We suggest that a heterogeneous crop mosaic may overcome the high negative impact of management practices on plant diversity in field interiors, whereas in field borders, where plant diversity is already high, landscape effects are more limited.</p> <p>4. <em>Synthesis and applications</em>. Our study shows that increasing configurational crop heterogeneity is beneficial to within-field plant diversity. It opens up a new effective and complementary way to promote farmland biodiversity without taking land out of agricultural production. We therefore recommend adopting manipulation of crop heterogeneity as a specific, effective management option in future policy measures, perhaps adding to agri-environment schemes, to contribute to the conservation of farmland plant diversity.</p>
Data from: Endemism in Wyoming plant and insect herbivore communities during the early Eocene hothouse
The warm, equable, and ice-free early Eocene Epoch permits investigation of ecosystem function and macro-ecological patterns during a very different climate regime than exists today. It also provides insight into what the future may entail, as anthropogenic CO2 release drives Earth towards a comparable hothouse condition. Studying plant-insect herbivore food webs during hothouse intervals is warranted because these account for the majority of non-microbial terrestrial biodiversity. Here, we report new plant and insect herbivore damage census data from two floodplain sites in the Wind River Basin of central Wyoming, one in the Aycross Formation (50-48.25 Ma) at the basin edge (WRE) and the second in the Wind River Formation in the interior of the basin (WRI). The WRI site is in stratigraphic proximity to a volcanic ash that is newly dated to 52.416 ± 0.016/0.028/0.063 (2σ). We compare the Wind River Basin assemblages to published data from a 52.65 Ma floodplain flora in the neighboring Bighorn Basin (BH) and find that only 5.6% of plant taxa occur at all three sites and approximately 10% occur in both basins. The dissimilar floras support distinct suites of insect herbivores, as recorded by leaf damage. The relatively low diversity BH flora has the highest diversity of insect damage, contrary to hypotheses that insect herbivore diversity tracks floral diversity. The distinctiveness of the WRE flora is likely due to its younger age and cooler reconstructed paleotemperature, but these factors are nearly identical for the WRI and BH floras. Site-specific microenvironmental factors that cannot be measured easily in deep time may account for these differences. Alternatively, the Owl Creek Mountains between the two basins may have provided a formidable barrier to the thermophilic organisms that inhabited the basin interiors, supporting Janzen's hypothesis that mountain passes appear higher in tropical environments.
Data from: Economy of scale: third partner strengthens a keystone ant-plant mutualism
While foundation species can stabilize ecosystems at landscape scales, their ability to persist is often underlain by keystone interactions occurring at smaller scales. Acacia drepanolobium is a foundation tree, comprising >95% of woody cover in East African black-cotton savanna ecosystems. Its dominance is underlain by a keystone mutualistic interaction with several symbiotic ant species in which it provides housing (swollen thorns) and carbohydrate-rich nectar from extra-floral nectaries (EFN). In return, it gains protection from catastrophic damage from mega-herbivores. Crematogaster mimosae is the ecologically dominant symbiotic ant in this system, also providing the highest protection services. In addition to tending EFN, C. mimosae tend scale insects for carbohydrate-rich honeydew. We investigated the role of scale insects in this specialized ant-plant interaction. Specifically, does this putatively redundant third partner strengthen the ant-plant mutualism by making the ant a better protector of the tree? Or does it weaken the mutualism by being costly to the tree while providing no additional benefit to the ant-plant mutualism? We coupled observational surveys with two scale-manipulation experiments and found evidence that this third partner strengthens the ant-plant mutualism. Trees with scale insects experimentally removed experienced a 2.5X increase in elephant damage compared to trees with scale insects present over 10 months. Reduced protection was driven by scale removal causing a decrease in ant colony size and per capita baseline activity and defensive behavior. We also found that ants increased scale-tending and the density of scale insects on trees when EFN were experimentally reduced. Thus, in this system, scale insects and EFN are likely complementary, rather than redundant, resources with scale insects benefitting ants when EFN production is low (such as during annual dry periods in this semi-arid ecosystem). This study reveals that a third-partner strengthens an ant-plant mutualism that serves to stabilize a whole ecosystem.
Data from: Population genomics and demographic sampling of the ant-plant Vachellia drepanolobium and its symbiotic ants from sites across its range in East Africa.
The association between the African ant plant, Vachellia drepanolobium, and the ants that inhabit it has provided insight into the boundaries between mutualism and parasitism, the response of symbioses to environmental perturbations, and the ecology of species coexistence. We use a landscape genomics approach at sites sampled throughout the range of this system in Kenya to investigate the demographics and genetic structure of the different partners in the association. We find that different species of ant associates of V. drepanolobium show striking differences in their spatial distribution throughout Kenya, and these differences are only partly correlated with abiotic factors. A comparison of the population structure of the host plant and its three obligately arboreal ant symbionts, Crematogaster mimosae, Crematogaster nigriceps, and Tetraponera penzigi, shows that the ants exhibit somewhat similar patterns of structure throughout each of their respective ranges, but that this does not correlate in any clear way with the respective genetic structure of the populations of their host plants. A lack of evidence for local coadaptation in this system suggests that all partners have evolved to cope with a wide variety of biotic and abiotic conditions.
Changes in multiple environmental factors additively enhance the dominance of an exotic plant with a novel trade-off pattern
<p>1. Whether global changes impact native and exotic species differently is unclear, because the changes may favour both native and exotic species over competitors. Previous studies have mainly focused on the separate effects of the different environmental changes, but plant communities are influenced by changes in multiple environmental factors, and it is still unclear whether native and exotic species respond similarly to the combined effects of these factors.</p> <p>2. We hypothesized that differences in interspecific trade-offs between native and exotic species could lead to the dominance of exotic species when the species are simultaneously subjected to multiple environmental changes.</p> <p>3. Using coastal saltmarsh plant communities as the study system, we experimentally manipulated flooding and nutrient enrichment, examined the interspecific trade-offs between competitiveness and stress tolerance for two native and one exotic species, and explored the combined effect of the two environmental changes on both native–native and native–exotic species interactions.</p> <p>4. We found that flooding and nutrient enrichment oppositely affected native–native species interactions but additively affected native–exotic species interactions. The two factors together resulted in no net change in the relative advantages between the two native species but enhanced the dominance of the exotic species over the native species. This disparity occurred because the exotic species was not subject to the interspecific trade-off between competitiveness and stress tolerance that constrained the native species.</p> <p>5. <i><b>Synthesis</b></i>. Our results suggest that changes in multiple environmental factors favour exotic species because of evolutionary novel trade-off patterns. Mechanisms underlying species coexistence in the invaded community such as interspecific trade-offs should be considered when researchers attempt to predict the effects of global changes on biological invasions.</p>
Data from: Population variation, environmental gradients, and the evolutionary ecology of plant defense against herbivory
A central tenet of plant defense theory is that adaptation to the abiotic environment sets the template for defense strategies, imposing a tradeoff between plant growth and defense. Yet, this tradeoff, commonly found among species occupying divergent resource environments, may not occur across populations of single species. We hypothesized that more favorable climates and higher levels of herbivory would lead to increases in growth and defense across plant populations. We evaluated whether plant growth and defense traits co-varied across 18 populations of showy milkweed (Asclepias speciosa) inhabiting an east-west climate gradient, spanning 25° of longitude. A suite of traits impacting defense (e.g., latex, cardenolides), growth (e.g., size), or both (e.g., SLA, trichomes) were measured in natural populations and in a common garden, allowing us to evaluate plastic and genetically based variation in these traits. In natural populations, herbivore pressure increased towards warmer sites with longer growing seasons. Growth and defense traits showed strong clinal patterns and were positively correlated. In a common garden, clines with climatic origin were only recapitulated for defense traits. Correlations between growth and defense traits were also weaker and more negative in the common garden compared to the natural populations. Thus, our data suggest that climatically favorable sites likely facilitate the evolution of greater defense at minimal costs to growth, likely because of increased resource acquisition.
Plant carbohydrate-active enzymes in bamboo (Neosinocalamus affinis): identification, classification and function in lignocellulose biosynthesis in herbivore defence
<p><i><span>Neosinocalamus affinis</span></i>, a type of cluster bamboo,<i> </i>is a good candidate feedstock for biomass energy. In the study, we found a total of 686 genes were identified as belonging to CAZyme families in the <i><span>N. affinis</span></i> transcriptome, including 222 glycoside hydrolases (GHs), 288 glycosyltransferases (GTs), 64 carbohydrate esterases (CEs), 70 auxiliary activities (AAs), 37 carbohydrate binding modules (CBMs) and five polysaccharide lyases (PLs). Expression profiles revealed that several CAZyme genes were up-regulated after insect infestation, particularly the GT, GH, AA and CE family members. Lignocellulose assays showed that the contents of three components, cellulose, hemicellulose and lignin, increased after insect infestation. Our findings showed that CAZyme genes were abundant in the <i><span>N. affinis</span></i> transcriptome and were involved in the response to herbivory. These findings could be applied to protect bamboo against herbivores, such as the bamboo snout beetle <i><span>Cyrtotrachelus buqueti</span></i>, and develop low-cost chemical feedstock from bamboo.</p>
Data from: Time-lagged effects of weather on plant demography: drought and Astragalus scaphoides
Temperature and precipitation determine the conditions where plant species can occur. Despite their significance, to date, surprisingly few demographic field studies have considered the effects of abiotic drivers. This is problematic because anticipating the effect of global climate change on plant population viability requires understanding how weather variables affect population dynamics. One possible reason for omitting the effect of weather variables in demographic studies is the difficulty in detecting tight associations between vital rates and environmental drivers. In this paper, we applied Functional Linear Models (FLMs) to long-term demographic data of the perennial wildflower, Astragalus scaphoides, and explored sensitivity of the results to reduced amounts of data. We compared models of the effect of average temperature, total precipitation, or an integrated measure of drought intensity (Standardized Precipitation Evapotranspiration Index, SPEI), on plant vital rates. We found that transitions to flowering and recruitment in year t were highest if winter/spring of year t was wet (positive effect of SPEI). Counterintuitively, if the preceding spring of year t-1 was wet, flowering probabilities were decreased (negative effect of SPEI). Survival of vegetative plants from t-1 to t was also negatively affected by wet weather in the spring of year t-1, and for large plants, even wet weather in the spring of t-2 had a negative effect. We assessed the integrated effect of all vital rates on life history performance by fitting FLMs to the asymptotic growth rate, log(λt). Log(λt) was highest if dry conditions in year t-1 were followed by wet conditions in the year t. Overall, the positive effects of wet years exceeded their negative effects, suggesting that increasing frequency of drought conditions would reduce population viability of A. scaphoides. The drought signal weakened when reducing the number of monitoring years. Substituting space for time did not recover the weather signal, probably because the weather variables varied little between sites. We detected the SPEI signal when the analysis included data from two sites monitored over 20 years (2x20 observations), but not when analyzing data from four sites monitored over 10 years (4x10 observations).
Data from: Ecosystem nitrogen retention is regulated by plant community trait interactions with nutrient status in an alpine meadow
1.Biotic nitrogen (N) retention is an important ecosystem function in the context of ongoing land use intensification, N deposition and global warming. However, a paucity of experimental evidence limits understanding of how different plant community components influence N retention in terrestrial ecosystems. 2.In this investigation we conducted a 15N labelling experiment to test how plant community properties, including plant species richness/diversity, dominance and functional traits, influence plant N uptake and retention under different nutrient availabilities. A three-year experiment examined the effects of adding N (10 g N m−2 year−1) and phosphorus (P) (5 g P m−2 year−1) to an alpine meadow on the Qinghai-Tibetan Plateau. 3.Results show that 15N retention increased with the addition of N and P; the addition of P produced the largest increase of 15N retention in plant and soil N pools. Changes in soil nutrient conditions also facilitated different plant community controls on ecosystem N retention. Ecosystem 15N retention was influenced by species richness and root biomass in the control plots; whereas the N addition treatment showed an important effect of community-weighted means (CWM) of specific leaf area (SLA), and plots with additional P recorded lower CWM of root nitrogen content (root N) and larger CWM root:shoot ratios (R/S) as important determinants. 4.Synthesis. Ecosystem N retention was influenced by conservative and exploitative plant species and/or their traits under N deficient and abundant conditions, respectively, whereas species richness and community plant biomass were most influential under control conditions. The discovery of an interaction between plant community traits and nutrient biogeochemistry as a mechanism for ecosystem N retention offers a means to predict how vegetation in alpine meadow ecosystems will respond to expected global change.
Experimental shifts in exotic flowering phenology produce strong indirect effects on native plant reproductive success
<ol> <li>By causing phenological shifts that vary among species, climate change is altering time envelopes for species interactions, often with unexpected demographic consequences. Indirect interactions, like apparent competition and apparent facilitation, are especially likely to change in duration because they involve multiple interactors, increasing the likelihood of asynchronous phenological shifts by at least one interactor. Thus, we might observe ecological surprises if intermediaries of indirectly interacting species change their mediating behavior.</li> <li>We explored this possibility in a plant-pollinator community that is likely to experience asynchronous phenological shifts. We advanced and delayed the flowering phenology of two ubiquitous exotic plants of western Washington prairies, <i>Hypochaeris radicata</i> and <i>Cytisus scoparius,</i> relative to seven native perennial forb species whose phenologies remained unmanipulated. These species interact indirectly through shared pollinators, whose foraging behavior influences plant reproductive success. We quantified impacts of experimental phenological shifts on seedset, pollinator visitation rates, and visiting pollinator composition relative to an unmanipulated control. We first verified that unmanipulated indirect interactions between native and exotic plants were strong, ranging from facilitative to competitive.</li> <li>Seedset of native plants was strongly affected by changes in exotic flowering phenology, but the magnitude and direction of effects were not predicted by the nature of the original indirect interaction (facilitative vs. neutral vs. competitive) or the change in interaction duration. The relationship between pollinator visitation and seedset changed for most species, though changes in pollinator visitation rate and pollinator composition were not as widespread as effects on native seedset.</li> <li> <b>Synthesis. </b>Changes in pollinator foraging behavior in response to changes in available floral resources are probably responsible for the unexpected effects we observed. Asynchronous phenological shifts have the potential to produce large and unexpected effects on reproductive success via indirect interactions.</li> </ol>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.