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FIGURE 18 in Taxonomy of European Damaeidae (Acari, Oribatida) XI. European species of the genus Piribelba Miko 2021: redescriptions of P. rossica (Bulanova-Zachvatkina 1957) and P. piriformis (Mihelčič, 1964) using morphology and DNA sequence data
FIGURE 18. Piribelba rossica (Bulanova-Zachvatkina, 1957), larva and nymphs from Kemerovo region: A—larva, subcapitulum, ventral view; B—larva, palp, left, antiaxial view; C—larva, chelicera, right, antiaxial view; D—protonymph, subcapitulum, ventral view; E—protonymph, palp, left, antiaxial view; F—protonymph, chelicera, right, antiaxial view; G— deutonymph, subcapitulum, ventral view; H—deutonymph, palp, left, antiaxial view; I—deutonymph, chelicera, right, antiaxial view; J—tritonymph, subcapitulum, ventral view; K—tritonymph, palp, left, antiaxial view; L—tritonymph, chelicera, right, antiaxial view. Scale bars 100 μm.
FIGURE 4 in Taxonomy of European Damaeidae (Acari, Oribatida) XI. European species of the genus Piribelba Miko 2021: redescriptions of P. rossica (Bulanova-Zachvatkina 1957) and P. piriformis (Mihelčič, 1964) using morphology and DNA sequence data
FIGURE 4. Piribelba rossica (Bulanova-Zachvatkina, 1957), adult from Khabarovsk Krai, SEM micrograph: A, B—dorsolateral view; C—anterodorsal view; D—posterodorsal view. Scale bar 200 μm.
FIGURE 7 in Taxonomy of European Damaeidae (Acari, Oribatida) XI. European species of the genus Piribelba Miko 2021: redescriptions of P. rossica (Bulanova-Zachvatkina 1957) and P. piriformis (Mihelčič, 1964) using morphology and DNA sequence data
FIGURE 7. Piribelba rossica (Bulanova-Zachvatkina, 1957), adult from Khabarovsk Krai, light microscope images: A—leg I (part), right, antiaxial view; B—leg II (part), right, antiaxial view (seta d on genu broken); C—leg III (part), left, antiaxial view; D, E—leg IV (part), left, antiaxial view.
FIGURE 6 in Taxonomy of European Damaeidae (Acari, Oribatida) XI. European species of the genus Piribelba Miko 2021: redescriptions of P. rossica (Bulanova-Zachvatkina 1957) and P. piriformis (Mihelčič, 1964) using morphology and DNA sequence data
FIGURE 6. Piribelba rossica (Bulanova-Zachvatkina, 1957), adult from Khabarovsk Krai, light microscope images: A—dorsal view; B—ventral view; C—lateral view; D—rostral and lamellar setae, dorsal view; E—exobothridial seta, lateral view; F— cerotegument of prodorsal region; G—prodorsum, part, dorsal view; anterior part of notogaster, dorsal view.
FIGURE 1 in Taxonomy of European Damaeidae (Acari, Oribatida) XI. European species of the genus Piribelba Miko 2021: redescriptions of P. rossica (Bulanova-Zachvatkina 1957) and P. piriformis (Mihelčič, 1964) using morphology and DNA sequence data
FIGURE 1. Piribelba rossica (Bulanova-Zachvatkina, 1957), adult from Kemerovo region: A—dorsal view (legs only partly drawn); B—ventral view (gnathosoma not shown, legs only partly drawn), C—lateral view (gnathosoma and legs not shown); D—right genital plate; E—left genital plates; F—left anal plate. Scale bar 100 μm.
FIGURE 17 in Taxonomy of European Damaeidae (Acari, Oribatida) XI. European species of the genus Piribelba Miko 2021: redescriptions of P. rossica (Bulanova-Zachvatkina 1957) and P. piriformis (Mihelčič, 1964) using morphology and DNA sequence data
FIGURE 17. Piribelba rossica (Bulanova-Zachvatkina, 1957), tritonymph from Kemerovo region: A—trochanter, femur and genu I, right, antiaxial view; B—tibia and tarsus I, right, antiaxial view; C—leg II, left, antiaxial view; D—leg III, left, antiaxial view; E—leg IV, right, antiaxial view. Scale bar 100 μm.
FIGURE 25 in Taxonomy of European Damaeidae (Acari, Oribatida) XI. European species of the genus Piribelba Miko 2021: redescriptions of P. rossica (Bulanova-Zachvatkina 1957) and P. piriformis (Mihelčič, 1964) using morphology and DNA sequence data
FIGURE 25. Piribelba piriformis (Mihelčič, 1964), deutonymph from Mihelčič collection. A—lateral view of the body; B— detail of legs IV and posterior part of the body; C—leg I; D—detail of dorsal seta and solenidion of tibia IV; E—detail of seta ftʺ of tarsus IV. Scale bars 100 μm (B), 50 μm (C).
FIGURE 27 in Taxonomy of European Damaeidae (Acari, Oribatida) XI. European species of the genus Piribelba Miko 2021: redescriptions of P. rossica (Bulanova-Zachvatkina 1957) and P. piriformis (Mihelčič, 1964) using morphology and DNA sequence data
FIGURE 27. Piribelba piriformis (Mihelčič, 1964), legs. A—leg I of specimen from Austria (Virgental); B—part of leg I, specimen from Slovakia (Sivec), form "lanceata"; C—leg IV of specimen from Slovakia (Dreveník); D—part of leg IV, specimen from Slovakia (Sivec), form "lanceata"; E—trochanter with additional seta and femur of leg III, specimen from Austria (Dörfertal); F—palp of specimen from Slovakia (Sivec). Scale bars 100 μm (A–E), 25 μm (F).
FIGURE 10 in Taxonomy of European Damaeidae (Acari, Oribatida) XI. European species of the genus Piribelba Miko 2021: redescriptions of P. rossica (Bulanova-Zachvatkina 1957) and P. piriformis (Mihelčič, 1964) using morphology and DNA sequence data
FIGURE 10. Piribelba rossica (Bulanova-Zachvatkina, 1957), larva from Kemerovo region: A —dorsal view (legs only partly drawn); B—ventral view (gnathosoma not shown, legs only partly drawn), C—lateral view (gnathosoma and legs only partly drawn). Scale bar 100 μm.
FIGURE 20 in Taxonomy of European Damaeidae (Acari, Oribatida) XI. European species of the genus Piribelba Miko 2021: redescriptions of P. rossica (Bulanova-Zachvatkina 1957) and P. piriformis (Mihelčič, 1964) using morphology and DNA sequence data
FIGURE 20. Piribelba piriformis (Mihelčič, 1964), collection of Mihelčič. A–E (left side) —original slides with labels of author; A1–D5—adult specimens observed in slides, with measured total length, single specimen in slide B designated as lectotype (B1), only juvenile instar (deutonymph) placed near specimen D4 on slide D.
FIGURE 5 in Taxonomy of European Damaeidae (Acari, Oribatida) XI. European species of the genus Piribelba Miko 2021: redescriptions of P. rossica (Bulanova-Zachvatkina 1957) and P. piriformis (Mihelčič, 1964) using morphology and DNA sequence data
FIGURE 5. Piribelba rossica (Bulanova-Zachvatkina, 1957), adult from Khabarovsk Krai, SEM micrograph: A—ventral view; B—lateral view; C—gnathosoma, lateral view; D, E—cerotegument of notogaster; F—cerotegument of prodorsal region; G—femur, genua and tibia III, antiaxial view. Scale bars 200 μm (A, B), 50 μm (G), 20 μm (C, D), 5 μm (F), 2 μm (E).
FIGURE 24 in Taxonomy of European Damaeidae (Acari, Oribatida) XI. European species of the genus Piribelba Miko 2021: redescriptions of P. rossica (Bulanova-Zachvatkina 1957) and P. piriformis (Mihelčič, 1964) using morphology and DNA sequence data
FIGURE 24. Piribelba piriformis (Mihelčič, 1964), paralectotypes (syntypes of the author, specimens marked according to Fig 20). A—ventral side, anogenital area (specimen A1); B—leg IV and part of notogastral setae (C1); C—leg I (C1); D—seta le (C1); E—parts of leg I and II and distal part of bothridial seta (A1); F—leg IV (D2); G—detail of setae and cerotegument on proximal part of leg IV (D3); H—reticular cerotegument of notogaster (C1). Scale bars 200 μm (F), 50 μm (A–E, G, H).
FIGURE 21 in Taxonomy of European Damaeidae (Acari, Oribatida) XI. European species of the genus Piribelba Miko 2021: redescriptions of P. rossica (Bulanova-Zachvatkina 1957) and P. piriformis (Mihelčič, 1964) using morphology and DNA sequence data
FIGURE 21. Piribelba piriformis (Mihelčič, 1964), lectotype. A—lateral view of the body (total length 678 µm); B—view of notogaster from adverse side; C—detail of prodorsal setae le, ro and ex; D—detail of selected setae of the body (C and D scale is increased).
FIGURE 23 in Taxonomy of European Damaeidae (Acari, Oribatida) XI. European species of the genus Piribelba Miko 2021: redescriptions of P. rossica (Bulanova-Zachvatkina 1957) and P. piriformis (Mihelčič, 1964) using morphology and DNA sequence data
FIGURE 23. Piribelba piriformis (Mihelčič, 1964), lectotype. A—lateral view with indication of areas depicted in detail; B—detail of sejugal area; C—ventral side, detail of epimeres; D—ventral side, anogenital area; E—detail of lamellar and rostral seta; F—parts of legs II-III-IV. Scale bars 200 μm (A), 100 μm (C, D), 50 μm (E), 20 μm (B).
FIGURE 2 in Taxonomy of European Damaeidae (Acari, Oribatida) XI. European species of the genus Piribelba Miko 2021: redescriptions of P. rossica (Bulanova-Zachvatkina 1957) and P. piriformis (Mihelčič, 1964) using morphology and DNA sequence data
FIGURE 2. Piribelba rossica (Bulanova-Zachvatkina, 1957), adult from Kemerovo region: A, B—part of epimeral III-IV region, left (genital area painted over); С—bothridial setae; D—chelicera, left, antiaxial view; E—subcapitulum, ventral view; F—palp, left, antiaxial view; G—prodorsal setae; H—notogastral setae. Scale bar 100 μm.
FIGURE 3 in Taxonomy of European Damaeidae (Acari, Oribatida) XI. European species of the genus Piribelba Miko 2021: redescriptions of P. rossica (Bulanova-Zachvatkina 1957) and P. piriformis (Mihelčič, 1964) using morphology and DNA sequence data
FIGURE 3. Piribelba rossica (Bulanova-Zachvatkina, 1957), adult from Kemerovo region: A—leg I, left, antiaxial view; B—leg II, left, antiaxial view; C—trochanter III, left, antiaxial view; D—femur, genu, tibia and tarsus III, left, antiaxial view; E—trochanter IV, left, antiaxial view; F—femur, genu, tibia and tarsus IV, left, antiaxial view. Scale bar 100 μm.
Aligned and curated mtDNA sequences from: Ancient DNA reveals interstadials as a driver of common vole population dynamics during the last glacial period
<p><strong><span>Aim: </span></strong><span>Many species experienced population turnover and local extinction during the Late Pleistocene. In the case of megafauna, it remains challenging to disentangle climate change and the activities of Palaeolithic hunter-gatherers as the main cause. In contrast, the impact of humans on rodent populations </span><span>is likely to be negligible. This study investigated which climatic and/or environmental factors affect the population dynamics of the common vole. </span><span>This temperate rodent is widespread across Europe and was one of the most abundant small mammal species throughout the Late Pleistocene.</span></p> <p><span><strong>Location:</strong> </span><span>Europe</span></p> <p><strong><span>Taxon: </span></strong><span>Common vole (<em>Microtus arvalis</em>)</span></p> <p><strong><span>Methods: </span></strong><span>We generated a dataset comprised of a 4.2-kb-long fragment of mitochondrial DNA (mtDNA) from 148 ancient and 51 modern specimens sampled from multiple localities across Europe and covering the last 60 thousand years (ka). We used Bayesian inference to reconstruct their phylogenetic relationships and to estimate the age of the specimens that were not directly dated.</span></p> <p><span><strong>Results:</strong> </span><span>We estimated the time to the most recent common ancestor of all last glacial and extant common vole lineages to be 90 ka ago and the divergence of the main mtDNA lineages present in extant populations to between 55 and 40 ka ago, which is earlier than previous estimates. </span><span>We detected several lineage turnovers in Europe during the period of high climate variability at the end of Marine Isotope Stage 3 (MIS 3; 57–29 ka ago) in addition to those found previously around the Pleistocene/Holocene transition.</span><span> </span><span>In contrast, data from the Western Carpathians suggest continuity throughout the Last Glacial Maximum (LGM), even at high latitudes.</span></p> <p><strong><span>Main conclusions: </span></strong><span>The main factor affecting the common vole populations during the last glacial period was the decrease in open habitat during the interstadials, whereas </span><span>climate </span><span>deterioration </span><span>during</span><span> the LGM had little impact on population dynamics. This suggests that the rapid environmental change rather than other factors was the major force shaping the histories of the Late Pleistocene faunas.</span></p>
CRAG: De novo characterization of cell-free DNA fragmentation hotspots in plasma whole-genome sequencing
<p><strong>Supplementary dataset for the manuscript:</strong></p> <p><strong>CRAG: De novo characterization of cell-free DNA fragmentation hotspots in plasma whole-genome sequencing</strong></p> <p> Xionghui Zhou1,*, Haizi Zheng1,*, Hailu Fu1,*, Kelsey L. Dillehay McKillip2-3, Susan M. Pinney2,4, Yaping Liu1-2,5-7 #</p> <p>Affiliations:</p> <p>1 Division of Human Genetics, Cincinnati Children’s Hospital Medical Center, Cincinnati, OH 45229</p> <p>2 University of Cincinnati Cancer Center, Cincinnati, OH 45229</p> <p>3 Department of Pathology & Laboratory Medicine, University of Cincinnati College of Medicine, Cincinnati, OH 45229</p> <p>4 Department of Environmental and Public Health Sciences, University of Cincinnati College of Medicine, Cincinnati, OH 45229</p> <p>5 Division of Biomedical Informatics, Cincinnati Children’s Hospital Medical Center, Cincinnati, OH 45229</p> <p>6 Department of Pediatrics, University of Cincinnati College of Medicine, Cincinnati, OH 45229</p> <p>7 Department of Electrical Engineering and Computing Sciences, University of Cincinnati College of Engineering and Applied Science, Cincinnati, OH 45229</p> <p>* These authors contributed equally</p> <p># Email: lyping1986@gmail.com</p>
Supplementary material 1 from: Conrado AC, Arruda H, Stanton DWG, James SW, Kille P, Brown G, Silva E, Dupont L, Taheri S, Morgan AJ, Simões N, Rodrigues A, Montiel R, Cunha L (2017) The complete mitochondrial DNA sequence of the pantropical earthworm Pontoscolex corethrurus (Rhinodrilidae, Clitellata): Mitogenome characterization and phylogenetic positioning. ZooKeys 688: 1-13. https://doi.org/10.3897/zookeys.688.13721
Inferred secondary structure of 22 tRNA genes in the mitochondrial DNA of the pantropical earthworm Pontoscolex corethrurus (Rhinodrilidae, Clitellata). :
Supplementary material 1 from: Lefort M, Wratten S, Cusumano A, Varennes Y, Boyer S (2017) Disentangling higher trophic level interactions in the cabbage aphid food web using high-throughput DNA sequencing. Metabarcoding and Metagenomics 1: e13709. https://doi.org/10.3897/mbmg.1.13709
OSR aphid mummy collection. Sampling location and size / Amplification success of mummies' DNA extracts by Illumina sequencing.
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