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1,254 results for “PANs”
Soil temperatures, lake temperature, lake depth, and evaporation pan depth and pan water temperature data from Toolik Field Station, Toolik Lake, Alaska for 1994.
Weather data file for Arctic Tundra LTER site at Toolik Lake. Only the sensors that are measured every 10 minutes and averaged every three hours are include, i.e. soil temperatures, lake temperature, lake depth, and evaporation pan depth and pan water temperature.
Soil temperatures, lake temperature, lake depth, and evaporation pan depth and pan water temperature data from Toolik Field Station, Toolik Lake, Alaska for 1995.
Weather data file for Arctic Tundra LTER site at Toolik Lake. Only the sensors that are measured every 10 minutes and averaged every three hours are include, i.e. soil temperatures, lake temperature, lake depth, and evaporation pan depth and pan water temperature.
Soil temperatures, lake temperature, lake depth, and evaporation pan depth and pan water temperature data from Toolik Field Station, Toolik Lake, Alaska for 1996.
Weather data file for Arctic Tundra LTER site at Toolik Lake. Only the sensors that are measured every 10 minutes and averaged every three hours are include, i.e. soil temperatures, lake temperature, lake depth, and evaporation pan depth and pan water temperature.
Soil temperatures, lake temperature, lake depth, and evaporation pan depth and pan water temperature data from Toolik Field Station, Toolik Lake, Alaska for 1997.
Weather data file for Arctic Tundra LTER site at Toolik Lake. Only the sensors that are measured every 10 minutes and averaged every three hours are include, i.e. soil temperatures, lake temperature, lake depth, and evaporation pan depth and pan water temperature.
Soil temperatures, lake temperature, lake depth, and evaporation pan depth and pan water temperature data from Toolik Field Station, Toolik Lake, Alaska for 1998.
Weather data file for Arctic Tundra LTER site at Toolik Lake. Only sensors measured every 10 minutes and averaged every three hours are include in this file, i.e. soil temperatures, lake temperature, lake depth, and evaporation pan depth and pan water temperature.
Soil temperatures, lake temperature, lake depth, and evaporation pan depth and pan water temperature data from Toolik Field Station, Toolik Lake, Alaska for 1999.
Weather data file for Arctic Tundra LTER site at Toolik Lake. Only the sensors that are measured every 10 minutes and averaged every three hours are include, i.e. soil temperatures, lake temperature, lake depth, and evaporation pan depth and pan water temperature.
Soil temperatures, lake temperature, lake depth, and evaporation pan depth and pan water temperature data from Toolik Field Station, Toolik Lake, Alaska for 2006.
Weather data file for Arctic Tundra LTER site at Toolik Lake. Only the sensors that are measured every 10 minutes and averaged every three hours are include, i.e. soil temperatures, lake temperature, lake depth, and evaporation pan depth and pan water temperature.
Soil temperatures, lake temperature, lake depth, and evaporation pan depth and pan water temperature data from Toolik Field Station, Toolik Lake, Alaska for 2005.
Weather data file for Arctic Tundra LTER site at Toolik Lake. Only the sensors that are measured every 10 minutes and averaged every three hours are include, i.e. soil temperatures, lake temperature, lake depth, and evaporation pan depth and pan water temperature.
Model code and output of CSIBv4 pan-Arctic sea ice-ocean DMS simulation
<p>here i deposit the model source code and output of the manuscript "Spatio-temporal variability in modelled bottom-ice and sea-surface dimethylsulfide concentrations and fluxes in the Arctic during 1979-2015" by Hayashida et al. (2020).</p> <p><strong>See "readme.txt" for information.</strong></p> <p>For question, contact Hakase Hayashida.</p>
Data from: Healthy cardiovascular biomarkers across the lifespan in wild-born chimpanzees (Pan troglodytes)
<p>Chimpanzees (<em>Pan troglodytes</em>) are a crucial model for understanding the evolution of human health and longevity. Cardiovascular disease is a major source of mortality during ageing in humans and therefore a key issue for comparative research. Current data indicate that compared to humans, chimpanzees have proatherogenic blood lipid profiles, an important risk factor for cardiovascular disease in humans. However, most work to date on chimpanzee lipids come from laboratory-living populations where lifestyles diverge from a wild context. Here, we examined cardiovascular profiles in chimpanzees living in African sanctuaries, who semi-free-range in large forested enclosures, consume a naturalistic diet, and generally experience conditions more similar to a wild chimpanzee lifestyle. We measured blood lipids, body weight and body fat in 75 sanctuary chimpanzees and compared them to publicly available data from laboratory-living chimpanzees from the Primate Ageing Database. We found that semi-free-ranging chimpanzees exhibited lower body weight and lower levels of lipids that are risk factors for human cardiovascular disease, and that some of these disparities increased with age. Our findings support the hypothesis that lifestyle can shape health indices in chimpanzees, similar to effects observed across human populations, and contribute to an emerging understanding of human cardiovascular health in evolutionary context.</p>
Pan-cancer Aberrant Pathway Activity Analysis (PAPAA)
<p>Information about the dataset files:</p> <p>1) pancan_rnaseq_freeze.tsv.gz: Publicly available gene expression data for the TCGA Pan-cancer dataset. File: PanCanAtlas EBPlusPlusAdjustPANCAN_IlluminaHiSeq_RNASeqV2.geneExp.tsv was processed using script process_sample_freeze.py by Gregory Way et al as described in https://github.com/greenelab/pancancer/ data processing and initialization steps. [http://api.gdc.cancer.gov/data/3586c0da-64d0-4b74-a449-5ff4d9136611] [<a href="https://doi.org/10.1016/j.celrep.2018.03.046">https://doi.org/10.1016/j.celrep.2018.03.046</a>]</p> <p>2) pancan_mutation_freeze.tsv.gz: Publicly available Mutational information for TCGA Pan-cancer dataset. File: mc3.v0.2.8.PUBLIC.maf.gz was processed using script process_sample_freeze.py by Gregory Way et al as described in https://github.com/greenelab/pancancer/ data processing and initialization steps. [http://api.gdc.cancer.gov/data/1c8cfe5f-e52d-41ba-94da-f15ea1337efc] [https://doi.org/10.1016/j.celrep.2018.03.046] </p> <p>3) pancan_GISTIC_threshold.tsv.gz: Publicly available Gene- level copy number information of the TCGA Pan-cancer dataset. This file is processed using script process_copynumber.py by Gregory Way et al as described in https://github.com/greenelab/pancancer/ data processing and initialization steps. The files copy_number_loss_status.tsv.gz and copy_number_gain_status.tsv.gz generated from this data are used as inputs in our Galaxy pipeline. [https://xenabrowser.net/datapages/?cohort=TCGA%20Pan-Cancer%20(PANCAN)&removeHub=https%3A%2F%2Fxena.treehouse.gi.ucsc.edu%3A443] [<a href="https://doi.org/10.1016/j.celrep.2018.03.046">https://doi.org/10.1016/j.celrep.2018.03.046</a>]</p> <p>4) mutation_burden_freeze.tsv.gz: Publicly available Mutational information for TCGA Pan-cancer dataset mc3.v0.2.8.PUBLIC.maf.gz was processed using script process_sample_freeze.py by Gregory Way et al as described in https://github.com/greenelab/pancancer/ data processing and initialization steps. [https://github.com/greenelab/pancancer/][http://api.gdc.cancer.gov/data/1c8cfe5f-e52d-41ba-94da-f15ea1337efc] [https://doi.org/10.1016/j.celrep.2018.03.046]</p> <p>5) sample_freeze.tsv or sample_freeze_version4_modify.tsv: The file lists the frozen samples as determined by TCGA PanCancer Atlas consortium along with raw RNAseq and mutation data. These were previously determined and included for all downstream analysis All other datasets were processed and subset according to the frozen samples.[https://github.com/greenelab/pancancer/]</p> <p>6) cosmic_cancer_classification.tsv: Compendium of OG and TSG used for the analysis. Added additional genes from the cosmic database to volgelstein_cancer_classification.tsv [https://github.com/greenelab/pancancer/]</p> <p>7) CCLE_DepMap_18Q1_maf_20180207.txt.gz Publicly available Mutational data for CCLE cell lines from Broad Institute Cancer Cell Line Encyclopedia (CCLE) / DepMap Portal. [https://depmap.org/portal/download/api/download/external?file_name=ccle%2FCCLE_DepMap_18Q1_maf_20180207.txt]</p> <p>8) ccle_rnaseq_genes_rpkm_20180929_mod.tsv.gz: Publicly available Expression data for 1019 cell lines (RPKM) from Broad Institute Cancer Cell Line Encyclopedia (CCLE) / DepMap Portal. [https://depmap.org/portal/download/api/download/external?file_name=ccle%2Fccle_2019%2FCCLE_RNAseq_genes_rpkm_20180929.gct.gz]</p> <p>9) CCLE_MUT_CNA_AMP_DEL_binary_Revealer.tsv: Publicly available merged Mutational and copy number alterations that include gene amplifications and deletions for the CCLE cell lines. This data is represented in the binary format and provided by the Broad Institute Cancer Cell Line Encyclopedia (CCLE) / DepMap Portal. [https://data.broadinstitute.org/ccle_legacy_data/binary_calls_for_copy_number_and_mutation_data/CCLE_MUT_CNA_AMP_DEL_binary_Revealer.gct]</p> <p>10) GDSC_cell_lines_EXP_CCLE_names.tsv.gz Publicly available RMA normalized expression data for Genomics of Drug Sensitivity in Cancer(GDSC) cell-lines. File gdsc_cell_line_RMA_proc_basalExp.csv was downloaded. This data was subsetted to 389 cell lines that are common among CCLE and GDSC. All the GDSC cell line names were replaced with CCLE cell line names for further processing. [https://www.cancerrxgene.org/gdsc1000/GDSC1000_WebResources//Data/preprocessed/Cell_line_RMA_proc_basalExp.txt.zip]</p> <p>11) GDSC_CCLE_common_mut_cnv_binary.tsv.gz: A subset of merged Mutational and copy number alterations that include gene amplifications and deletions for common cell lines between GDSC and CCLE. This file is generated using CCLE_MUT_CNA_AMP_DEL_binary_Revealer.tsv and a list of common cell lines. </p> <p>12) gdsc1_ccle_pharm_fitted_dose_data.txt.gz: Pharmacological data for GDSC1 cell lines. [ftp://ftp.sanger.ac.uk/pub/project/cancerrxgene/releases/current_release/GDSC1_fitted_dose_response_15Oct19.xlsx]</p> <p>13) gdsc2_ccle_pharm_fitted_dose_data.txt.gz: Pharmacological data for GDSC2 cell lines. [ftp://ftp.sanger.ac.uk/pub/project/cancerrxgene/releases/current_release/GDSC2_fitted_dose_response_15Oct19.xlsx]</p> <p>14) compounds_of_interest.txt: list of pharmacological compounds tested for our analysis, taken from ftp://ftp.sanger.ac.uk/pub4/cancerrxgene/releases/release-8.1/screened_compounds_rel_8.1.csv. </p> <p>15) tcga_dictonary.tsv: list of cancer types used in the analysis. </p> <p>16) seg_based_scores.tsv: Measurement of total copy number burden, Percent of genome altered by copy number alterations. This file was used as part of the Pancancer analysis by Gregory Way et al as described in https://github.com/greenelab/pancancer/ data processing and initialization steps. [https://github.com/greenelab/pancancer/]</p> <p>17) GSE69822_pi3k_sign.txt: File with values assigned for tumor [1] or normal [-1] in given external samples (GSE69822)</p> <p>18) vlog_trans.csv: Variant stabilized log-transformed expression values in given external samples (GSE69822)</p> <p>19) path_rtk_ras_pi3k_genes.txt: File with the list of ERK/RAS/PI3K pathway genes used in the analysis. </p> <p>20) path_myc_genes.txt: File with the list of Myc pathway genes used in the analysis. (Sanchez-Vega, Francisco et al.)</p> <p>21) path_ras_genes.txt: File with the list of RAS pathway genes used in the analysis. (Sanchez-Vega, Francisco et al.)</p> <p>22) path_cell_cycle_genes.txt: File with the list of cell cycle pathway genes used in the analysis. (Sanchez-Vega, Francisco et al.)</p> <p>23) path_wnt_genes.txt: File with the list of WNT pathway genes used in the analysis. (Sanchez-Vega, Francisco et al.)</p> <p>24) GSE94937_rpkm_kras.csv: Expression values in given external samples (GSE94937)</p> <p>25) GSE94937_kras_sign.txt: File with values assigned for KRAS Mutant [1] or WT [-1] in given external samples (GSE94937)</p>
Data from: Group-level variation in co-feeding tolerance between two sanctuary-housed communities of chimpanzees (Pan troglodytes)
<p><span><span><span><span><span><span><span><span><span><span><span>Social tolerance in group-living animals can be viewed as a counterweight against competitive interests necessary to obtain coexistence equilibrium and maintain group cohesion. As such, it forms an interesting phenomenon to study at the group-level, but how can this be done most informatively? Here, we use three group-level co-feeding assays and social network analysis to study social tolerance in two groups of chimpanzees living under similar circumstances within a sanctuary to <i>i</i>) reassess whether social tolerance may be a group-specific parameter in chimpanzees and derive inferences about its long-term stability, and <i>ii</i>) compare the characteristics and resultant patterns between two established and one new assay. We show that the three assays expose the same (predicted) group-level differences in social tolerance as in the previous study eight years ago, thereby providing preliminary evidence for stability in group-specific levels of social tolerance in chimpanzees, despite changing group compositions. Furthermore, from an experimental point of view, we identify the new assay as more valid than the two established ones based on the consideration that resources may deplete at different rates across groups, which would consequently alter the need for tolerance differentially. We discuss implications for the study of social tolerance and highlight the importance of taking into account intraspecific variation in social animals.</span></span></span></span></span></span></span></span></span></span></span></p>
Data from: Pan-African phylogeography of a model organism, the African clawed frog "Xenopus laevis"
The African clawed frog Xenopus laevis has a large native distribution over much of sub-Saharan Africa and is a model organism for research, a proposed disease vector, and an invasive species. Despite its prominent role in research and abundance in nature, surprisingly little is known about the phylogeography and evolutionary history of this group. Here we report an analysis of molecular variation of this clade based on 17 loci (one mitochondrial, 16 nuclear) in up to 159 individuals sampled throughout its native distribution. Phylogenetic relationships among mitochondrial DNA haplotypes were incongruent with those among alleles of the putatively female-specific sex-determining gene DM-W, in contrast to the expectation of strict matrilineal inheritance of both loci. Population structure and evolutionarily diverged lineages were evidenced by analyses of molecular variation in these data. These results further contextualize the chronology, and evolutionary relationships within this group, support the recognition of X. laevis sensu stricto, X. petersii, X. victorianus, and herein re-validated X. poweri as separate species. We also propose that portions of the currently recognized distributions of X. laevis (north of the Congo Basin) and X. petersii (south of the Congo Basin) be reassigned to X. poweri.
Data from: Limited evidence for third party affiliation during development in wild chimpanzees (Pan troglodytes schweinfurthii)
Examining the ontogeny of conflict-mitigating behaviors in our closest living relatives is an important component of understanding the evolutionary origins of cooperation in our species. In this study, we used 26 years of data to investigate the emergence of third party affiliation (TPA), defined as affiliative contact given to recipients of aggression by uninvolved bystanders (regardless of initiation), in wild immature eastern chimpanzees (Pan troglodytes schweinfurthii) of Gombe National Park, Tanzania. We also characterized TPA by mothers in the same dataset as an adult benchmark for interpreting immature TPA patterns. In summary, we found that immatures did not express TPA as measured by grooming between the ages of 1.5 - 12.0 years and that there was limited evidence that immatures expressed TPA via play. We also found that mothers did express TPA to offspring, although mothers did not show TPA towards non-offspring. Cases of TPA by mothers to other adults were too few to analyze separately. These results contrast with findings from captive studies which found that chimpanzees as young as 6 years of age demonstrated TPA. We argue that within-species variation in the expression of TPA, both in immatures and adulthood, provides evidence that the conflict management behaviors of young chimpanzees may be heavily influenced by social, ecological, and demographic factors.
Data from: First Latin American clinical practice guidelines for the treatment of systemic lupus erythematosus: Latin American Group for the Study of Lupus (GLADEL, Grupo Latino Americano de Estudio del Lupus)–Pan-American League of Associations of Rheumatology (PANLAR)
Systemic lupus erythematosus (SLE), a complex and heterogeneous autoimmune disease, represents a significant challenge for both diagnosis and treatment. Patients with SLE in Latin America face special problems that should be considered when therapeutic guidelines are developed. The objective of the study is to develop clinical practice guidelines for Latin American patients with lupus. Two independent teams (rheumatologists with experience in lupus management and methodologists) had an initial meeting in Panama City, Panama, in April 2016. They selected a list of questions for the clinical problems most commonly seen in Latin American patients with SLE. These were addressed with the best available evidence and summarised in a standardised format following the Grading of Recommendations Assessment, Development and Evaluation approach. All preliminary findings were discussed in a second face-to-face meeting in Washington, DC, in November 2016. As a result, nine organ/system sections are presented with the main findings; an 'overarching' treatment approach was added. Special emphasis was made on regional implementation issues. Best pharmacologic options were examined for musculoskeletal, mucocutaneous, kidney, cardiac, pulmonary, neuropsychiatric, haematological manifestations and the antiphospholipid syndrome. The roles of main therapeutic options (ie, glucocorticoids, antimalarials, immunosuppressant agents, therapeutic plasma exchange, belimumab, rituximab, abatacept, low-dose aspirin and anticoagulants) were summarised in each section. In all cases, benefits and harms, certainty of the evidence, values and preferences, feasibility, acceptability and equity issues were considered to produce a recommendation with special focus on ethnic and socioeconomic aspects. Guidelines for Latin American patients with lupus have been developed and could be used in similar settings.
Data from: Debugging diversity – a pan‐continental exploration of the potential of terrestrial blood‐feeding leeches as a vertebrate monitoring tool
The use of environmental DNA (eDNA) has become an applicable non-invasive tool with which to obtain information about biodiversity. A sub-discipline of eDNA is iDNA (invertebrate-derived DNA), where genetic material ingested by invertebrates is used to characterise the biodiversity of the species that served as hosts. While promising, these techniques are still in their infancy, as they have only been explored on limited numbers of samples from only a single or a few different locations. In this study, we investigate the suitability of iDNA extracted from more than 3,000 haematophagous terrestrial leeches as a tool for detecting a wide range of terrestrial vertebrates across five different geographical regions on three different continents. These regions cover almost the full geographical range of haematophagous terrestrial leeches, thus representing all parts of the world where this method might apply. We identify host taxa through metabarcoding coupled with high-throughput sequencing on Illumina and IonTorrent sequencing platforms to decrease economic costs and workload and thereby make the approach attractive for practitioners in conservation management. We identified hosts in four different taxonomic vertebrate classes: mammals, birds, reptiles, and amphibians, belonging to at least 42 different taxonomic families. We find that vertebrate blood ingested by haematophagous terrestrial leeches throughout their distribution is a viable source of DNA with which to examine a wide range of vertebrates. Thus, this study provides encouraging support for the potential of haematophagous terrestrial leeches as a tool for detecting and monitoring terrestrial vertebrate biodiversity.
Pan
Source: Objaverse 1.0 / Sketchfab
Pan from Willemeau
Pan from Willemeau (province of Hainaut), brass.Musée d'Art et d'Histoire (Musée du Cinquantenaire, Brussels, Belgium). Made out 475 pictures with CapturingReality. For more updates, please consider to follow me on Twitter at @GeoffreyMarchal. (https://twitter.com/GeoffreyMarchal) Source: Objaverse 1.0 / Sketchfab
FIGURE 22 in Paroster baylyi sp. n., P. ursulae sp. n. (Col. Dytiscidae, Hydroporinae) and the water beetle diversity of pan-gnammas on isolated granite outcrops in the Mallee of south-western Australia
FIGURE 22. Distribution of P. michaelseni (dots) P. baylyi sp. n. (diamonds) and P. ursulae sp. n. (star). The map was made by using MS ENCARTA 2000.
FIGURES 2–7 in Paroster baylyi sp. n., P. ursulae sp. n. (Col. Dytiscidae, Hydroporinae) and the water beetle diversity of pan-gnammas on isolated granite outcrops in the Mallee of south-western Australia
FIGURES 2–7. Habitus of 2) Paroster baylyi sp. n. (male); 3) P. baylyi sp. n. (female); 4) P. u r s u l a e sp. n. (male); 5) P. ursulae sp. n. (female); 6) P. michaelseni (holotype, male); 7) P. michaelseni (female).
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.