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975
datasets available to search
ShareScore release 0.9.0
Dataset results
975 results for “Spatial transcriptomics”
Spatiotemporal transcriptomic and metabolomic landscapes of wild soybean seed development reveal regulatory mechanisms of nutrient accumulation [Spatial Transcriptomics]
GEO Series GSE281070. Glycine soja. 2 samples. Type: Other.
A unified molecular approach for spatial epigenome, transcriptome, and cell lineages
GEO Series GSE279771. Mus musculus; Homo sapiens. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
Integrated single-cell RNA sequencing and spatial transcriptomics analysis reveals the tumor microenvironment in patients with endometrial cancer responding to anti-PD-1 treatment
GEO Series GSE251923. Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing; Other.
Defining Cellular Diversity at the Swine Maternal-Fetal Interface Using Spatial Transcriptomics and Organoids [MFI017_Visium]
GEO Series GSE296975. Sus scrofa. 15 samples. Type: Expression profiling by high throughput sequencing; Other.
Systematic benchmarking of imaging spatial transcriptomics platforms in FFPE tissues - CosMx Data
GEO Series GSE308146. Homo sapiens. 4 samples. Type: Other.
Spatial transcriptomics and in situ immune cell profiling of the host ectocervical landscape of HIV infected Kenyan sex working women
GEO Series GSE290350. Homo sapiens. 10 samples. Type: Expression profiling by high throughput sequencing.
Analysis of Spatial Transcriptomics for Unveiling the novel molecular characteristics of Recurrent and Non-Recurrent High-Grade Serous Ovarian Cancer
GEO Series GSE263920. Homo sapiens. 8 samples. Type: Other.
Tracing the temporal-spatial transcriptomic landscapes of the human fetal digestive tract by single cell RNA-seq analysis [adult tissues]
GEO Series GSE103154. Homo sapiens. 20 samples. Type: Expression profiling by high throughput sequencing.
In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics]
GEO Series GSE282302. Homo sapiens. 108 samples. Type: Other.
Common Mitochondrial Deletions in RNA-Seq: Evaluation of Bulk, Single-Cell and Spatial Transcriptomic Datasets
GEO Series GSE226663. Homo sapiens. 10 samples. Type: Expression profiling by high throughput sequencing; Other.
A spatial and projection-based transcriptomic atlas of paraventricular hypothalamic cell types (10X Chromium v3 multiplexed)
GEO Series GSE303083. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
Multi-transcriptomics reveals brain cellular responses to peripheral infection in Alzheimer's disease model mice [spatial transcriptomics]
GEO Series GSE218360. Mus musculus. 8 samples. Type: Other.
Spatial transcriptomics reveals functional compartmentalization of estrogen receptor positive (ER+) breast cancer
GEO Series GSE214571. Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing.
A Spatial Transcriptomics Atlas of the Malaria-infected Liver Indicates a Crucial Role for Lipid Metabolism and Hotspots of Inflammatory Cell Infiltration
GEO Series GSE268112. Plasmodium berghei ANKA; Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
NAD+ prevents chronic kidney disease by activating renal tubular metabolism - spatial transcriptomics
GEO Series GSE261872. Mus musculus. 4 samples. Type: Other.
Spatial transcriptomics reveals expression of novel genes during the remodelling of the embryonic human heart
GEO Series GSE244723. Homo sapiens. 9 samples. Type: Expression profiling by high throughput sequencing; Other.
Protocol for single-cell spatial transcriptomic profiling of cultured cells and engineered tissues without embedding or sectioning
GEO Series GSE296623. Homo sapiens. 1 samples. Type: Other.
Single-nucleus RNA sequencing demonstrates an autosomal dominant Alzheimer's disease profile and possible mechanisms of disease protection [spatial transcriptomics]
GEO Series GSE221365. Homo sapiens. 8 samples. Type: Expression profiling by high throughput sequencing; Other.
Spatial transcriptomic profiling (Visium) of meningioma
GEO Series GSE313694. Homo sapiens. 42 samples. Type: Other.
Exploring an essential biomarker in pulmonary fibrosis: an integrated and cross-disease approach with spatial transcriptomics and single-cell RNA sequencing
GEO Series GSE264233. Homo sapiens. 5 samples. Type: Expression profiling by high throughput sequencing; Other.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.