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608 results for “Species recognition”
Figure 11 from: Han H-Y, Ro K-E (2019) DNA barcoding reveals a species group of the genus Campiglossa (Diptera, Tephritidae, Tephritinae) with recognition of a new species from East Asia and previously unknown females of Campiglossa coei (Hardy). ZooKeys 899: 1-36. https://doi.org/10.3897/zookeys.899.46779
Figure 11 Macro photography setups for multi-day collecting trips. A A simple handmade collapsible macro-photography unit for focus stacking B A setup for photographing live tephritid flies. Please see the Materials and methods for details of the camera setups.
Figure 10 from: Han H-Y, Ro K-E (2019) DNA barcoding reveals a species group of the genus Campiglossa (Diptera, Tephritidae, Tephritinae) with recognition of a new species from East Asia and previously unknown females of Campiglossa coei (Hardy). ZooKeys 899: 1-36. https://doi.org/10.3897/zookeys.899.46779
Figure 10 A Holotype male of Campiglossa favillacea Ito, 2011 (new synonym of C. coei, UOPJ) B from left, two paratype females and holotype of C. favillacea [UOPJ] C holotype female of C. roscida Ito, 2011 (new synonym of C. misella) D ditto E holotype or paratype male wing of C. pishanicaF holotype male wing of C. propriaE, F reproduced from Wang (1998) with permission from Xing-Jian Wang.
Figure 1 from: Han H-Y, Ro K-E (2019) DNA barcoding reveals a species group of the genus Campiglossa (Diptera, Tephritidae, Tephritinae) with recognition of a new species from East Asia and previously unknown females of Campiglossa coei (Hardy). ZooKeys 899: 1-36. https://doi.org/10.3897/zookeys.899.46779
Figure 1 The genus Campiglossa portion of the neighbor-joining tree based on the Kimura 2-parameter distances of 7,223 tephritid DNA barcode sequences mostly extracted from BOLD Systems (www.boldsystems.org, as of Jan 2019), including 55 newly obtained Campiglossa sequences (names prefixed with Z). All 211 Campiglossa, Homoeotricha, and Dioxyna (regarded to be the genus Campiglossa, sensu lato, in this study) sequences were recovered as a monophyletic clade in this analysis. Putative species group names (in red) are marked on the respective branches.
Figure 9 from: Han H-Y, Ro K-E (2019) DNA barcoding reveals a species group of the genus Campiglossa (Diptera, Tephritidae, Tephritinae) with recognition of a new species from East Asia and previously unknown females of Campiglossa coei (Hardy). ZooKeys 899: 1-36. https://doi.org/10.3897/zookeys.899.46779
Figure 9 Male genitalia of Campiglossa melaenaA epandrial complex, lateral view B epandrial complex, caudal view C glans and preglans of distiphallus.
Figure 2 in The Platycerus (Coleoptera, Lucanidae) of California, with the recognition of Platycerus cribripennis Van Dyke as a valid species
Figure 2. Male genitalia of P. cribripennis, with sclerotized flagellum on the everted internal sac.
Supplementary material 2 from: Lavoué S, Zafirah Ghazali S, Amirul Firdaus Jamaluddin J, Azizah Mohd Nor S, Zain KMd (2020) Genetic evidence for the recognition of two allopatric species of Asian bronze featherback Notopterus (Teleostei, Osteoglossomorpha, Notopteridae). Zoosystematics and Evolution 96(2): 449-454. https://doi.org/10.3897/zse.96.51350
DNA Data matrice
Figure 1 from: Lavoué S, Zafirah Ghazali S, Amirul Firdaus Jamaluddin J, Azizah Mohd Nor S, Zain KMd (2020) Genetic evidence for the recognition of two allopatric species of Asian bronze featherback Notopterus (Teleostei, Osteoglossomorpha, Notopteridae). Zoosystematics and Evolution 96(2): 449-454. https://doi.org/10.3897/zse.96.51350
Figure 1 A Map covering the Oriental biogeographic region and showing the distribution of localities (black and red circles) of specimens of Notopterus examined in this study. Black star indicates the estimated type locality of Notopterus notopterus in Java (i.e. Jakarta region) and red stars indicate the likely origin localities of the two syntypes of Notopterus synurus (i.e. coast of Malabar and Coromandel coast at Tharangambadi [formerly Tranquebar]). Main Oriental river basins from West to East: 1. Indus basin; 2. Ganga-Brahmaputra river system; 3. Irrawaddy basin; 4. Salween basin, 5. Mekong basin. Insert shows the left lateral view of a specimen of Notopterus notopterus (Penang State, west Peninsular Malaysia; 20 cm in standard length, voucher specimen number USMFC (3) 00002, NO_1). B The unrooted network constructed with the software PopArt and a median-joining algorithm showing the COI haplotype relationships within the genus Notopterus. Branch lengths are not proportional to the number of changes. Red circles indicated haplotypes of Notopterus synurus (South Asia) and black circles indicated haplotypes of Notopterus notopterus (Southeast Asia).
Supplementary material 1 from: Lavoué S, Zafirah Ghazali S, Amirul Firdaus Jamaluddin J, Azizah Mohd Nor S, Zain KMd (2020) Genetic evidence for the recognition of two allopatric species of Asian bronze featherback Notopterus (Teleostei, Osteoglossomorpha, Notopteridae). Zoosystematics and Evolution 96(2): 449-454. https://doi.org/10.3897/zse.96.51350
Table S1
Figure 4 from: Kuephadungphan W, Tasanathai K, Petcharad B, Khonsanit A, Stadler M, Luangsa-ard JJ (2020) Phylogeny- and morphology-based recognition of new species in the spider-parasitic genus Gibellula (Hypocreales, Cordycipitaceae) from Thailand. MycoKeys 72: 17-42. https://doi.org/10.3897/mycokeys.72.55088
Figure 4 Gibellula pigmentosinuma fungus on spider (BBH 28509); b perithecia; c an ascus with an apical apparatus; d ascospore; e part-spores; f conidiophores; g conidial heads; h conidia; i granulomanus-like asexual morph; j colonies obverse and reverse on PDA at 25 °C after 28 days. Scale bars: 1 mm (b); 500 μm (d); 100 μm (f); 50 μm (g); 20 μm (c, i); 10 μm (e, h).
Figure 5 from: Kuephadungphan W, Tasanathai K, Petcharad B, Khonsanit A, Stadler M, Luangsa-ard JJ (2020) Phylogeny- and morphology-based recognition of new species in the spider-parasitic genus Gibellula (Hypocreales, Cordycipitaceae) from Thailand. MycoKeys 72: 17-42. https://doi.org/10.3897/mycokeys.72.55088
Figure 5 Gibellula scorpioidesa fungus on a spider (BBH 29669) b fungus on a spider (BBH 31439) c perithecia (BBH 31439) d conidiophores arising on synnema (BBH 29669) e penicillate conidiophore (BBH 29669) f conidia (BBH 29669) g asci (BBH 31439) h ascus with apical apparatus (BBH 31439) i ascospores (BBH 31439) j penicillate conidiophore produced on PDAk conidia on PDAl colonies obverse and reverse on PDA at 25 °C after 4 months. Scale bars: 500 μm (c); 50 μm (d, g); 20 μm (e, h–j); 10 μm (f, k).
Figure 2 from: Kuephadungphan W, Tasanathai K, Petcharad B, Khonsanit A, Stadler M, Luangsa-ard JJ (2020) Phylogeny- and morphology-based recognition of new species in the spider-parasitic genus Gibellula (Hypocreales, Cordycipitaceae) from Thailand. MycoKeys 72: 17-42. https://doi.org/10.3897/mycokeys.72.55088
Figure 2 Gibellula cebrenninia fungus on spider (BBH 35749) b perithecia c a part of synnema showing conidiophores d perithecium e asci with apical apparatus f ascospores g conidiophore h conidial head i conidia j granulomanus-like asexual morph k colonies obverse and reverse on PDA at 25 °C after 28 days. Scale bars: 1 mm (d); 50 μm (e–f, g); 20 μm (h, j); 10 μm (i).
Figure 3 from: Kuephadungphan W, Tasanathai K, Petcharad B, Khonsanit A, Stadler M, Luangsa-ard JJ (2020) Phylogeny- and morphology-based recognition of new species in the spider-parasitic genus Gibellula (Hypocreales, Cordycipitaceae) from Thailand. MycoKeys 72: 17-42. https://doi.org/10.3897/mycokeys.72.55088
Figure 3 Gibellula fusiformisporaa fungus on a spider (BBH 38838) b fungus on a spider (BBH 32918) c synnemata (BBH 32918) d, e perithecia (BBH 38838) f ascus (BBH 38838) g ascospores (BBH 38838) h conidia (BBH 32918) i conidiophores showing conidial heads (BBH 32918) j conidial head bearing conidia (BCC 32918) k colonies obverse and reverse on PDA at 25 °C after 20 days. Scale bars: 250 μm (e); 100 μm (i); 50 μm (g); 20 μm (f, h, j).
Figure 1 from: Kuephadungphan W, Tasanathai K, Petcharad B, Khonsanit A, Stadler M, Luangsa-ard JJ (2020) Phylogeny- and morphology-based recognition of new species in the spider-parasitic genus Gibellula (Hypocreales, Cordycipitaceae) from Thailand. MycoKeys 72: 17-42. https://doi.org/10.3897/mycokeys.72.55088
Figure 1 Phylogenetic tree inferred from a RAxML search of a concatenated alignment of ITS, LSU, TEF1, RPB1 and RPB2 showing the relationship among Gibellula and related genera. Bootstrap proportions/ Bayesian posterior probabilities ≥ 50% are provided above corresponding nodes; nodes with 100% support are shown as thick lines. The ex-type strains are marked with a superscript T (T) and the isolates reported in this study are bold.
Figure 3 from: Peterson PM, Sylvester SP, Romaschenko K, Soreng RJ, Barberá P, Quintanar A, Aedo C (2020) A phylogeny of species near Agrostis supporting the recognition of two new genera, Agrostula and Alpagrostis (Poaceae, Pooideae, Agrostidinae) from Europe. PhytoKeys 167: 57-82. https://doi.org/10.3897/phytokeys.167.55171
Figure 3 Neotype of Agrostis setacea Curtis [= Alpagrostis setacea (Poir.) P.M. Peterson, Romasch., Soreng & Sylvester] from Curtis's garden (BM-001144085), upper left hand specimen indicated by A.
Figure 2 from: Peterson PM, Sylvester SP, Romaschenko K, Soreng RJ, Barberá P, Quintanar A, Aedo C (2020) A phylogeny of species near Agrostis supporting the recognition of two new genera, Agrostula and Alpagrostis (Poaceae, Pooideae, Agrostidinae) from Europe. PhytoKeys 167: 57-82. https://doi.org/10.3897/phytokeys.167.55171
Figure 2 Alpagrostis alpinaA, D spikelets B caryopsis C floret E floret, showing dorsal surface. Plant fragments taken from Sain-Lager 3 (US-1628154).
Figure 1 from: Peterson PM, Sylvester SP, Romaschenko K, Soreng RJ, Barberá P, Quintanar A, Aedo C (2020) A phylogeny of species near Agrostis supporting the recognition of two new genera, Agrostula and Alpagrostis (Poaceae, Pooideae, Agrostidinae) from Europe. PhytoKeys 167: 57-82. https://doi.org/10.3897/phytokeys.167.55171
Figure 1 Maximum-likelihood tree inferred from combined plastid (rpl32-trnL, rps16 intron, rps16-trnK) and ITS sequences. Numbers above the branches are posterior probabilities; numbers below the branches are bootstrap values; accessions marked with an asterisk* were formerly included in Neoschischkinia; and letters refer to clade A = Agrostis subg. Agrostis and clade B = A. subg. Vilfa. Scale bar: 0.002 substitutions per site.
Duet codes do not enhance neighbour recognition in two closely related species of neotropical wrens
<p class="Body"><span><span><span><span><span><span><span><span><span><span>Numerous studies have shown that territorial animals exhibit less aggression in response to neighbours than to strangers, a phenomenon known as <i>dear enemy effect</i>. The influence of acoustic features, such as song type sharing and repertoire sizes, in neighbour recognition has been widely documented in male songbirds. However, few studies have focused on duetting species, and particularly on those where pairs have pair-specific duet codes (consistent associations of their individual phrase types). Given that each pair in the population can have a unique repertoire of duet types, duet codes have been hypothesized to enhance discrimination. In this context, we tested for evidence of neighbour recognition and duet code discrimination in two closely related species of neotropical wrens, the riverside wren, <i>Cantorchilus semibadius</i>, and the canebrake wren, <i>C. modestus zeledoni</i>. Although both species have moderately large repertoires, riverside wrens have higher levels of phrase type and duet type sharing across the population. We compared the approach and vocal responses of focal pairs to three playback treatments: neighbours' correct duet type, neighbours' incorrect duet type, and a strangers' duet type. We found that riverside wrens displayed a stronger response to the strangers' playback than to both neighbours' playbacks, whereas no differences among treatments were found in canebrake wrens. Given that both species exhibited similar levels of aggression during neighbour playbacks, regardless of whether the correct duet code was used, our findings suggest duet codes do not facilitate neighbour recognition. We conclude that the function of duet codes in these species might be more closely related to intra-pair communication. Finally, we suggest that the level of dear enemy effect a species exhibits depends on ecological factors that influence the perceived level of threat of territory intruders.</span></span></span></span></span></span></span></span></span></span></p>
Figure 38 from: Albano PG, Steger J, Bakker PAJ, Bogi C, Bošnjak M, Guy-Haim T, Huseyinoglu MF, LaFollette PI, Lubinevsky H, Mulas M, Stockinger M, Azzarone M, Sabelli B (2021) Numerous new records of tropical non-indigenous species in the Eastern Mediterranean highlight the challenges of their recognition and identification. ZooKeys 1010: 1-95. https://doi.org/10.3897/zookeys.1010.58759
Figure 38 Pegophysema cf. philippiana (Reeve, 1850), Palmachim, Israel, Shafdan project (sample 24(B)): right valve outer (A) and dorsal (B) views. The pink hue is due to staining with eosin solution. Photograph courtesy S. Bartolini. Scale bar: 5 mm.
Figure 40 from: Albano PG, Steger J, Bakker PAJ, Bogi C, Bošnjak M, Guy-Haim T, Huseyinoglu MF, LaFollette PI, Lubinevsky H, Mulas M, Stockinger M, Azzarone M, Sabelli B (2021) Numerous new records of tropical non-indigenous species in the Eastern Mediterranean highlight the challenges of their recognition and identification. ZooKeys 1010: 1-95. https://doi.org/10.3897/zookeys.1010.58759
Figure 40 Nudiscintilla cf. glabra Lützen & Nielsen, 2005 (sensu Mifsud and Ovalis 2012) A–E Nahariyya, Israel, HELM project (sample D7): outer (A) and inner (B) views, detail of hinge (C) and hinge in dorsal view (D, E) of right valve F, G Palmachim, Israel, HELM project (sample H17): right (F) and left (G) valve outer views. Scale bars: 3 mm (A, B); 0.5 mm (C, D); 0.2 mm (E); 1 mm (F, G).
Figure 37 from: Albano PG, Steger J, Bakker PAJ, Bogi C, Bošnjak M, Guy-Haim T, Huseyinoglu MF, LaFollette PI, Lubinevsky H, Mulas M, Stockinger M, Azzarone M, Sabelli B (2021) Numerous new records of tropical non-indigenous species in the Eastern Mediterranean highlight the challenges of their recognition and identification. ZooKeys 1010: 1-95. https://doi.org/10.3897/zookeys.1010.58759
Figure 37 Isognomon aff. australica (Reeve, 1858) (sensu Angelidis and Polyzoulis 2018) A, B, D, E Esentepe, Cyprus (sample NCY3H): left valve outer (A) and inner (B) views, right valve inner (D) and outer (E) views C, F Plakias, Crete (sample Rh.05_4M): left (C) and right (F) valve outer views. Scale bars: 2 mm.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
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DANDI Archive for NWB datasets
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The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.