Research Dataset Catalog and ShareScore Ratings | ScienceDex

zenodo36/100

Figure data for the manuscript "SI-traceable frequency dissemination at 1572.06 nm in a stabilized fiber network with ring topology"

This file contains the data shown in Fig. 1, Fig 3, Fig. 4,  Fig. 5 and Fig. 6 of the manuscript "SI-traceable frequency dissemination at 1572.06 nm in a stabilized fiber network with ring topology". Additional information on the data and processing procedure are available from the author upon reasonable request.

opencc-by-4.0Jun 2021View details →

zenodo36/100

The results of the in vitro assay of the EHEC PpdD type IVa pilus stability

The raw data figure used to prepare Fig. 5F and Fig. 6B in Karami et al., Structure, 2021. The pili were assembled by the enterohemorrhagic Escherichia coli T4aP assembly system reconstituted in E. coli K12. To assess pilus stability in vitro, equivalent amounts of purified pili were taken and resuspended in buffer (50 mM HEPES, 50 mM NaCl). The pilus samples were supplemented with 10 mM EGTA, 10 mM EGTA + 20 mM CaCl2, or 40 mM DTT, incubated at indicated temperatures for 5 min and then placed on ice. Intact pili were separated from dissociated PpdD subunits by a 30-min centrifugation at 53 000 rpm in the Beckman TLA55 rotor and table-top ultracentrifuge at 4°C. Equivalent amounts of total (T), pili-containing pellet (P) and supernatant fractions containing dissociated pilin subunits (S) were analysed on 10% Tris-Tricin SDS-PAGE and stained with Coomassie Brilliant Blue R. The image was recorded using a BioRad Gel Doc imager.

opencc-by-4.0Dec 2020View details →

dryad36/100

Data from: Modulation of yaw stability with an unstable rigid body and a stabilising caudal fin in the yellow boxfish (Ostracion cubicus)

Despite that boxfishes have a rigid carapace that restricts body undulation, they are highly manoeuvrable and manage to swim with remarkably dynamic stability. Recent research has indicated that the rigid body shape of boxfishes shows an inherently unstable response in its rotations caused by course-disturbing flows. Hence, any net stabilising effect should come from the fish's fins. The aim of the current study was to determine the effect of the surface area and orientation of the caudal fin on the yaw torque exerted on the yellow boxfish, Ostracion cubicus, a square cross-sectional shaped species of boxfish. Yaw torques quantified in a flow tank using a physical model with an attachable closed or open caudal fin at different body and tail angles and at different water flow speeds showed that the caudal fin is crucial for controlling yaw. These flow tank results were confirmed by computational fluid dynamics simulations. The caudal fin therefore acts as both a stabiliser and rudder for the naturally unstable rigid body with regard to yaw. Boxfishes seem to use the interaction of the unstable body and active changes in the shape and orientation of the caudal fin to modulate manoeuvrability and stability.

opencc-zeroDec 2019View details →

dryad36/100

Drivers of change and stability in the gut microbiota of an omnivorous avian migrant exposed to artificial food supplementation

Human activities shape resources available to wild animals, impacting diet and likely altering their microbiota and overall health. We examined drivers shaping microbiota profiles of common cranes (Grus grus) in agricultural habitats by comparing gut microbiota and crane movement patterns (GPS-tracking) over three periods of their migratory cycle, and by analyzing the effect of artificially-supplemented food provided as part of a crane-agriculture management program. We sampled fecal droppings in Russia (non-supplemented, pre-migration) and in Israel in late fall (non-supplemented, post-migration) and winter (supplemented and non-supplemented, wintering). As supplemented food is typically homogenous, we predicted lower microbiota diversity and different composition in birds relying on supplementary feeding. We did not observe changes in microbial diversity with food supplementation, as diversity differed only in samples from non-supplemented wintering sites. However, both food supplementation and season affected bacterial community composition and led to increased abundance of specific genera (mostly Firmicutes). Cranes from the non-supplemented groups spent most of their time in agricultural fields, likely feeding on residual grain when available, while food-supplemented cranes spent most of their time at the feeding station. Thus, non-supplemented and food-supplemented diets likely diverge only in winter, when crop rotation and depletion of anthropogenic resources may lead to a more variable diet in non-supplemented sites. Our results support the role of diet in structuring bacterial communities and show that they undergo both seasonal and human-induced shifts. Movement analyses provide important clues regarding host diet and behavior towards understanding how human-induced changes shape the gut microbiota in wild animals.

opencc-zeroJul 2021View details →

zenodo36/100

Modelled gas hydrate stability zone extents for Svalbard's fjord and near-shore settings

Supplementary data to the published paper 'Modelling of the gas hydrate potential in Svalbard's fjords' (https://doi.org/10.1016/j.jngse.2021.104127). This archive includes geopackage files for each of the targeted fjords and contains (amongst others) bathymetric depth (Z, metres), top and base of the modelled GHSZ (GHSZ_T/GHSZ_B, metres depth), cumulative GHSZ cell count (#, 25 metres per), and the number of CTD data points within the radius (CTD_count and CTD2deep). Included onshore modelling data is to be ignored and considered a modelling artefact.

opencc-by-4.0Jul 2021View details →

zenodo36/100

Dataset: Stability of hemicarbonate under cement paste-like conditions

Data, and scripts (analysis, plots) to go with the publication: Stability of hemicarbonate under cement paste-like conditions Fabien Georget (a,1,&lowast;), Barbara Lothenbach (b) , William Wilson (a,c) , Franco Zunino (a) Karen L. Scrivener (a) a: aboratory  of Construction Materials, LMC, EPFL-STI-IMX, Station 12, CH-1015 Lausanne, Switzerland b: Empa, Concrete & Asphalt Laboratory, Dübendorf, Switzerland c: Sherbrooke University, Sherbrooke, Quebec, Canada 1: current address: Institute of Building Materials Research, RWTH Aachen, Aachen, Germany * corresponding author To be submitted to Cement and Concrete Research

opencc-by-4.0Jul 2021View details →

dryad36/100

The validation of new phase-dependent gait stability measures: a modelling approach

Identification of individuals at risk of falling is important when designing fall prevention methods. Current stability measures that estimate gait stability and robustness appear limited in predicting falls in older adults. Inspired by recent findings of phase-dependent local stability changes within a gait cycle, we used compass-walker models to test several phase-dependent stability metrics for their usefulness to predict gait robustness. These metrics are closely related to the often-employed maximum finite-time Lyapunov exponent and maximum Floquet multiplier. They entail linearizing the system in a rotating hypersurface orthogonal to the period-one solution, and estimating the local divergence rate of the swing phases and the foot strikes. We correlated the metrics with the gait robustness of two compass walker models with either point or circular feet to estimate their prediction accuracy. To also test for the metrics' invariance under coordinate transform, we represented the point-feet walker in both Euler-Lagrange and Hamiltonian canonical form. Our simulations revealed that for most of the metrics, correlations differ between models and also change under coordinate transforms, severely limiting the prediction accuracy of gait robustness. The only exception that consistently correlated with gait robustness is the divergence of foot strikes. These results admit challenges of using phase-dependent stability metrics as objective measure to quantify gait robustness.

opencc-zeroJul 2021View details →

dryad36/100

Long-term stability of cortical ensembles

Neuronal ensembles, coactive groups of neurons found in spontaneous and evoked cortical activity, are causally related to memories and perception, but it still unknown how stable or flexible they are over time. We used two-photon multiplane calcium imaging to track over weeks the activity of the same pyramidal neurons in layer 2/3 of the visual cortex from awake mice and recorded their spontaneous and visually evoked responses. Less than half of the neurons were commonly active across any two imaging sessions. These "common neurons" formed stable ensembles lasting weeks, but some ensembles were also transient and appeared only in one single session. Stable ensembles preserved ~68 % of their neurons up to 46 days, our longest imaged period, and these "core" cells had stronger functional connectivity. Our results demonstrate that neuronal ensembles can last for weeks and could, in principle, serve as a substrate for long-lasting representation of perceptual states or memories.

opencc-zeroJul 2021View details →

zenodo36/100

Stacking Sequence, Interlayer Bonding, Termination Group Stability and Li/Na/Mg diffusion in MXenes

Input-files and structures. tree-structure of files:  . ├── h2_molecule_in_vacuum │   └── output │       ├── CONTCAR │       ├── INCAR │       ├── KPOINTS │       ├── OUTCAR │       └── POSCAR ├── readme ├── ti3c2t2 │   ├── octahedral │   │   ├── 1x1_clcl │   │   │   └── output │   │   │       ├── CONTCAR │   │   │       ├── INCAR │   │   │       ├── KPOINTS │   │   │       ├── OUTCAR │   │   │       └── POSCAR │   │   ├── 1x1_ff │   │   │   └── output │   │   │       ├── CONTCAR │   │   │       ├── INCAR │   │   │       ├── KPOINTS │   │   │       ├── OUTCAR │   │   │       └── POSCAR │   │   ├── 1x1_fho │   │   │   └── output │   │   │       ├── CONTCAR │   │   │       ├── INCAR │   │   │       ├── KPOINTS │   │   │       ├── OUTCAR │   │   │       └── POSCAR │   │   ├── 1x1_fo │   │   │   └── output │   │   │       ├── CONTCAR │   │   │       ├── INCAR │   │   │       ├── KPOINTS │   │   │       ├── OUTCAR │   │   │       └── POSCAR │   │   ├── 1x1_ohho │   │   │   └── output │   │   │       ├── CONTCAR │   │   │       ├── INCAR │   │   │       ├── KPOINTS │   │   │       ├── OUTCAR │   │   │       └── POSCAR │   │   ├── 1x1_oho │   │   │   └── output │   │   │       ├── CONTCAR │   │   │       ├── INCAR │   │   │       ├── KPOINTS │   │   │       ├── OUTCAR │   │   │       └── POSCAR │   │   ├── 1x1_oo │   │   │   └── output │   │   │       ├── CONTCAR │   │   │       ├── INCAR │   │   │       ├── KPOINTS │   │   │       ├── OUTCAR │   │   │       └── POSCAR │   │   ├── neb_li_2_image │   │   │   └── output │   │   │       ├── 00 │   │   │       │   ├── OUTCAR │   │   │       │   ├── POSCAR │   │   │       │   └── old_POSCAR │   │   │       ├── 01 │   │   │       │   ├── CONTCAR │   │   │       │   ├── OUTCAR │   │   │       │   ├── POSCAR │   │   │       │   └── old_POSCAR │   │   │       ├── 02 │   │   │       │   ├── CONTCAR │   │   │       │   ├── OUTCAR │   │   │       │   ├── POSCAR │   │   │       │   └── old_POSCAR │   │   │       ├── 03 │   │   │       │   ├── OUTCAR │   │   │       │   ├── POSCAR │   │   │       │   └── old_POSCAR │   │   │       ├── INCAR │   │   │       ├── KPOINTS │   │   │       └── neb.dat │   │   ├── neb_li_5_image │   │   │   ├── neb.dat │   │   │   └── output │   │   │       ├── 00 │   │   │       │   ├── OUTCAR │   │   │       │   ├── POSCAR │   │   │       │   └── old_POSCAR │   │   │       ├── 01 │   │   │       │   ├── CONTCAR │   │   │       │   ├── OUTCAR │   │   │       │   ├── POSCAR │   │   │       │   ├── fe.dat │   │   │       │   └── old_POSCAR │   │   │       ├── 02 │   │   │       │   ├── CONTCAR │   │   │       │   ├── OUTCAR │   │   │       │   ├── POSCAR │   │   │       │   ├── fe.dat │   │   │       │   └── old_POSCAR │   │   │       ├── 03 │   │   │       │   ├── CONTCAR │   │   │       │   ├── OUTCAR │   │   │       │   ├── POSCAR │   │   │       │   ├── fe.dat │   │   │       │   └── old_POSCAR │   │   │       ├── 04 │   │   │       │   ├── CONTCAR │   │   │       │   ├── OUTCAR │   │   │       │   ├── POSCAR │   │   │       │   ├── fe.dat │   │   │       │   └── old_POSCAR │   │   │       ├── 05 │   │   │       │   ├── CONTCAR │   │   │       │   ├── OUTCAR │   │   │       │   ├── POSCAR │   │   │       │   ├── fe.dat │   │   │       │   └── old_POSCAR │   │   │       ├── 06 │   │   │       │   ├── OUTCAR │   │   │       │   ├── POSCAR │   │   │       │   └── old_POSCAR │   │   │       ├── INCAR │   │   │       ├── KPOINTS │   │   │       ├── POSCAR │   │   │       └── neb.dat │   │   ├── neb_li_endpoint_2image │   │   │   └── output │   │   │       ├── CONTCAR │   │   │       ├── INCAR │   │   │       ├── KPOINTS │   │   │       ├── OUTCAR │   │   │       └── POSCAR │   │   ├── neb_li_endpoint_5image │   │   │   └── output │   │   │       ├── CONTCAR │   │   │       ├── INCAR │   │   │       ├── KPOINTS │   │   │       ├── OUTCAR │   │   │       └── POSCAR │   │   ├── neb_li_startpoint │   │   │   └── output │   │   │       ├── CONTCAR │   │   │       ├── INCAR │   │   │       ├── KPOINTS │   │   │       ├── OUTCAR │   │   │       └── POSCAR │   │   ├── neb_mg │   │   │   └── output │   │   │       ├── 00 │   │   │       │   ├── OUTCAR │   │   │       │   └── POSCAR │   │   │       ├── 01 │   │   │       │   ├── CONTCAR │   │   │       │   ├── OUTCAR │   │   │       │   ├── POSCAR │   │   │       │   └── fe.dat │   │   │       ├── 02 │   │   │       │   ├── CONTCAR │   │   │       │   ├── OUTCAR │   │   │       │   ├── POSCAR │   │   │       │   └── fe.dat │   │   │       ├── 03 │   │   │       │   ├── OUTCAR │   │   │       │   └── POSCAR │   │   │       ├── INCAR │   │   │       ├── KPOINTS │   │   │       └── neb.dat │   │   ├── neb_mg_5_image │   │   ├── neb_mg_endpoint │   │   │   └── output │   │   │       ├── CONTCAR │   │   │       ├── INCAR │   │   │       ├── KPOINTS │   │   │       ├── OUTCAR │   │   │       └── POSCAR │   │   ├── neb_mg_startpoint │   │   │   └── output │   │   │       ├── CONTCAR │   │   │       ├── INCAR │   │   │       ├── KPOINTS │   │   │       ├── OUTCAR │   │   │       └── POSCAR │   │   ├── neb_na │   │   │   └── output │   │   │       ├── 00 │   │   │       │   ├── OUTCAR │   │   │       │   └── POSCAR │   │   │       ├── 01 │   │   │       │   ├── CONTCAR │   │   │       │   ├── OUTCAR │   │   │       │   └── POSCAR │   │   │       ├── 02 │   │   │       │   ├── CONTCAR │   │   │       │   ├── OUTCAR │   │   │       │   └── POSCAR │   │   │       ├── 03 │   │   │       │   ├── OUTCAR │   │   │       │   └── POSCAR │   │   │       ├── INCAR │   │   │       ├── KPOINTS │   │   │       └── neb.dat │   │   ├── neb_na_endpoint │   │   │   └── output │   │   │       ├── CONTCAR │   │   │       ├── INCAR │   │   │       ├── KPOINTS │   │   │       ├── OUTCAR │   │   │       └── POSCAR │   │   ├── neb_na_startpoint │   │   │   └── output │   │   │       ├── CONTCAR │   │   │       ├── INCAR │   │   │       ├── KPOINTS │   │   │       ├── OUTCAR │   │   │       └── POSCAR │   │   ├── neb_template │   │   │   └── output │   │   │       ├── CONTCAR │   │   │       ├── INCAR │   │   │       ├── KPOINTS │   │   │       ├── OUTCAR │   │   │       └── POSCAR │   │   └── site_test │   │       ├── cmcm │   │       │   └── output │   │       │       ├── CONTCAR │   │       │       ├── INCAR │   │       │       ├── KPOINTS │   │       │       ├── OUTCAR │   │       │       └── POSCAR │   │       ├── mtmt │   │       │   └── output │   │       │       ├── CONTCAR │   │       │       ├── INCAR │   │       │       ├── KPOINTS │   │       │       ├── OUTCAR │   │       │       └── POSCAR │   │       └── tctc │   │           └── output │   │               ├── CONTCAR │   │               ├── INCAR │   │               ├── KPOINTS │   │               ├── OUTCAR │   │               └── POSCAR │   ├── singlelayer │   │   ├── sl_clcl │   │   │   └── output │   │   │       ├── CONTCAR │   │   │       ├── INCAR │   │   │       ├── KPOINTS │   │   │       ├── OUTCAR │   │   │       └── POSCAR │   │   ├── sl_ff │   │   │   └── output │   │   │       ├── CONTCAR │   │   │       ├── INCAR │   │   │       ├── KPOINTS │   │   │       ├── OUTCAR │   │   │       └── POSCAR │   │   ├── sl_fho │   │   │   └── output │   │   │       ├── CONTCAR │   │   │       ├── INCAR │   │   │       ├── KPOINTS │   │   │       ├── OUTCAR │   │   │       └── POSCAR │   │   ├── sl_fo │   │   │   └── output │   │   │       ├── CONTCAR │   │   │       ├── INCAR │   │   │       ├── KPOINTS │   │   │       ├── OUTCAR │   │   │       └── POSCAR │   │   ├── sl_ohho │   │   │   └── output │   │   │       ├── CONTCAR │   │   │       ├── INCAR │   │   │       ├── KPOINTS │   │   │       ├── OUTCAR │   │   │       └── POSCAR │   │   ├── sl_oho │   │   │   └── output │   │   │       ├── CONTCAR │   │   │       ├── INCAR │   │   │       ├── KPOINTS │   │   │       ├── OUTCAR │   │   │       └── POSCAR │   │   └── sl_oo │   │       └── output │   │           ├── CONTCAR │   │           ├── INCAR │   │           ├── KPOINTS │   │           ├── OUTCAR │   │           └── POSCAR │   └── trigonal │       ├── 1x1_clcl │       │   └── output │       │       ├── CONTCAR │       │       ├── INCAR │       │       ├── KPOINTS │       │       ├── OUTCAR │       │       └── POSCAR │       ├── 1x1_ff │       │   └── output │       │       ├── CONTCAR │       │       ├── INCAR │       │       ├── KPOINTS │       │       ├── OUTCAR │       │       └── POSCAR │       ├── 1x1_fho │       │   └── output │       │       ├── CONTCAR │       │       ├── INCAR │       │       ├── KPOINTS │       │       ├── OUTCAR │       │       └── POSCAR │       ├── 1x1_fo │       │   └── output │       │       ├── CONTCAR │       │       ├── INCAR │       │       ├── KPOINTS │       │       ├── OUTCAR │       │       └── POSCAR │       ├── 1x1_ohho │       │   └── output │       │       ├── CONTCAR │       │       ├── INCAR │       │       ├── KPOINTS │       │       ├── OUTCAR │       │       └── POSCAR │       ├── 1x1_oho │       │   └── output │       │       ├── CONTCAR │       │       ├── INCAR │       │       ├── KPOINTS │       │       ├── OUTCAR │       │       └── POSCAR │       ├── 1x1_oo │       │   └── output │       │       ├── CONTCAR │       │       ├── INCAR │       │       ├── KPOINTS │       │       ├── OUTCAR │       │       └── POSCAR │       ├── neb_li_2_image │       │   └── output │       │       ├── 00 │       │       │   ├── OUTCAR │       │       │   └── POSCAR │       │       ├── 01 │       │       │   ├── CONTCAR │       │       │   ├── OUTCAR │       │       │   └── POSCAR │       │       ├── 02 │       │       │   ├── CONTCAR │       │       │   ├── OUTCAR │       │       │   └── POSCAR │       │       ├── 03 │       │       │   ├── OUTCAR │       │       │   └── POSCAR │       │       ├── INCAR │       │       ├── KPOINTS │       │       └── neb.dat │       ├── neb_li_5_image │       │   └── output │       │       ├── 00 │       │       │   ├── OUTCAR │       │       │   └── POSCAR │       │       ├── 01 │       │       │   ├── CONTCAR │       │       │   ├── OUTCAR │       │       │   └── POSCAR │       │       ├── 02 │       │       │   ├── CONTCAR │       │       │   ├── OUTCAR │       │       │   └── POSCAR │       │       ├── 03 │       │       │   ├── CONTCAR │       │       │   ├── OUTCAR │       │       │   └── POSCAR │       │       ├── 04 │       │       │   ├── CONTCAR │       │       │   ├── OUTCAR │       │       │   └── POSCAR │       │       ├── 05 │       │       │   ├── CONTCAR │       │       │   ├── OUTCAR │       │       │   └── POSCAR │       │       ├── 06 │       │       │   ├── OUTCAR │       │       │   └── POSCAR │       │       ├── INCAR │       │       ├── KPOINTS │       │       └── neb.dat │       ├── neb_li_endpoint_2image │       │   └── output │       │       ├── CONTCAR │       │       ├── INCAR │       │       ├── KPOINTS │       │       ├── OUTCAR │       │       └── POSCAR │       ├── neb_li_endpoint_5image │       │   └── output │       │       ├── CONTCAR │       │       ├── INCAR │       │       ├── KPOINTS │       │       ├── OUTCAR │       │       └── POSCAR │       ├── neb_li_startpoint │       │   └── output │       │       ├── CONTCAR │       │       ├── INCAR │       │       ├── KPOINTS │       │       ├── OUTCAR │       │       └── POSCAR │       ├── neb_mg │       │   └── output │       │       ├── 00 │       │       │   ├── OUTCAR │       │       │   └── POSCAR │       │       ├── 01 │       │       │   ├── CONTCAR │       │       │   ├── OUTCAR │       │       │   └── POSCAR │       │       ├── 02 │       │       │   ├── CONTCAR │       │       │   ├── OUTCAR │       │       │   └── POSCAR │       │       ├── 03 │       │       │   ├── OUTCAR │       │       │   └── POSCAR │       │       ├── INCAR │       │       ├── KPOINTS │       │       └── neb.dat │       ├── neb_mg_5_image │       │   └── output │       │       ├── 00 │       │       │   ├── OUTCAR │       │       │   └── POSCAR │       │       ├── 01 │       │       │   ├── CONTCAR │       │       │   ├── OUTCAR │       │       │   └── POSCAR │       │       ├── 02 │       │       │   ├── CONTCAR │       │       │   ├── OUTCAR │       │       │   └── POSCAR │       │       ├── 03 │       │       │   ├── CONTCAR │       │       │   ├── OUTCAR │       │       │   └── POSCAR │       │       ├── 04 │       │       │   ├── CONTCAR │       │       │   ├── OUTCAR │       │       │   └── POSCAR │       │       ├── 05 │       │       │   ├── CONTCAR │       │       │   ├── OUTCAR │       │       │   └── POSCAR │       │       ├── 06 │       │       │   ├── OUTCAR │       │       │   └── POSCAR │       │       ├── INCAR │       │       ├── KPOINTS │       │       └── neb.dat │       ├── neb_mg_endpoint │       │   └── output │       │       ├── CONTCAR │       │       ├── INCAR │       │       ├── KPOINTS │       │       ├── OUTCAR │       │       └── POSCAR │       ├── neb_mg_startpoint │       │   └── output │       │       ├── CONTCAR │       │       ├── INCAR │       │       ├── KPOINTS │       │       ├── OUTCAR │       │       └── POSCAR │       ├── neb_na │       │   └── output │       │       ├── 00 │       │       │   ├── OUTCAR │       │       │   └── POSCAR │       │       ├── 01 │       │       │   ├── CONTCAR │       │       │   ├── OUTCAR │       │       │   └── POSCAR │       │       ├── 02 │       │       │   ├── CONTCAR │       │       │   ├── OUTCAR │       │       │   └── POSCAR │       │       ├── 03 │       │       │   ├── OUTCAR │       │       │   └── POSCAR │       │       ├── INCAR │       │       ├── KPOINTS │       │       └── neb.dat │       ├── neb_na_endpoint │       │   └── output │       │       ├── CONTCAR │       │       ├── INCAR │       │       ├── KPOINTS │       │       ├── OUTCAR │       │       └── POSCAR │       ├── neb_na_startpoint │       │   └── output │       │       ├── CONTCAR │       │       ├── INCAR │       │       ├── KPOINTS │       │       ├── OUTCAR │       │       └── POSCAR │       └── neb_template │           └── output │               ├── CONTCAR │               ├── INCAR │               ├── KPOINTS │               ├── OUTCAR │               └── POSCAR ├── v2ct2 │   ├── octahedral │   │   ├── 1x1_clcl │   │   │   └── output │   │   │       ├── CONTCAR │   │   │       ├── INCAR │   │   │       ├── KPOINTS │   │   │       ├── OUTCAR │   │   │       └── POSCAR │   │   ├── 1x1_ff │   │   │   └── output │   │   │       ├── CONTCAR │   │   │       ├── INCAR │   │   │       ├── KPOINTS │   │   │       ├── OUTCAR │   │   │       └── POSCAR │   │   ├── 1x1_fho │   │   │   └── output │   │   │       ├── CONTCAR │   │   │       ├── INCAR │   │   │       ├── KPOINTS │   │   │       ├── OUTCAR │   │   │       └── POSCAR │   │   ├── 1x1_fo │   │   │   └── output │   │   │       ├── CONTCAR │   │   │       ├── INCAR │   │   │       ├── KPOINTS │   │   │       ├── OUTCAR │   │   │       └── POSCAR │   │   ├── 1x1_ohho │   │   │   └── output │   │   │       ├── CONTCAR │   │   │       ├── INCAR │   │   │       ├── KPOINTS │   │   │       ├── OUTCAR │   │   │       └── POSCAR │   │   ├── 1x1_oho │   │   │   └── output │   │   │       ├── CONTCAR │   │   │       ├── INCAR │   │   │       ├── KPOINTS │   │   │       ├── OUTCAR │   │   │       └── POSCAR │   │   └── 1x1_oo │   │       └── output │   │           ├── CONTCAR │   │           ├── INCAR │   │           ├── KPOINTS │   │           ├── OUTCAR │   │           └── POSCAR │   ├── singlelayer │   │   ├── sl_clcl │   │   │   └── output │   │   │       ├── CONTCAR │   │   │       ├── INCAR │   │   │       ├── KPOINTS │   │   │       ├── OUTCAR │   │   │       └── POSCAR │   │   ├── sl_ff │   │   │   └── output │   │   │       ├── CONTCAR │   │   │       ├── INCAR │   │   │       ├── KPOINTS │   │   │       ├── OUTCAR │   │   │       └── POSCAR │   │   ├── sl_fho │   │   │   └── output │   │   │       ├── CONTCAR │   │   │       ├── INCAR │   │   │       ├── KPOINTS │   │   │       ├── OUTCAR │   │   │       └── POSCAR │   │   ├── sl_fo │   │   │   └── output │   │   │       ├── CONTCAR │   │   │       ├── INCAR │   │   │       ├── KPOINTS │   │   │       ├── OUTCAR │   │   │       └── POSCAR │   │   ├── sl_ohho │   │   │   └── output │   │   │       ├── CONTCAR │   │   │       ├── INCAR │   │   │       ├── KPOINTS │   │   │       ├── OUTCAR │   │   │       └── POSCAR │   │   ├── sl_oho │   │   │   └── output │   │   │       ├── CONTCAR │   │   │       ├── INCAR │   │   │       ├── KPOINTS │   │   │       ├── OUTCAR │   │   │       └── POSCAR │   │   └── sl_oo │   │       └── output │   │           ├── CONTCAR │   │           ├── INCAR │   │           ├── KPOINTS │   │           ├── OUTCAR │   │           └── POSCAR │   └── trigonal │       ├── 1x1_clcl │       │   └── output │       │       ├── CONTCAR │       │       ├── INCAR │       │       ├── KPOINTS │       │       ├── OUTCAR │       │       └── POSCAR │       ├── 1x1_ff │       │   └── output │       │       ├── CONTCAR │       │       ├── INCAR │       │       ├── KPOINTS │       │       ├── OUTCAR │       │       └── POSCAR │       ├── 1x1_fho │       │   └── output │       │       ├── CONTCAR │       │       ├── INCAR │       │       ├── KPOINTS │       │       ├── OUTCAR │       │       └── POSCAR │       ├── 1x1_fo │       │   └── output │       │       ├── CONTCAR │       │       ├── INCAR │       │       ├── KPOINTS │       │       ├── OUTCAR │       │       └── POSCAR │       ├── 1x1_ohho │       │   └── output │       │       ├── CONTCAR │       │       ├── INCAR │       │       ├── KPOINTS │       │       ├── OUTCAR │       │       └── POSCAR │       ├── 1x1_oho │       │   └── output │       │       ├── CONTCAR │       │       ├── INCAR │       │       ├── KPOINTS │       │       ├── OUTCAR │       │       └── POSCAR │       └── 1x1_oo │           └── output │               ├── CONTCAR │               ├── INCAR │               ├── KPOINTS │               ├── OUTCAR │               └── POSCAR ├── xrd_ti3c2t2 │   ├── octahedral │   │   ├── 1x1_ff │   │   │   └── output │   │   │       ├── CONTCAR │   │   │       ├── INCAR │   │   │       ├── KPOINTS │   │   │       ├── OUTCAR │   │   │       └── POSCAR │   │   ├── 1x1_oo │   │   │   └── output │   │   │       ├── CONTCAR │   │   │       ├── INCAR │   │   │       ├── KPOINTS │   │   │       ├── OUTCAR │   │   │       └── POSCAR │   │   ├── mixed1 │   │   │   └── output │   │   │       ├── CONTCAR │   │   │       ├── INCAR │   │   │       ├── KPOINTS │   │   │       ├── OUTCAR │   │   │       └── POSCAR │   │   ├── mixed2 │   │   │   └── output │   │   │       ├── CONTCAR │   │   │       ├── INCAR │   │   │       ├── KPOINTS │   │   │       ├── OUTCAR │   │   │       └── POSCAR │   │   └── mixed3 │   │       └── output │   │           ├── CONTCAR │   │           ├── INCAR │   │           ├── KPOINTS │   │           ├── OUTCAR │   │           └── POSCAR │   └── trigonal │       ├── 1x1_ff │       │   └── output │       │       ├── CONTCAR │       │       ├── INCAR │       │       ├── KPOINTS │       │       ├── OUTCAR │       │       └── POSCAR │       ├── 1x1_oo │       │   └── output │       │       ├── CONTCAR │       │       ├── INCAR │       │       ├── KPOINTS │       │       ├── OUTCAR │       │       └── POSCAR │       ├── mixed1 │       │   └── output │       │       ├── CONTCAR │       │       ├── INCAR │       │       ├── KPOINTS │       │       ├── OUTCAR │       │       └── POSCAR │       ├── mixed2 │       │   └── output │       │       ├── CONTCAR │       │       ├── INCAR │       │       ├── KPOINTS │       │       ├── OUTCAR │       │       └── POSCAR │       └── mixed3 │           └── output │               ├── CONTCAR │               ├── INCAR │               ├── KPOINTS │               ├── OUTCAR │               └── POSCAR └── zr3c2t2     ├── octahedral     │   ├── 1x1_clcl     │   │   └── output     │   │       ├── CONTCAR     │   │       ├── INCAR     │   │       ├── KPOINTS     │   │       ├── OUTCAR     │   │       └── POSCAR     │   ├── 1x1_ff     │   │   └── output     │   │       ├── CONTCAR     │   │       ├── INCAR     │   │       ├── KPOINTS     │   │       ├── OUTCAR     │   │       └── POSCAR     │   ├── 1x1_fho     │   │   └── output     │   │       ├── CONTCAR     │   │       ├── INCAR     │   │       ├── KPOINTS     │   │       ├── OUTCAR     │   │       └── POSCAR     │   ├── 1x1_fo     │   │   └── output     │   │       ├── CONTCAR     │   │       ├── INCAR     │   │       ├── KPOINTS     │   │       ├── OUTCAR     │   │       └── POSCAR     │   ├── 1x1_ohho     │   │   └── output     │   │       ├── CONTCAR     │   │       ├── INCAR     │   │       ├── KPOINTS     │   │       ├── OUTCAR     │   │       └── POSCAR     │   ├── 1x1_oho     │   │   └── output     │   │       ├── CONTCAR     │   │       ├── INCAR     │   │       ├── KPOINTS     │   │       ├── OUTCAR     │   │       └── POSCAR     │   └── 1x1_oo     │       └── output     │           ├── CONTCAR     │           ├── INCAR     │           ├── KPOINTS     │           ├── OUTCAR     │           └── POSCAR     ├── singlelayer     │   ├── sl_clcl     │   │   └── output     │   │       ├── CONTCAR     │   │       ├── INCAR     │   │       ├── KPOINTS     │   │       ├── OUTCAR     │   │       └── POSCAR     │   ├── sl_ff     │   │   └── output     │   │       ├── CONTCAR     │   │       ├── INCAR     │   │       ├── KPOINTS     │   │       ├── OUTCAR     │   │       └── POSCAR     │   ├── sl_fho     │   │   └── output     │   │       ├── CONTCAR     │   │       ├── INCAR     │   │       ├── KPOINTS     │   │       ├── OUTCAR     │   │       └── POSCAR     │   ├── sl_fo     │   │   └── output     │   │       ├── CONTCAR     │   │       ├── INCAR     │   │       ├── KPOINTS     │   │       ├── OUTCAR     │   │       └── POSCAR     │   ├── sl_ohho     │   │   └── output     │   │       ├── CONTCAR     │   │       ├── INCAR     │   │       ├── KPOINTS     │   │       ├── OUTCAR     │   │       └── POSCAR     │   ├── sl_oho     │   │   └── output     │   │       ├── CONTCAR     │   │       ├── INCAR     │   │       ├── KPOINTS     │   │       ├── OUTCAR     │   │       └── POSCAR     │   └── sl_oo     │       └── output     │           ├── CONTCAR     │           ├── INCAR     │           ├── KPOINTS     │           ├── OUTCAR     │           └── POSCAR     └── trigonal         ├── 1x1_clcl         │   └── output         │       ├── CONTCAR         │       ├── INCAR         │       ├── KPOINTS         │       ├── OUTCAR         │       └── POSCAR         ├── 1x1_ff         │   └── output         │       ├── CONTCAR         │       ├── INCAR         │       ├── KPOINTS         │       ├── OUTCAR         │       └── POSCAR         ├── 1x1_fho         │   └── output         │       ├── CONTCAR         │       ├── INCAR         │       ├── KPOINTS         │       ├── OUTCAR         │       └── POSCAR         ├── 1x1_fo         │   └── output         │       ├── CONTCAR         │       ├── INCAR         │       ├── KPOINTS         │       ├── OUTCAR         │       └── POSCAR         ├── 1x1_ohho         │   └── output         │       ├── CONTCAR         │       ├── INCAR         │       ├── KPOINTS         │       ├── OUTCAR         │       └── POSCAR         ├── 1x1_oho         │   └── output         │       ├── CONTCAR         │       ├── INCAR         │       ├── KPOINTS         │       ├── OUTCAR         │       └── POSCAR         └── 1x1_oo             └── output                 ├── CONTCAR                 ├── INCAR                 ├── KPOINTS                 ├── OUTCAR                 └── POSCAR

opencc-by-4.0Aug 2021View details →

dryad36/100

Temporal stability in species richness but reordering in species abundances within avian assemblages of a Tropical Andes conservation hot spot

As the pace of environmental change increases, there is an urgent need for quantitative data revealing the temporal dynamics of local communities in tropical areas. Here we quantify the stability of avian assemblages in the highly threatened, but poorly studied, Andean biodiversity hot spot. We evaluated the temporal variation in species richness and community composition of local bird assemblages in three habitat types (native forest, introduced forest, native shrub) using a unique, relatively long-term data series from Cajas National Park and Mazán Reserve in the Southern Andes of Ecuador. We sampled birds with mist nets using a standardized protocol over 11 years, from 2006 to 2016. Species richness remained stable over time across habitats, but community composition changed in the native forest. In particular, we observed taxonomic reordering in the native forest, in which the evenness in the distribution of abundances of taxa decreased over time. This finding is consistent with other studies where species richness remained constant over time while community composition changed. Our study highlights the value of long-term studies in the tropical Andes as we show that species composition of birds in a montane forest is changing, consistent with global trends in biodiversity change.

opencc-zeroSep 2021View details →

zenodo36/100

Objective evaluation of Nintendo Wii Fit plus balance program training on postural stability in Multiple Sclerosis patients

The use of the Nintendo Wii system has become a common tool for balance rehabilitation in patients with multiple sclerosis, but few studies verified the effectiveness of such an approach using quantitative measures of postural control. We aimed to evaluate the impact of rehabilitation treatment using the Nintendo Wii Fit Plus balance program on objective stabilometric parameters in multiple sclerosis patients. We enrolled 36 multiple sclerosis patients, with mild-moderate disability, referring to the multiple sclerosis Centre of the University of Catania from September 2013 to June 2014. Twenty participants underwent 20 individual sessions of balance exercise using the Nintendo Wii Fit Plus. They were assessed at baseline (T0) and at the end of rehabilitation program (T1) by Neurocom Balance Manager. Functional independence measure, Barthel index, and Berg balance scale were also administered. At T1, we found a significant improvement in total path length-open eyes, sway area-open eyes, and mean sway velocity-open eyes. Patients showed significant improvement in functional independence measure motor score, Barthel index, and in Berg balance scale. No significant differences between T0 and T1 in closed eyes trials were found. A significant correlation between delta values between T0 and T1 of sway area-open eyes and the Berg balance scale (r = -0.76; P < 0.0001) was found. This study confirmed that balance rehabilitation training performed using the Nintendo Wii with balance board significantly reduced some postural sway parameters in multiple sclerosis patients. It could be a good support to standard rehabilitation program in multiple sclerosis patients.

opencc-by-4.0Sep 2020View details →

dryad36/100

Genetic differences in the temporal and environmental stability of transgenerational environmental effects

Environments influence the expression of phenotypes of individuals, their progeny, and even their grandprogeny. The duration of environmental effects and how they are modified by subsequent environments are predicted to be targets of natural selection in variable environments. However, little is known about the genetic basis of the temporal persistence of environmental effects and their stability of expression across subsequent environments, or even the extent to which natural genotypes differ in these attributes of environmental effects. We factorially manipulated the thermal environment experienced in three successive generations, to quantify the temporal persistence and environmental stability of temperature effects in contrasting genotypes of Arabidopsis thaliana. We found that genotypes differed in the manner in which environmental effects dissipated across successive generations, the manner in which responses to ancestral environments were stably expressed in present environments, the manner in which ancestral environments altered responses to present environments, and in the manner in which ancestral environments altered fitness in present conditions. Genetic variation exists in nature for these trait-specific environmental responses, suggesting that the temporal persistence and stability of environmental effects in variable environments have the potential to evolve in response to natural selection imposed by different environments and sequences of environments.

opencc-zeroSep 2021View details →

zenodo36/100

Database Van der Meer (1988)-Stability graphs

The Excel database with figures is the basis of the figures in: Van der Meer, J.W. (2021). Rock Armour Slope Stability under Wave Attack: the Van der Meer Formula revisited. Journal of Coastal and Hydraulic Structures, JCHS. Researchers may use the figures to compare with their own results on rock slope stability under wave attack.

opencc-by-4.0Oct 2021View details →

dryad36/100

Datasets for: Primary production and habitat stability organize marine communities

Aim: The emergence of pattern in the natural world can carry important messages about underlying processes. For example, collections of broadly similar terrestrial ecosystems have historically been categorized as biomes – groupings of systems which sort along energetic and structural process axes. In marine systems however, a similar classification of biomes has not emerged. The aim here is to develop an effective classification scheme for marine biomes and communities. Approach: Candidate predictor variables that could explain pattern and process in differentiating marine communities, such as light, nutrients, depth, etc., were collected from the existing literature with a systematic review. The candidate predictors were then evaluated in an inductive process, allowing community level observations to demonstrate patterns across marine biomes. Marine biomes and communities were identified a priori, and emergent patterns were evaluated quantitatively, via Principal Component ordination based on the vectors of explanatory predictors, and qualitatively via mapping. Conclusions: Gross primary production and substrate mobility not only effectively sort marine biomes, but also work on finer scales discriminating communities within biomes. As a result, these predictors were more effective in classifying marine communities than other scales, such as available light and nutrients. The richness of this classification is also demonstrated in revealing other patterns, such as the distribution of human impacts. The effectiveness of this mapping provides support for, but is not a test of, the hypothesis that primary production and substrate mobility are important underlying processes that interact to structure marine ecosystems.

opencc-zeroOct 2021View details →

zenodo36/100

Data supporting: Impacts of extreme climatic events on trophic network complexity and multidimensional stability

Data used to produce the results presented in the manuscript entitled "Impacts of extreme climatic events on trophic network complexity and multidimensional stability", published in the journal "Ecology". The data were obtained from an outdoor pond mesocosm experiment where freshwater communities were exposed to two different heatwave scenarios.

opencc-by-4.0Dec 2021View details →

dryad36/100

Belowground net primary productivity stability in response to a nitrogen addition gradient in an alpine meadow

1.Temporal stability of ecosystem productivity is important for providing reliable ecosystem services under global changes. Great efforts have been made to explore the response of aboveground net primary productivity (ANPP) stability to nitrogen (N) enrichment, yet how it affects belowground net primary productivity (BNPP) stability remains elusive, which hinders a comprehensive understanding of ecosystem stability from the view of a whole system. 2. Here, using a field manipulative experiment with six N addition rates (0, 2, 4, 8, 16, 32 g N m-2 year-1), we explored the response patterns and drivers of BNPP stability in the topsoil (0-20 cm) and subsoil (20-40 cm) in the alpine meadow. 3. The results showed that BNPP stability at both soil depths showed a unimodal response to increasing N addition rates. Specifically, for both the topsoil and subsoil, low-level N addition significantly promoted BNPP stability, while high doses of N addition had no significant impact on BNPP stability, suggesting that current low level of N deposition likely benefits the stable provision of belowground functioning. Furthermore, dominant species stability and species richness contributed most to the changes in BNPP stability in the topsoil, whereas only dominant species stability was the dominant driver of BNPP stability in the subsoil. 4. This study is among the first to illuminate the main mechanisms underlying the responses of BNPP stability to N enrichment at various soil depths, which will advance our current understanding of N addition effects on belowground processes and benefit the sustainable provision of ecosystem functioning in the context of atmospheric N deposition.

opencc-zeroNov 2022View details →

zenodo36/100

Supporting dataset for the publication "The Crucial Role of Solvation Forces in the Steric Stabilization of Nanoplatelets"

Here, we provide an example of our umbrella sampling simulations (35.6 nm²×1.5 nm, 4 ligand beads, 250k solvent molecules), the input and output data of our WHAM calculations, free energy curves, and simulation data from the comparison of the MARTINI force field to the TraPPE-UA force field. Additional, we provide a modified file of the HOOBAS molecular builder. This file includes the "platelet" class we use to create nonoplatelets in our simulations.

opencc-by-4.0Jun 2022View details →

zenodo36/100

Code and data for manuscript: Is phase-dependent stability related to phase-dependent gait robustness?

Code and code data for manuscript: Is phase-dependent stability related to phase-dependent gait robustness?

opencc-by-4.0Dec 2022View details →

dryad36/100

Data for: Unprecedented shift in Canadian High Arctic polar bear food web unsettles four millennia of stability

Stable carbon (δ13C) and nitrogen (δ15N) isotope analysis was conducted on modern and archaeological polar bear bone collagen from the Canadian Arctic Archipelago to investigate potential changes in polar bear foraging ecology over four millennia. Polar bear δ13C values showed a significant decline in the modern samples relative to all archaeological time-bins, indicating a disruption in the sources of production that support the food web, occurring after the Industrial Revolution. The trophic structure, indicated through δ15N, remained unaltered throughout all time periods. The lower δ13C observed in the modern samples indicates a change in the relative importance of pelagic (supported by open-water phytoplankton) over sympagic (supported by sea ice-associated algae) primary production. The consistency in polar bear δ13C through the late Holocene includes climatic shifts such as the Medieval Warm Period (MWP, A.D. 950–1250) and the early stages of the Little Ice Age (LIA, A.D. 1300–1850). These findings suggest that polar bears inhabit a food web that is more pelagic and less sympagic today than it was through the Late Holocene. We suggest that modern, anthropogenic warming has already affected food web structure in the Canadian Arctic Archipelago when modern data are contextualized with a deep time perspective.

opencc-zeroDec 2022View details →

zenodo36/100

Functional stability of vegetation following biocontrol of an invasive riparian shrub

Understanding plant community response to environmental change is a crucial aspect of biological conservation and restoration, but species-based approaches are limited in that they do not reveal the underlying mechanisms driving vegetation dynamics. An understanding of trait-environment relationships is particularly important in the case of invasive species which may alter abiotic conditions and available resources. This study is the first to measure the functional response of riparian plant communities to biocontrol of an invasive species. We focused on an invasive shrub Tamarix (saltcedar) that is defoliated by a beetle that was released by the US Department of Agriculture along the Upper Colorado River (southwestern United States). We calculated community weighted means and functional dispersion of individual traits, multivariate functional dispersion and species diversity. We used linear mixed effect models (LME) to compare these metrics at paired vegetation patches dominated and not dominated by Tamarix during cycles of defoliation and refoliation over eight years. We found that community-weighted average trait values, species diversity and functional dispersion changed little in response to defoliation, and instead seemed to be responding to fluctuations in yearly precipitation. Average height and seed weight were greater in Tamarix-dominated patches relative to control patches. Functional dispersion followed a similar trajectory to species diversity, but was a more sensitive indicator of plant community change. We showed that riparian vegetation can be resilient to Tamarix biocontrol, and that defoliation might not necessarily always lead to substantial changes in ecosystem function.

opencc-by-4.0Jan 2023View details →

Find research datasets worth reusing

Dataset results

Figure data for the manuscript "SI-traceable frequency dissemination at 1572.06 nm in a stabilized fiber network with ring topology"

The results of the in vitro assay of the EHEC PpdD type IVa pilus stability

Data from: Modulation of yaw stability with an unstable rigid body and a stabilising caudal fin in the yellow boxfish (Ostracion cubicus)

Drivers of change and stability in the gut microbiota of an omnivorous avian migrant exposed to artificial food supplementation

Modelled gas hydrate stability zone extents for Svalbard's fjord and near-shore settings

Dataset: Stability of hemicarbonate under cement paste-like conditions

The validation of new phase-dependent gait stability measures: a modelling approach

Long-term stability of cortical ensembles

Stacking Sequence, Interlayer Bonding, Termination Group Stability and Li/Na/Mg diffusion in MXenes

Temporal stability in species richness but reordering in species abundances within avian assemblages of a Tropical Andes conservation hot spot

Objective evaluation of Nintendo Wii Fit plus balance program training on postural stability in Multiple Sclerosis patients

Genetic differences in the temporal and environmental stability of transgenerational environmental effects

Database Van der Meer (1988)-Stability graphs

Datasets for: Primary production and habitat stability organize marine communities

Data supporting: Impacts of extreme climatic events on trophic network complexity and multidimensional stability

Belowground net primary productivity stability in response to a nitrogen addition gradient in an alpine meadow

Supporting dataset for the publication "The Crucial Role of Solvation Forces in the Steric Stabilization of Nanoplatelets"

Code and data for manuscript: Is phase-dependent stability related to phase-dependent gait robustness?

Data for: Unprecedented shift in Canadian High Arctic polar bear food web unsettles four millennia of stability

Functional stability of vegetation following biocontrol of an invasive riparian shrub

Understand access before you commit

Allen Brain Atlas

Annotated Behaviour and Observability Dataset (ABODe)

DANDI Archive for NWB datasets

International Brain Laboratory public data

OpenNeuro