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ShareScore release 0.9.0
Dataset results
448 results for “analogy”
The DNA-binding protein HTa from Thermoplasma acidophilum is an archaeal histone analog (Mnase-seq and EMSA-seq)
GEO Series GSE138576. Escherichia coli; Thermoplasma acidophilum; synthetic construct. 12 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
Transcriptome map of nascent RNA production alterations upon CDK9 and analog senstiveCDK12 and/or CDK13 inhibition (TT-Seq)
GEO Series GSE141367. Drosophila melanogaster; Homo sapiens. 11 samples. Type: Expression profiling by high throughput sequencing; Other.
Post-secretory synthesis of a natural analog of iron-gall ink in the black nectar of Melianthus spp.
GEO Series GSE221730. Melianthus elongatus. 11 samples. Type: Expression profiling by high throughput sequencing.
Nuclear pore complex evolution: A trypanosome Mlp analog functions in chromosomal segregation but lacks transcriptional barrier activity
GEO Series GSE56436. Trypanosoma brucei. 3 samples. Type: Expression profiling by high throughput sequencing.
The DNA-binding protein HTa from Thermoplasma acidophilum is an archaeal histone analog
GEO Series GSE127728. Escherichia coli; synthetic construct; Thermoplasma acidophilum. 51 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Identification of Molecular Pathways Affected by Pterostilbene, a Natural Dimethylether Analog of Resveratrol
GEO Series GSE10554. Saccharomyces cerevisiae. 6 samples. Type: Expression profiling by array.
Pseudomonas aeruginosa PA14, mvfR and anthranilic acid analogs
GEO Series GSE17111. Pseudomonas aeruginosa. 10 samples. Type: Expression profiling by array.
Data from the manuscript: Machine learning reveals structural characteristics of stereochemistry-specific interdigitation of synthetic monomycoloyl glycerol analogs
<h2>Four membrane configurations:</h2> <p>1. single = single bilayer (512 MMG molecules and 25600 water molecule) <br>2. db_large = large double bilayer (1024 MMG molecules and 51200 water molecules)<br>3. id_small = interdigitated double bilayer (256 MMG molecules and 12800 water molecules)<br>4. db_small = small double bilayer (256 MMG molecules and 12800 water molecules)</p> <p>Each membrane configuration has 2 different MMG analogs:</p> <p><br>1. MMG1 = MMG-1, 1:1 racemic mixture of stereoisomers with (2R,3S)/(2S,3R) configurations<br>2. MMG6 = MMG-6, 1:1 racemic mixture of stereoisomers with (2R,3R)/(2S,3S) configurations</p> <h2>File names:</h2> <p><br>Each trajectory folder contains starting structures, input structure files, trajectory, energy file and system topology file.<br>Additionally, the .mdp files and topologies are located in their own folders.</p> <p>- start.gro = starting structure before energy minimization**<br>- eq.gro = input structure file for production<br>- eq.cpt = equilibration checkpoint file<br>- run.gro = final frame structure file<br>- run.cpt = production checkpoint file<br>- run.tpr = production tpr file <br>- run.xtc = production trajectory file, final 500 ns<br>- run.edr = production energy file, final 500 ns</p> <p>the <em>db_large</em> system is built with equilibrated <em>db_small</em> system, hence the starting structure is before the equilibration.</p> <h2>MDP-files:</h2> <p><br>Molecular dynamics parameter files can be found in their own folder (05_mdps/). Files for energy minimization,<br>equilibration and production run are provided.</p> <p>- em1_charmm36.mdp = 1st energy minimization (for all systems)<br>- em_charmm36.mdp = 2nd energy minimization (for all systems)<br>- eq1_noposres_charmm36.mdp = equilibration without position restraints (for single)<br>- eq1_posresin_charmm36.mdp = equilibration with O1 atoms constrained in Z-direction (for db_large, id_small, db_small)<br>- production_charmm36.mdp = production run (for all systems)</p> <h2>Topologies and position restraint files:</h2> <p><br>System topologies for each MMG analog can be found in their own folders (06_top/MMG1/, 06_top/MMG6/). <br>Molecular topologies, forcefield parameters and position restraint files can be found from their respective folders (06_top/MMG1/topol/, 06_top/MMG6/topol/).</p> <h3>MMG-1:</h3> <p><br>- db_large-MMG1.top = MMG-1 large double-bilayer system<br>- db_small-MMG1.top = MMG-1 small systems: interdigitated and non-interdigitated double bilayers <br>- single-MMG1.top = MMG-1 single bilayer system<br>- forcefield.itp = force field parameters<br>- TIP3_CHARMM36.itp = water model<br>- MMG1_2R3S_outer.itp = outer leaflet 2R3S MMG-1 <br>- MMG1_2S3R_outer.itp = outer leaflet 2S3R MMG-1 <br>- MMG1_2R3S_inner.itp = inner leaflet 2R3S MMG-1<br>- MMG1_2S3R_inner.itp = inner leaflet 2S3R MMG-1<br>- posres_MMG1_tail_z.itp = position restraints on MMG tails in z-direction<br>- posres_MMG1_O1_z.itp = position restraints on MMG headgroup O1 atom in z-direction</p> <h3>MMG-6:</h3> <p><br>- db_large-MMG6.top = MMG-6 large double-bilayer system<br>- db_small-MMG6.top = MMG-6 small systems: interdigitated and non-interdigitated double bilayers<br>- single-MMG6.top = MMG-6 single bilayer system<br>- forcefield.itp = force field parameters<br>- TIP3_CHARMM36.itp = water model<br>- MMG6_2S3S_outer.itp = outer leaflet 2S3S MMG-6 <br>- MMG6_2R3R_outer.itp = outer leaflet 2R3R MMG-6<br>- MMG6_2S3S_inner.itp = inner leaflet 2S3S MMG-6<br>- MMG6_2R3R_inner.itp = inner leaflet 2R3R MMG-6 <br>- posres_MMG6_tail_z_2R3R.itp = position restraints on tails in z-direction <br>- posres_MMG6_tail_z_2S3S.itp = position restraints on tails in z-direction<br>- posres_MMG6_O1_z.itp = position restraints on MMG headgroup O1 atom in z-direction</p>
Digitale Analogie trifft analoge Digitalie / Digital Analogy Meets Analog Digitaly
<u>Source</u>: Flickr <br><u>4DCity URL</u>: <a href="https://4dcity.org/imgupload/1662285496.5362.jpg">https://4dcity.org/imgupload/1662285496.5362.jpg</a> <br><u>Original Image URL</u>: <a href="https://live.staticflickr.com/65535/52325664022_3e9b0396b4_m.jpg">https://live.staticflickr.com/65535/52325664022_3e9b0396b4_m.jpg</a> <br><br><u>Image-Metadata:</u><br>Filename: 1662285496.5362.jpg<br>Image Dimensions: 240x171<br>Megapixels: 0.04 MP<br>Filesize: 22.34 KB<br><br>ExifOffset: 26
A Study in Chronic Hepatitis B e-Antigen Negative Participants After Discontinuation of Nucleos(t)Ide Analog (NA) Treatment
ClinicalTrials.gov study NCT05550519. IPD Sharing: YES. Countries: 0. Publications: 0.
Safety Study of an Oral Vitamin D Analog in Postmenopausal Women
ClinicalTrials.gov study NCT01969656. IPD Sharing: Not stated. Countries: 0. Publications: 0.
Cri Analog PG1 Effectiveness and Safety in Covid-19
ClinicalTrials.gov study NCT04536363. IPD Sharing: Not stated. Countries: 0. Publications: 0.
Phase II Pilot Study of Octreotide, a Somatostatin Octapeptide Analog, for Gastrointestinal Hemorrhage in Hormone-Refractory Hereditary Hemorrhagic Telangiectasia and Senile Ectasia
ClinicalTrials.gov study NCT00004327. IPD Sharing: Not stated. Countries: 0. Publications: 0.
Switch From U-100 Insulin Analog to U-500 Regular Insulin in Pumps for Type 2 Diabetes
ClinicalTrials.gov study NCT04371497. IPD Sharing: NO. Countries: 0. Publications: 0.
The COMACS Study: A Comparison of Methylphenidates in an Analog Classroom Setting
ClinicalTrials.gov study NCT00381758. IPD Sharing: Not stated. Countries: 0. Publications: 0.
DRB-PRO-Seq for measuring Pol II transcriptional elongation rate alterations upon inhibition of analog sensitive CDK12 and/or CDK13
GEO Series GSE141373. Homo sapiens. 11 samples. Type: Other.
The zingerone analog, acetyl zingerone, bolsters matrisome synthesis, inhibits MMPs, and represses IL-17A target gene expression [Experiment 1]
GEO Series GSE133338. Homo sapiens. 6 samples. Type: Expression profiling by array.
A Dual Molecular Analog Tuner for Dissecting Mammalian Protein Function
GEO Series GSE74457. Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing.
Molecular imaging of lymphoid organs and immune activation using PET with a new 18F-labeled 2’-deoxycytidine analog
GEO Series GSE9997. Mus musculus. 2 samples. Type: Expression profiling by array.
Nucleotide Excision Repair Removes Thymidine Analog 5-Ethynyl-2’-deoxyuridine From the Human Genome
GEO Series GSE202784. Homo sapiens. 9 samples. Type: Other.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.