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1,751 results for “molecular phylogenetics”
Fig. 10 in Identifying PCR primers to facilitate molecular phylogenetics in Caddisflies (Trichoptera)
Fig. 10. Results of maximum likelihood analysis in PAUP* (Swofford, 2002) using sequences from all 8 species. Bootstrap values are labeled for each node.
Figs 1–9 in Identifying PCR primers to facilitate molecular phylogenetics in Caddisflies (Trichoptera)
Figs 1–9. Results of maximum likelihood analysis in PAUP* (Swofford, 2002). 1. 16s rRNA. 2. 18s rRNA. 3. CAD. 4. COI. 5. COII. 6. EF-1. 7. IDH. 8. POL-II. 9. RPS2. All trees were rooted with A. deflata except for RPS2 for which no A. deflata sequence was
Fig. 3 in Expanded morphological definition and molecular phylogenetic position of the Tam Dao mountain stream keelback Opisthotropis tamdaoensis (Squamata: Natricidae) from Vietnam
Fig. 3. Drawings showing the head scalation in Opisthotropis tamdaoensis. (A) Male holotype after Ziegler et al. (2008), with the additional scale below the eye earmarked. (B) Female IEBR A.1016.33. (C) Male ZFMK 100000) compared to O. lateralis (D: Male IEBR 3645). Supralabials are numbered to show the differences between the new series of O. tamdaoensis (B, C) and O. lateralis (D). Drawings: T. Ziegler
Fig. 1 in Expanded morphological definition and molecular phylogenetic position of the Tam Dao mountain stream keelback Opisthotropis tamdaoensis (Squamata: Natricidae) from Vietnam
Fig. 1. Head portraits of the new series of Opisthotropis tamdaoensis in preserved state, showing the head scalation and the insertion of the black lateral stripe in the midst of the dark dorsal colouration. (A) Female IEBR A.2016.33. (B) Male ZFMK 100000. (C) Female IEBR A.2016.32. (D) Female MHNG 2767.60. Photos: T. Ziegler
Fig. 5. Combined ITSand trnT-F phylogenybasedonmaximum parsimonyand Bayesian inference. Shadedsectionof thetree highlightsspecies with x in Canary grasses (Phalaris, Poaceae): Molecular phylogenetics, polyploidy and floret evolution
Fig. 5. Combined ITSand trnT-F phylogenybasedonmaximum parsimonyand Bayesian inference. Shadedsectionof thetree highlightsspecies with x = 6, and names shown in bold denote polyploid species. * = nodes collapsed in the strictconsensus maximum parsimony tree. • = unknown chromosome number. Floret types follow the structure defined in Fig. 2. A = annual and P = perennial habit.
Fig. 4. trnT-F in Canary grasses (Phalaris, Poaceae): Molecular phylogenetics, polyploidy and floret evolution
Fig. 4. trnT-F phylogram generated from Bayesian inference. Parsimony bootstrap results are above branches and Bayesian posterior probabilities are below. Shaded section of the tree highlights species with x = 6, and names shown in bold denote polyploid species. * = clade collapsed in the strict consensus maximum parsimony tree. • = unknown chromosome number. Floret types follow Fig. 2. A = annual and P = perennial habit.
Fig. 2 in Canary grasses (Phalaris, Poaceae): Molecular phylogenetics, polyploidy and floret evolution
Fig. 2. Adiagrammatic illustrationof sixfloret typesrecognizablein speciesof Phalaris following Anderson (1961) and Baldini (1995). Notethe central fertile floret and the two lateral sterile lemmas that display successive reduction in size.
FIGURE 2. Optimal phylogenetic tree from Maximum Likelihood analyses for the nrITS1–5.8S–ITS2 in Morphology and molecular data of the species of Suillus (Suillaceae, Boletales) associated with Pinus sibirica at the European northeast of Russia
FIGURE 2. Optimal phylogenetic tree from Maximum Likelihood analyses for the nrITS1–5.8S–ITS2 Suillus data. Bootstrap values (BS ≥ 70%) is added to the left of a node as follows: nearest neighbour method / maximum likelihood method. Scale bar indicates expected changes per site. New sequences from the Komi Republic are marked with red blocks. The specimen GenBank accession numbers in parentheses follows the names.
FIGURE 3. Phylogenetic relationships among Indosasa triangulata and other 17 in Pleioblastus triangulata (Poaceae: Bambusoideae), a new combination for Indosasa triangulata based on morphological and molecular evidence
FIGURE 3. Phylogenetic relationships among Indosasa triangulata and other 17 species belonging to Arundinarieae derived from Maximum Likelihood and Bayesian analysis. Numbers on the nodes are bootstrap values from 1000 replicates and posterior probabilities after 6,000,000 generations.
Figure 4 in Integrative taxonomy: molecular phylogenetics of Polypedilum (Cerobregma) and revisited morphology of Yaethauma and Collartomyia (Diptera: Chironomidae) reveals synonymy and supports new classification
Figure 4. Polypedilum (Collartomyia) longiligulatum. Pupa. A, frontal apotome; B, thorax; C, thorax horn; D, abdomen; E, caudolateral comb of segment VIII. (Scale bars. A, E, 100 µm; B, 400 µm; C, 20 µm; D, 200 µm.)
Figure 3 in Integrative taxonomy: molecular phylogenetics of Polypedilum (Cerobregma) and revisited morphology of Yaethauma and Collartomyia (Diptera: Chironomidae) reveals synonymy and supports new classification
Figure 3. Polypedilum (Collartomyia) longiligulatum. Colour images. Male. A, habitus, dorsal; B, hypopygium, dorsal view (Gc bulb, gonocoxite bulb; Gs, gonostylus); C, habitus, lateral. Pupa: D, habitus, dorsal; E, cephalothorax, lateral; F, thoracic horn, lateral. (Scale bars: A, C, D, E 400 µm; B, F,100 µm.)
Figure 1 in Integrative taxonomy: molecular phylogenetics of Polypedilum (Cerobregma) and revisited morphology of Yaethauma and Collartomyia (Diptera: Chironomidae) reveals synonymy and supports new classification
Figure 1. Phylogenetic tree from Bayesian inference for selected Polypedilum and relatives (see Table 1) based on six concatenated gene markers. Posterior probabilities (PP) and bootstrap support (BS from ML analysis) are indicated above branches, only nodes with PP> 0.95 or BS> 75 are labelled.
Figure 2 in Integrative taxonomy: molecular phylogenetics of Polypedilum (Cerobregma) and revisited morphology of Yaethauma and Collartomyia (Diptera: Chironomidae) reveals synonymy and supports new classification
Figure 2. Parsimony analysis for selected subgenera and species groups of Polypedilum Kieffer, related genera and Phaenopsectra Kieffer as outgroup under implied weighting. Numbers above branch Bremer values, with unlabeled branches unstable (0/1) between analyses, below line Bootstrap values of> 51. For analysis settings, see text.
FIGURE 3 in Phylogenetic placement of a new Melanophilharmostes Paulian, 1968 pill scarab (Coleoptera: Hybosoridae: Ceratocanthinae) from Cameroon: molecular results decipher misleading morphology
FIGURE 3. Habitus of select sequenced specimens of Melanophilharmostes and Pseudopterorthochaetes, dorsal view; images are to scale. Note pilosity on pronota and elytra distinguishing both genera. Melanophilharmostes tuber Grebennikov, new species is immediately recognisable by possessing three unique characters: uneven pronotal surface, lateral elytral carina, and exceptionally deep microsculpture on the head, pronotum, and elytra.
FIGURE 1. Melanophilharmostes tuber Grebennikov, new species. A–E in Phylogenetic placement of a new Melanophilharmostes Paulian, 1968 pill scarab (Coleoptera: Hybosoridae: Ceratocanthinae) from Cameroon: molecular results decipher misleading morphology
FIGURE 1. Melanophilharmostes tuber Grebennikov, new species. A–E: habitus of the conglobate holotype, dorsal (A), anterior (B), left lateral (C), ventral (D), and posterior (E) views; F: habitat of paratype on Mt. Kupe; G: distribution of M. tuber.
FIGURE 4 in Phylogenetic placement of a new Melanophilharmostes Paulian, 1968 pill scarab (Coleoptera: Hybosoridae: Ceratocanthinae) from Cameroon: molecular results decipher misleading morphology
FIGURE 4. Habitus of select sequenced specimens of Melanophilharmostes and Pseudopterorthochaetes, lateral view; images are to scale.
FIGURE 4. Phylogenetic tree for 56 in A small, new gerbil-mouse Eligmodontia (Rodentia: Cricetidae) from dunes at the coasts and deserts of north-central Chile: molecular, chromosomic, and morphological analyses
FIGURE 4. Phylogenetic tree for 56 Eligmodontia sequences and two outgroups resulting from the maximum-likelihood analysis of 1140 bp of the cytochrome b gene. Model of sequence evolution was HKY+G+I. Numbers above branches show the percentage values from 500 bootstrap iterations, and Bayesian posterior probabilities (>50 values).
FIGURE 11 in The taxonomic identity of the monocle bream Scolopsis vosmeri species complex (Perciformes: Nemipteridae), with comments on molecular phylogenetic relationships within the genus Scolopsis
FIGURE 11. Posterior margin of preopercle. A: Scolopsis vosmeri, NTM S.14230-001, 140 mm SL, Sandakan. Sabah, Malaysia; B: Scolopsis japonica, WAM P.31312-002, 127.7 mm SL, Bintan Island, Indonesia; C: Scolopsis curite, NTM S.13160-013, 132.2 mm SL, Chilaw, Sri Lanka; arrow showing more rugose margin of latter. Photos by B.C. Russell.
FIGURE 12 in The taxonomic identity of the monocle bream Scolopsis vosmeri species complex (Perciformes: Nemipteridae), with comments on molecular phylogenetic relationships within the genus Scolopsis
FIGURE 12. Maximum likelihood tree for species of Scolopsis based on publicly available partial sequences of the mitochondrial cytochrome oxidase I (COI) gene plus COI sequences generated in this study. Branch labels are bootstrap support values in percent obtained from 1.000 replicated analyses. Bar indicates the average number of nucleotide substitutions.
FIGURE 10. Scolopsis curite. A in The taxonomic identity of the monocle bream Scolopsis vosmeri species complex (Perciformes: Nemipteridae), with comments on molecular phylogenetic relationships within the genus Scolopsis
FIGURE 10. Scolopsis curite. A: 'Kurite' of Russell (1803: pl. 106); B: Scolopsis kurite from Rüppell (1828: pl. 2, fig. 3); C: Neotype of Scolopsis curite, ZSI/ANRC M/23687, 122.3 mm SL, Puducherry, Tamil Nadu, India, photo by B.C. Russell.
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Allen Brain Atlas
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Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.