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4,276 results for “transcription factors”
Phylogenomic Analysis of R2R3 MYB Transcription Factors in Sorghum and their Role in Conditioning Biofuel Syndrome
GEO Series GSE148558. Sorghum bicolor. 4 samples. Type: Expression profiling by high throughput sequencing.
Identification of Transcription Factor ZK377.2::GFP Binding Regions in L3
GEO Series GSE44010. Caenorhabditis elegans. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Identification of Transcription Factor NHR-2::GFP Binding Regions in EMB
GEO Series GSE48725. Caenorhabditis elegans. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Transcription factors expressed in olfactory bulb local progenitor cells revealed by genome-wide transcriptome profiling
GEO Series GSE26406. Mus musculus. 9 samples. Type: Expression profiling by array.
Analysis of genes regulated by an Arabidopsis transcription factor, Dof3.2
GEO Series GSE58064. Arabidopsis thaliana. 4 samples. Type: Expression profiling by array.
The transcription factor EGR2 plays an important role in the expansion and function TCRα + CD4 - CD8 - double negative T cells in lpr lupus mice
GEO Series GSE306407. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
Identification of Transcription Factor EFL-1::GFP Binding Regions in Ab
GEO Series GSE48703. Caenorhabditis elegans. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
SOX7 and ETS factors regulate an endothelial transcriptional program during vascular development (DamID)
GEO Series GSE63645. Mus musculus. 5 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
The ets transcription factor ELF5 suppresses the estrogen sensitive phenotype and contributes to antiestrogen resistance in luminal breast cancer. [mouse]
GEO Series GSE30406. Mus musculus. 6 samples. Type: Expression profiling by array.
Transcriptional constraint of EWS/FLI by an ETS transcription factor promotes Ewing sarcoma growth [CUT&RUN]
GEO Series GSE211852. Homo sapiens. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Inference of tumor cell-specific transcription factor binding from cell-free DNA enables tumor subtype prediction and early detection of cancer
<p>Deregulation of transcription factors (TFs) is an important driver of tumorigenesis. We developed and validated a minimally invasive method for assessing TF activity based on cell-free DNA sequencing and nucleosome footprint analysis. We analyzed whole genome sequencing data for >1,000 cell-free DNA samples from cancer patients and healthy controls using a newly developed bioinformatics pipeline that infers accessibility of TF binding sites from cell-free DNA fragmentation patterns. We observed patient-specific as well as tumor-specific patterns, including accurate prediction of tumor subtypes in prostate cancer, with important clinical implications for the management of patients. Furthermore, we show that cell-free DNA TF profiling is capable of early detection of colorectal carcinomas. Our approach for mapping tumor-specific transcription factor binding <em>in vivo</em> based on blood samples makes a key part of the noncoding genome amenable to clinical analysis</p> <p>This dataset comprises genome-wide midpoint coverages across the early stage colon cancer cohort and non-cancer controls. For every TF and every sample, coverage values relative to the transcription factor binding site are specified ni tab-separated values (one file per sample, one line per TF)</p>
Underyling thesis data for : Adenovirus large E1B proteins regulate transcription through interaction with mammalian transcription factors
<p>These thesis-relevant files contain table-formatted data (ods files) of several different experimental setups, including RNA-seq based DEseq2-analysis results, ChIP-seq based diffreps, peak-calling and HOMER-based motif analysis results. The scripts used in the creation of this data, the underlying sequencing data or more specific data analysis can be obtained by contacting the author.</p>
The role of Aspergillus fumigatus SmiA transcription factor in the miltefosine resistance
GEO Series GSE178664. Aspergillus fumigatus. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Identification of Transcription Factor LSY-2::GFP Binding Regions in Embryo
GEO Series GSE48715. Caenorhabditis elegans. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Transcriptional profile at single cell level of Schistosoma mansoni following knocking down Krüppel-like factor 4 (klf4) [scRNA-Seq]
GEO Series GSE268036. Schistosoma mansoni. 2 samples. Type: Expression profiling by high throughput sequencing.
Identification of Transcription Factor R02D3.7::GFP Binding Regions in L4
GEO Series GSE48692. Caenorhabditis elegans. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Transcription factor binding in human embryonic stem cells
GEO Series GSE36578. Homo sapiens. 9 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Transcription factors PLT and chromatin regulators PRC2 and JMJ703 form nuclear condensates to maintain gene repression in bivalent domains controlling cell fate in rice root meristem
GEO Series GSE251804. Oryza sativa Japonica Group. 26 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
Differential gene expression in A. thaliana seedlings depending on the introduction of a point mutation in FIT (FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR) under iron deficient conditions
GEO Series GSE97401. Arabidopsis thaliana. 36 samples. Type: Expression profiling by array.
Toll-Like Receptor-Induced Nucleosome Remodeling Achieved by Broadly Acting NF-kB in Collaboration with Transcription Factors Conferring Selectivity [RNA-Seq]
GEO Series GSE235282. Mus musculus. 18 samples. Type: Expression profiling by high throughput sequencing.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.