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709
datasets available to search
ShareScore release 0.9.0
Dataset results
709 results for “Coverage”
Data from: Revisiting the ichthyodiversity of Java and Bali through DNA barcodes: taxonomic coverage, identification accuracy, cryptic diversity and identification of exotic species
Open the record for dataset details and reuse information.
Hepatitis B vaccination coverage and associated factors among personnel working in health facilities in Kumasi, Ghana
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Towards hepatitis B elimination in Ghana: Vaccination coverage and its predictors among informal sector workers in Kejetia, Kumasi, Ghana
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Sequences of Staudtia kamerunensis obtained through low coverage whole genome skimming
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Supplementary material 8 from: Garrido-Sanz L, Senar MÀ, Piñol J (2020) Estimation of the relative abundance of species in artificial mixtures of insects using low-coverage shotgun metagenomics. Metabarcoding and Metagenomics 4: e48281. https://doi.org/10.3897/mbmg.4.48281
: Data type: Excel table
Supplementary material 5 from: Garrido-Sanz L, Senar MÀ, Piñol J (2020) Estimation of the relative abundance of species in artificial mixtures of insects using low-coverage shotgun metagenomics. Metabarcoding and Metagenomics 4: e48281. https://doi.org/10.3897/mbmg.4.48281
: Data type: Excel table
Supplementary material 4 from: Garrido-Sanz L, Senar MÀ, Piñol J (2020) Estimation of the relative abundance of species in artificial mixtures of insects using low-coverage shotgun metagenomics. Metabarcoding and Metagenomics 4: e48281. https://doi.org/10.3897/mbmg.4.48281
: Data type: Excel table
Supplementary material 3 from: Garrido-Sanz L, Senar MÀ, Piñol J (2020) Estimation of the relative abundance of species in artificial mixtures of insects using low-coverage shotgun metagenomics. Metabarcoding and Metagenomics 4: e48281. https://doi.org/10.3897/mbmg.4.48281
: Data type: Excel table
Supplementary material 6 from: Garrido-Sanz L, Senar MÀ, Piñol J (2020) Estimation of the relative abundance of species in artificial mixtures of insects using low-coverage shotgun metagenomics. Metabarcoding and Metagenomics 4: e48281. https://doi.org/10.3897/mbmg.4.48281
: Data type: Excel table
Supplementary material 7 from: Garrido-Sanz L, Senar MÀ, Piñol J (2020) Estimation of the relative abundance of species in artificial mixtures of insects using low-coverage shotgun metagenomics. Metabarcoding and Metagenomics 4: e48281. https://doi.org/10.3897/mbmg.4.48281
: Data type: Excel table
Supplementary material 2 from: Garrido-Sanz L, Senar MÀ, Piñol J (2020) Estimation of the relative abundance of species in artificial mixtures of insects using low-coverage shotgun metagenomics. Metabarcoding and Metagenomics 4: e48281. https://doi.org/10.3897/mbmg.4.48281
: Data type: Excel table
Supplementary material 1 from: Garrido-Sanz L, Senar MÀ, Piñol J (2020) Estimation of the relative abundance of species in artificial mixtures of insects using low-coverage shotgun metagenomics. Metabarcoding and Metagenomics 4: e48281. https://doi.org/10.3897/mbmg.4.48281
: Data type: Boxplot
Coverage to Covid-19 articles in Altmetric.com and the confirmed cases of Covid-19 diseases from 01-01-2020 to 04-01-2020
<p>the data is related to the rate of coverage to articles published about Novel coronavirus (covid-19 ) in PubMed and the coverage to the articles collected from Altmetric.com</p>
Coverage and Deployment Analysis of Narrowband Internet of Things in the Wild - Dataset
<p>Coverage and Deployment Narrowband Internet of Things (NBIoT) measurements in Oslo and Rome.</p>
Satellite-derived long-term estimates of full-coverage PM1 concentrations across China based on a stacking decision tree model
<p>The open data uploaded by Rui Li</p>
Analysis of the Emerging Source Citation Index (coverage and impact) in social science and humanities (2005-2018)
<p>The information presented is supplementary material to the paper " <strong>Is the Emerging Source Citation Index an aid to assess the citation impact in social science and humanities? </strong> "</p>
Hippoglossus hippoglossus SNP data for coverage-based sex association
<p>Changes in the genetic mechanisms that control sexual determination have occurred independently across the tree of life, and with exceptional frequency in teleost fishes. To investigate the genomic changes underlying the evolution of sexual determination, we sequenced a chromosome-level genome, multi-tissue transcriptomes, and population genomic data for the Atlantic Halibut (<i>Hippoglossus hippoglossus</i>), which<i> </i>has an XY/XX sex determination mechanism and has recently diverged from the Pacific Halibut (<i>Hippoglossus stenolepis</i>), which has a ZZ/ZW system. We used frequency and coverage-based population genomic approaches to identify a putative sex-determining factor, <i>GSDF</i>. We characterized regions with elevated heterozygosity and linkage disequilibrium indicating suppression of recombination across a recently formed sex chromosome. We detected testis-specific expression of <i>GSDF</i>, the sequence for which was highly conserved across flatfish. Based on evidence from genome-wide association, coverage, linkage disequilibrium, testis and brain transcriptomes, and sequence conservation with other flatfish, we propose a mechanism for the recent evolution of an XY sex-determination mechanism in Atlantic Halibut. A loss of function of the ancestral sex-determining gene <i>DMRT1</i> in regulating the downstream gene <i>GSDF</i> likely enabled <i>GSDF, </i>or a proximal regulatory element, to become the primary sex-determining factor. Our results suggest changes to a small number of elements can have drastic repercussions for the genomic substrate available to sex-specific evolutionary forces, providing insight into how certain elements repeatedly evolve to control sex across taxa. Our chromosome-level assembly, multi-tissue transcriptomes, and population genomic data provide a valuable resource and understanding of the evolution of sexual systems in fishes.</p>
A 15-year full-coverage daily PM1 dataset across China based on a data-fusion model
<p>The long-term (2004-2018) full-coverage daily PM<sub>1</sub> dataset across China was developed based on a stacking decision tree model assimilating satellite data, meteorological variables, and other geographical covariates. The PM<sub>1</sub> dataset captured a strong prediction capability with a high cross-validation (CV) R<sup>2</sup> value (0.64), and the low root-mean-square error (RMSE: 18.60 μg/m<sup>3</sup>) and moderate absolute error (MAE: 11.96 μg/m<sup>3</sup>). The long-term PM<sub>1</sub> dataset obtained here provide a key scientific basis and data support for epidemiological research and air pollution mitigation.</p>
Data from: Low-coverage, whole-genome sequencing of Artocarpus camansi (Moraceae) for phylogenetic marker development and gene discovery
Premise of the study: We used moderately low-coverage (17×) whole-genome sequencing of Artocarpus camansi (Moraceae) to develop genomic resources for Artocarpus and Moraceae. Methods and Results: A de novo assembly of Illumina short reads (251,378,536 pairs, 2 × 100 bp) accounted for 93% of the predicted genome size. Predicted coding regions were used in a three-way orthology search with published genomes of Morus notabilis and Cannabis sativa. Phylogenetic markers for Moraceae were developed from 333 inferred single-copy exons. Ninety-eight putative MADS-box genes were identified. Analysis of all predicted coding regions resulted in preliminary annotation of 49,089 genes. An analysis of synonymous substitutions for pairs of orthologs (Ks analysis) in M. notabilis and A. camansi strongly suggested a lineage-specific whole-genome duplication in Artocarpus. Conclusions: This study substantially increases the genomic resources available for Artocarpus and Moraceae and demonstrates the value of low-coverage de novo assemblies for nonmodel organisms with moderately large genomes.
Data from: Assembly and comparative analysis of transposable elements from low coverage genomic sequence data in Asparagales
The research field of comparative genomics is moving from a focus on genes to a more holistic view including the repetitive complement. This study aimed to characterize relative proportions of the repetitive fraction of large, complex genomes in a non-model system. The monocotyledonous plant order Asparagales (onion, asparagus, agave) comprises some of the largest angiosperm genomes and represents variation in both genome size and structure (karyotype). Anonymous, low coverage, single-end Illumina data from eleven exemplar Asparagales taxa were assembled using a de novo method. Resulting contigs were annotated using a reference library of available monocot repetitive sequences. Mapping reads to contigs provided rough estimates of relative proportions of each type of transposon in the nuclear genome. The results were parsed into general repeat types and synthesized with genome size estimates and a phylogenetic context to describe the pattern of transposable element evolution among these lineages. The major finding is that while some lineages in Asparagales exhibit conservation in repeat proportions, there is generally wide variation in types and frequency of repeats. This approach is an appropriate first step in characterizing repeats in evolutionary lineages with a paucity of genomic resources.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.