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501 results for “Phylogenetic tree”
Supplementary material 2 from: Rajter Ľ, Dunthorn M (2021) Ciliate SSU-rDNA reference alignments and trees for phylogenetic placements of metabarcoding data. Metabarcoding and Metagenomics 5: e69602. https://doi.org/10.3897/mbmg.5.69602
File S2
Supplementary material 10 from: Rajter Ľ, Dunthorn M (2021) Ciliate SSU-rDNA reference alignments and trees for phylogenetic placements of metabarcoding data. Metabarcoding and Metagenomics 5: e69602. https://doi.org/10.3897/mbmg.5.69602
File S10
Supplementary material 6 from: Rajter Ľ, Dunthorn M (2021) Ciliate SSU-rDNA reference alignments and trees for phylogenetic placements of metabarcoding data. Metabarcoding and Metagenomics 5: e69602. https://doi.org/10.3897/mbmg.5.69602
File S6
Supplementary material 20 from: Rajter Ľ, Dunthorn M (2021) Ciliate SSU-rDNA reference alignments and trees for phylogenetic placements of metabarcoding data. Metabarcoding and Metagenomics 5: e69602. https://doi.org/10.3897/mbmg.5.69602
Table S1
Supplementary material 5 from: Rajter Ľ, Dunthorn M (2021) Ciliate SSU-rDNA reference alignments and trees for phylogenetic placements of metabarcoding data. Metabarcoding and Metagenomics 5: e69602. https://doi.org/10.3897/mbmg.5.69602
File S5
Supplementary material 14 from: Rajter Ľ, Dunthorn M (2021) Ciliate SSU-rDNA reference alignments and trees for phylogenetic placements of metabarcoding data. Metabarcoding and Metagenomics 5: e69602. https://doi.org/10.3897/mbmg.5.69602
File S14
Supplementary material 13 from: Rajter Ľ, Dunthorn M (2021) Ciliate SSU-rDNA reference alignments and trees for phylogenetic placements of metabarcoding data. Metabarcoding and Metagenomics 5: e69602. https://doi.org/10.3897/mbmg.5.69602
File S13
Supplementary material 12 from: Rajter Ľ, Dunthorn M (2021) Ciliate SSU-rDNA reference alignments and trees for phylogenetic placements of metabarcoding data. Metabarcoding and Metagenomics 5: e69602. https://doi.org/10.3897/mbmg.5.69602
File S12
Material for the blog post "Building phylogenetic trees with SKA"
<p>Metadata and sequences for 46 reassembled hybrid Nanopore+Illumina <em>Escherichia coli</em> assemblies from Snaith et al. "The highly diverse plasmid population found in <em>Escherichia coli</em> colonizing travellers to Laos and its role in antimicrobial resistance gene carriage" in Microbial Genomics (https://doi.org/10.1099/mgen.0.001000).<br> <br> Please cite the original publication if you use these in your study.</p>
Fig. 11. Strict consensus tree resulting from 42 in Born from rock: eight new species of Itauara Müller, 1888 (Trichoptera: Glossosomatidae) from southeastern Brazil, including phylogenetic and distributional comments on the genus
Fig. 11. Strict consensus tree resulting from 42 most parsimonious trees (length = 242 steps; consistency index = 0.4291; retention index = 0.6602) from an equally weighted parsimony analysis of Itauara Müller, 1888 based on 93 morphological characters (6 constant, 19 variable and parsimony uninformative) modified from the matrix of Robertson & Holzenthal (2013). Apomorphies for the clades are indicated by the characters, with its states between parentheses. Bootstrap values (> 50%) are indicated under branches within the Itauara clade.
Concatenated DNA matrix and BEAST tree used for phylogenetic, dating, biogeographic and diversification analyses of Caribbean Podocarpus
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Data from: Testing Phylogenetic Methods with Tree Congruence: Phylogenetic Analysis of Polymorphic Morphological Characters in Phrynosomatid Lizards
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Data from: Age-dependent and lineage-dependent speciation and extinction in the imbalance of phylogenetic trees
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Data from: How ecology and landscape dynamics shape phylogenetic trees
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Data from: Simple chained guide trees give poorer multiple sequence alignments than inferred trees in simulation and phylogenetic benchmarks
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Data from: Fine root morphology is phylogenetically structured but nitrogen is related to the plant economics spectrum in temperate trees
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Data from: An efficient independence sampler for updating branches in Bayesian Markov chain Monte Carlo sampling of phylogenetic trees
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Data from: The efficacy of consensus tree methods for summarising phylogenetic relationships from a posterior sample of trees estimated from morphological data
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Data from: Genome-scale phylogenetics: inferring the plant tree of life from 18,896 gene trees
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Data from: The local-clock permutation test: a simple test to compare rates of molecular evolution on phylogenetic trees
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ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.