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501 results for “phylogenetic taxonomy”
Supplementary material 6 from: Shi Y, Zeng Z, Wang J, Zhang S, Deng L, Wang A (2022) Three new species of Macrostomum (Platyhelminthes, Macrostomorpha) from China and Australia, with notes on taxonomy and phylogenetics. ZooKeys 1099: 1-28. https://doi.org/10.3897/zookeys.1099.72964
Figure S3
Supplementary material 4 from: Shi Y, Zeng Z, Wang J, Zhang S, Deng L, Wang A (2022) Three new species of Macrostomum (Platyhelminthes, Macrostomorpha) from China and Australia, with notes on taxonomy and phylogenetics. ZooKeys 1099: 1-28. https://doi.org/10.3897/zookeys.1099.72964
Figure S1
Supplementary material 7 from: Shi Y, Zeng Z, Wang J, Zhang S, Deng L, Wang A (2022) Three new species of Macrostomum (Platyhelminthes, Macrostomorpha) from China and Australia, with notes on taxonomy and phylogenetics. ZooKeys 1099: 1-28. https://doi.org/10.3897/zookeys.1099.72964
Figure S4
Supplementary material 3 from: Shi Y, Zeng Z, Wang J, Zhang S, Deng L, Wang A (2022) Three new species of Macrostomum (Platyhelminthes, Macrostomorpha) from China and Australia, with notes on taxonomy and phylogenetics. ZooKeys 1099: 1-28. https://doi.org/10.3897/zookeys.1099.72964
Table S3
Supplementary material 2 from: Shi Y, Zeng Z, Wang J, Zhang S, Deng L, Wang A (2022) Three new species of Macrostomum (Platyhelminthes, Macrostomorpha) from China and Australia, with notes on taxonomy and phylogenetics. ZooKeys 1099: 1-28. https://doi.org/10.3897/zookeys.1099.72964
Table S2
Figure 29 in The genus Symmela Erichson, 1835 (Coleoptera, Scarabaeidae, Sericini): taxonomy and phylogenetic analysis
Figure 29. Distribution map of the Symmela species.
Supplementary material 1 from: Fassou G, Korotkova N, Nersesyan A, Koch MA, Dimopoulos P, Borsch T (2022) Taxonomy of Dianthus (Caryophyllaceae) – overall phylogenetic relationships and assessment of species diversity based on a first comprehensive checklist of the genus. PhytoKeys 196: 91-214. https://doi.org/10.3897/phytokeys.196.77940
Appendix 1
Figure 1 in Taxonomy And Phylogenetics Of The Peromyscus Maniculatus Species Group
Figure 1. Map of the general distributions of species in the P. maniculatus group as discussed and recognized herein. Peomyscus sejugis is restricted to Isla Santa Cruz and Isla San Diego in the Gulf of California and is not figured. Numbers in parentheses refer to the DNA clades as designated by Dragoo et al. (2006), and cross hatching indicates distributional overlap of P. melanotis and P. labecula. The general distributions of species were determined by plotting the geographically marginal specimens reported in the following papers: Bowers et al. (1973), Allard and Greenbaum (1988), Hogan et al. (1993), Wike (1998), Zheng et al. (2003), Lucid and Cook (2004), Dragoo et al. (2006), Walker et al. (2006), Lucid and Cook (2007), Gering et al. (2009), Yang and Kenagy (2011), Domingues et al. (2012), Kalkvik et al. (2012), Natarajan et al. (2015), Greenbaum et al. (2017), Kingsley et al. (2017), Sawyer et al. (2017), and Kalkvik et al. (2018).
Supplementary material 3 from: Liebherr JK (2016) Cyphocoleus Chaudoir (Coleoptera, Carabidae, Odacanthini): descriptive taxonomy, phylogenetic relationships, and the Cenozoic history of New Caledonia. Deutsche Entomologische Zeitschrift 63(2): 211-270. https://doi.org/10.3897/dez.63.10241
Specimen records for previously described Cyphocoleus spp. :
Supplementary material 2 from: Liebherr JK (2016) Cyphocoleus Chaudoir (Coleoptera, Carabidae, Odacanthini): descriptive taxonomy, phylogenetic relationships, and the Cenozoic history of New Caledonia. Deutsche Entomologische Zeitschrift 63(2): 211-270. https://doi.org/10.3897/dez.63.10241
NONA format data file for cladistic analysis of Odacanthini :
Supplementary material 1 from: Liebherr JK (2016) Cyphocoleus Chaudoir (Coleoptera, Carabidae, Odacanthini): descriptive taxonomy, phylogenetic relationships, and the Cenozoic history of New Caledonia. Deutsche Entomologische Zeitschrift 63(2): 211-270. https://doi.org/10.3897/dez.63.10241
Checklist of taxa represented in cladistic analysis of Odacanthini :
Figure 1 from: Lehmann AW, Devriese H, Tumbrinck T, Skejo J, Lehmann GUC, Axel Hochkirch A (2017) The importance of validated alpha taxonomy for phylogenetic and DNA barcoding studies: a comment on species identification of pygmy grasshoppers (Orthoptera, Tetrigidae). ZooKeys 679: 139-144. https://doi.org/10.3897/zookeys.679.12507
Figure 1 - Neighbour-joining tree based upon the COI data, illustrating the clustering of the Chinese samples by Zhao et al. (2016) together with Paratettix and not Tetrix species, data extracted from the Barcoding of life project.
Figure 46 from: Liebherr JK (2016) Cyphocoleus Chaudoir (Coleoptera, Carabidae, Odacanthini): descriptive taxonomy, phylogenetic relationships, and the Cenozoic history of New Caledonia. Deutsche Entomologische Zeitschrift 63(2): 211-270. https://doi.org/10.3897/dez.63.10241
Figure 46 - Parsimony cladogram of subtribe Homethina with characters indicated; character numbers above cladogram stems, state numbers below stems [cladogram divided into two parts joined at "A"]; geographic abbreviations as in Figs 44–45.
Figures 40-43 from: Liebherr JK (2016) Cyphocoleus Chaudoir (Coleoptera, Carabidae, Odacanthini): descriptive taxonomy, phylogenetic relationships, and the Cenozoic history of New Caledonia. Deutsche Entomologische Zeitschrift 63(2): 211-270. https://doi.org/10.3897/dez.63.10241
Figures 40-43 - Female gonocoxal ovipositor and female reproductive tract, ventral view for taxa assigned to Odacanthini (see Suppl. material 1): 40, Neoeudalia nigra; 41, Odacantha melanura; 42, Colliuris ludoviciana; 43, Colliuris subdistincta. For abbreviations see Table 1.
Figures 28-33 from: Liebherr JK (2016) Cyphocoleus Chaudoir (Coleoptera, Carabidae, Odacanthini): descriptive taxonomy, phylogenetic relationships, and the Cenozoic history of New Caledonia. Deutsche Entomologische Zeitschrift 63(2): 211-270. https://doi.org/10.3897/dez.63.10241
Figures 28-33 - 28–32 Male aedeagus with associated abdominal segments VIII and IX, dorsal view, Cyphocoleus spp.: 28, Cyphocoleus heterogenus; 29, Cyphocoleus angustatus; 30, Cyphocoleus mirabilis; 31, Cyphocoleus cordatus; 32, Cyphocoleus subulatus. 33. Abdominal lateroventrites VIII (left) and laterotergites VIII (right), showing membranous division of laterotergites, male Cyphocoleus latipennis. Dorsal gland reservoir is globose without dorsal lobe. For abbreviations see Table 1.
Figures 44-45 from: Liebherr JK (2016) Cyphocoleus Chaudoir (Coleoptera, Carabidae, Odacanthini): descriptive taxonomy, phylogenetic relationships, and the Cenozoic history of New Caledonia. Deutsche Entomologische Zeitschrift 63(2): 211-270. https://doi.org/10.3897/dez.63.10241
Figures 44-45 - Parsimony cladograms comprising exemplar taxa of Odacanthini used in phylogenetic analysis, rooted at the outgroup Celaenephes linearis (tribe Lebiini): 44, 852-step length strict consensus of 29 equally parsimonious trees of 835-step length (CI = 22, RI = 74) [A = subtribe Actenonycina; H = subtribe Homethina subtrib. n.; P = subtribe Pentagonicina; O = subtribe Odacanthina]; 45, majority-rule consensus of 29 equally parsimonious trees with all resolved nodes present in 100% of the multiple equally parsimonious trees; i.e. the majority-rule consensus is the result of collapsing 8 nodes. Abbreviations for geographical distributions include: Af, Africa; As, Asia; Eu, Europe; NC, New Caledonia; Nea, Nearctic; Neo, Neotropical; NZ, New Zealand; Oz, Australia.
Figures 26-27 from: Liebherr JK (2016) Cyphocoleus Chaudoir (Coleoptera, Carabidae, Odacanthini): descriptive taxonomy, phylogenetic relationships, and the Cenozoic history of New Caledonia. Deutsche Entomologische Zeitschrift 63(2): 211-270. https://doi.org/10.3897/dez.63.10241
Figures 26-27 - Right maxillary stipes, lacinia, galea, and palp, Cyphocoleus subulatus: 26, dorsal view; 27, ventral view. Single-segmented galea of Cyphocoleus and other Homethina lies laterad the lacinia, with a rabbeted groove on the dorsomedial surface of the galea accommodating the lateral margin of the lacinia, thereby supporting lacinia during alternating, rotary movements of the maxillae. For abbreviations see Table 1.
Figures 34-39 from: Liebherr JK (2016) Cyphocoleus Chaudoir (Coleoptera, Carabidae, Odacanthini): descriptive taxonomy, phylogenetic relationships, and the Cenozoic history of New Caledonia. Deutsche Entomologische Zeitschrift 63(2): 211-270. https://doi.org/10.3897/dez.63.10241
Figures 34-39 - Female gonocoxal ovipositor and female reproductive tract, ventral view for taxa assigned to Odacanthini (see Suppl. material 1): 34, Actenonyx bembidioides; 35, Homethes gracilis; 36, Stenocheila lacordairei; 37, Pentagonica daimella; 38, Scopodes edwardsii; 39, Eudalia atrata. For abbreviations see Table 1.
Figure 166 from: Liebherr JK (2016) Cyphocoleus Chaudoir (Coleoptera, Carabidae, Odacanthini): descriptive taxonomy, phylogenetic relationships, and the Cenozoic history of New Caledonia. Deutsche Entomologische Zeitschrift 63(2): 211-270. https://doi.org/10.3897/dez.63.10241
Figure 166 - Diversification history of odacanthine subtribes and generic-level taxa within Homethina placed in temporal context defined by major geological events and molecular dating estimates (Ober and Heider 2010). Major events and dating estimates constraining historical relationships of the represented taxa include: 1, 100–105 Ma, estimated age of origin of Odacanthini relative to its proposed adelphotaxon Peleciini (Ober and Maddison 2008, Ober and Heider 2010); 2, 84–65 Ma, estimated divergence times of lineages within Odacanthini, represented in this study by Actenonycina, Pentagonicina, and Odacanthina (Ober and Heider 2010); 3, 84–61Ma, rifting of Zealandia, including New Caledonia and New Zealand, from Australia (McLoughlin 2001, Ladiges and Cantrill 2007); 4, 50–30 Ma, extended rifting and increased isolation of Australia and South America from Antarctica due to opening of the Tasman Sea at 50 Ma (Woodburne and Case 1996, Sanmartín and Ronquist 2004), development of the Australo-Antarctic Gulf at 35–32 Ma (McLoughlin 2001, Lawver and Gahagan 2003), and opening of Drake Passage at 34–30 Ma (Livermore et al. 2005); 5, 46–37 Ma, hypothesized submergence of New Caledonia (Grandcolas et al. 2008); 6, 34–23 Ma, hypothesized Oligocene drowning of New Zealand (Campbell and Hutching 2007); 7, 15–10 Ma, closing of Panamanian Isthmus establishing subaerial contact between South and Central America (Montes et al. 2015). Time of divergence of Cyphocoleus unconstrained due to lack of molecular-dating data. Under vicariance hypothesis (v), the ancestor of Cyphocoleus was emplaced on Zealandia in Late Cretaceous (event 3). Under dispersal scenario (d with dashed line), Cyphocoleus dispersal to New Caledonia is constrained at the lower bound by reemergence of Grande Terre after putative Oligocene submergence (event 5), and at upper bound by amphiantarctic vicariance at Austral-Antarctic Gulf that isolated Antarctica from Australia (event 4).
Figures 14-25 from: Liebherr JK (2016) Cyphocoleus Chaudoir (Coleoptera, Carabidae, Odacanthini): descriptive taxonomy, phylogenetic relationships, and the Cenozoic history of New Caledonia. Deutsche Entomologische Zeitschrift 63(2): 211-270. https://doi.org/10.3897/dez.63.10241
Figures 14-25 - 14–18 Male aedeagus with associated abdominal segments VIII and IX, dorsal view for taxa assigned to Odacanthini (see Suppl. material 1): 14, Colliuris oglobini; 15, Erectocolliuris fairmairei; 16, Basistichus micans; 17, Archicolliuris papua; 18, Colliuris ludoviciana; 19–24 Male aedeagus with associated abdominal segments VIII and IX, dorsal view, for taxa assigned to Lachnophorini (Erwin and Zamorano 2014; repository indicated in parentheses): 19, Selina westermanni Motschulsky (BMUL); 20, Eucaerus sp. (Trinidad, Simla; CUIC); 21, Anchonoderus subtilis Bates (CUIC); 22, Euphorticus pubescens (Dejean) (CUIC); 23, Lachnophorus leucopterus Chevrolat (CUIC); 24, Calybe argentina Brèthes (CUIC). 25. Male aedeagus with associated abdominal segments VIII and IX, dorsal view, for taxon assigned to Calophaenini (Erwin and Zamorano 2014; repository indicated in parentheses): Calophaena cruciata Bates (CUIC). For abbreviations see Table 1.
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