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Figure 6 in Traditional and geometric morphometric analyses reveal homogeneity in European Scutacarus acarorum Goeze, 1780 populations (Acari: Scutacaridae: Heterostigmatina)
Figure 6. Unrooted neighbour-joining (NJ) trees of Scutacarus acarorum populations based on squared Mahalanobis distances obtained from canonical variates analysis (CVA) on canonical variates values of (A) log-transformed raw data; (B) log-transformed size corrected data; (C) shape coordinates.
Supplementary material 4 from: Dixey K, Woodburn M, Hardy H, Livermore L, Smith VS (2020) Identification of provisional Centres of Excellence for digitisation of European natural science collections. Research Ideas and Outcomes 6: e57750. https://doi.org/10.3897/rio.6.e57750
WP7 MS45 Centres of Excellence - Service Descriptions
Supplementary material 3 from: Dixey K, Woodburn M, Hardy H, Livermore L, Smith VS (2020) Identification of provisional Centres of Excellence for digitisation of European natural science collections. Research Ideas and Outcomes 6: e57750. https://doi.org/10.3897/rio.6.e57750
WP7 MS45 Centres of Excellence - Service Requirements
Supplementary material 2 from: Dixey K, Woodburn M, Hardy H, Livermore L, Smith VS (2020) Identification of provisional Centres of Excellence for digitisation of European natural science collections. Research Ideas and Outcomes 6: e57750. https://doi.org/10.3897/rio.6.e57750
WP7 MS45 Centres of Excellence - Service x Levels
Supplementary material 1 from: Dixey K, Woodburn M, Hardy H, Livermore L, Smith VS (2020) Identification of provisional Centres of Excellence for digitisation of European natural science collections. Research Ideas and Outcomes 6: e57750. https://doi.org/10.3897/rio.6.e57750
WP7 workshop for identification of provisional centres of excellence for digitisation
Supplementary material for Roca-Neyra Equids: Late Miocene to Early Pleistocene Hipparion - Equus database for multivariate and statistical analysis for European fossil Equids
<p>We undertake a redescription of the equid sample from the early Pleistocene of Roca – Neyra, France. This locality has been recently calibrated at the Pliocene/Pleistocene boundary (2.6 ± 0.2 Ma) and therefore it is of interest for the first appearance of the genus <i>Equus </i>and last appearance of hipparionine horses. The Roca – Neyra equid sample, re – analyzed herein using morphological, morphometrical and statistical analyses, has revealed the co – occurrence of <i>Plesiohipparion</i> cf. ?<i>P.</i> <i>rocinantis</i> and <i>Equus</i> cf.<i> E. livenzovensis</i>. The analysis undertaken on several European, African and Asian <i>"Hipparion"</i> sensu lato species from late Miocene to early Pleistocene has revealed different remnant <i>Hipparion</i> lineages in the Plio – Pleistocene of Europe: <i>Plesiohipparion</i>, <i>Proboscidippaion</i> and likely <i>Cremohipparion</i>. The discovery of the first European monodactyl horse, <i>Equus</i> cf. <i>E.</i> <i>livenzovensis</i> in itself correlates Roca – Neyra with other 2.6 Ma European localities in Italy, Spain and in the Khapry area (Azov Sea region). The morphological description of the <i>Equus</i> cf. <i>E. livenzovensis</i> lower cheek teeth has highlighted intermediate features between the North American Pliocene species <i>Equus simplicidens</i> and early Pleistocene European <i>Equus stenonis.</i> Our study supports the hypothesis that <i>E. livenzovensis</i> is a plausible evolutionary predecessor for the <i>Equus stenonis</i> group. These observations underscore the importance of Roca – Neyra, as an important locality for the last European hipparions and the first <i>Equus</i> in the early Pleistocene of Europe.</p>
Figure 2 from: Valuyskikh OE, Teteryuk LV, Pylina YI, Sushentsov OE, Martynenko NA, Shadrin DM (2020) Phylogenetic relationships and status of taxa of Pulsatilla uralensis and P. patens s.str. (Ranunculaceae) in north-eastern European Russia. PhytoKeys 162: 113-130. https://doi.org/10.3897/phytokeys.162.53361
Figure 2 Pulsatilla patens s.str. (L.) Mill. (P. patens subsp. patens) A–C flowers with different perianth colour D herbarium specimen of a flowering shoot and typical leaf blade E plant just after flowering with unripe fruits. The photographs show sample number 5 (A, D), sample number 15 (B) and sample number 18 (C).
Figure 1 from: Valuyskikh OE, Teteryuk LV, Pylina YI, Sushentsov OE, Martynenko NA, Shadrin DM (2020) Phylogenetic relationships and status of taxa of Pulsatilla uralensis and P. patens s.str. (Ranunculaceae) in north-eastern European Russia. PhytoKeys 162: 113-130. https://doi.org/10.3897/phytokeys.162.53361
Figure 1 Distribution map of the sampling sites of P. patens s.str. and P. uralensis in north-eastern European Russia and the Urals. The colour on the diagrams indicates the colour of the perianth in different taxa: blue-violet – P. patens s.str., yellow – P. uralensis. The locations (I–X) and samples correspond to Table 2.
Supplementary material 2 from: Valuyskikh OE, Teteryuk LV, Pylina YI, Sushentsov OE, Martynenko NA, Shadrin DM (2020) Phylogenetic relationships and status of taxa of Pulsatilla uralensis and P. patens s.str. (Ranunculaceae) in north-eastern European Russia. PhytoKeys 162: 113-130. https://doi.org/10.3897/phytokeys.162.53361
Informative nucleotide sites in cpDNA (matK, rbcL) for Pulsatilla
Figure 4 from: Valuyskikh OE, Teteryuk LV, Pylina YI, Sushentsov OE, Martynenko NA, Shadrin DM (2020) Phylogenetic relationships and status of taxa of Pulsatilla uralensis and P. patens s.str. (Ranunculaceae) in north-eastern European Russia. PhytoKeys 162: 113-130. https://doi.org/10.3897/phytokeys.162.53361
Figure 4 Combined Maximum Likelihood (ML) and Bayesian Inference (BI) phylogenetic tree (rbcL+ matK+ITS2) of 37 Pulsatilla samples and 10 outgroup samples. All new 28 samples of P. patens s.str. and P. uralensis are marked with dots. Outgroups include Anemone, Anemoclema, Clematis and Hepatica species. ML bootstrap support (left) and BI posterior probability (right) are recorded along branches. Values below 50% are not shown.
Figure 3 from: Valuyskikh OE, Teteryuk LV, Pylina YI, Sushentsov OE, Martynenko NA, Shadrin DM (2020) Phylogenetic relationships and status of taxa of Pulsatilla uralensis and P. patens s.str. (Ranunculaceae) in north-eastern European Russia. PhytoKeys 162: 113-130. https://doi.org/10.3897/phytokeys.162.53361
Figure 3 Pulsatilla uralensis (Zamelis) Tzvelev A–C flowers with different perianth colour D herbarium specimen of a flowering plant and different leaf blades E fruiting plant. The photographs show sample number 6 (B), sample number 7 (C) and sample number 25 (D).
Supplementary material 1 from: Valuyskikh OE, Teteryuk LV, Pylina YI, Sushentsov OE, Martynenko NA, Shadrin DM (2020) Phylogenetic relationships and status of taxa of Pulsatilla uralensis and P. patens s.str. (Ranunculaceae) in north-eastern European Russia. PhytoKeys 162: 113-130. https://doi.org/10.3897/phytokeys.162.53361
Maximum Likelihood and Bayesian Inference phylogenetic tree (rbcL)
Data from: European map of groundwater pH and calcium.
<p>Description of the files:</p> <p><strong>ADDITIONAL_RAW_DATA_E-Ukraine_Ca</strong>: Complementary data with Ca measurements compiled from Eastern Ukraine (Excel)</p> <p><strong>ADDITIONAL_RAW_DATA_E-Ukraine_pH</strong>: Complementary data with pH measurements compiled from Eastern Ukraine (Excel)</p> <p><strong>Ca_imp_RAW_DATA_used_for_modelling</strong>: Calcium-imputed data used for spatial modelling (Excel)</p> <p><strong>detailed_maps-panels_Ca_pH</strong>: Final map outputs with details, by European zones (JPEG)</p> <p><strong>pH_RAW_DATA_used_for_modelling</strong>: Coordinates and pH values used for modeling (Excel)</p> <p><strong>Raster_data_for_GIS</strong>: Model outputs for GIS (ASCII with ArcGIS project and legends)</p> <p><strong>sites_ca_GIS_points</strong>: Point data with Calcium measurements used for modelling (shapefile)</p> <p><strong>sites_pH_GIS_points</strong>: Point data with pH measurements used for modelling (shapefile)</p>
Data and code archive for 'Time perception and patience: Individual differences in interval timing precision predict choice impulsivity in European starlings, Sturnus vulgaris'
<p>Data and code for Andrews et al. '<strong>Time perception and patience: Individual differences in interval timing precision predict choice impulsivity in European starlings, <em>Sturnus vulgaris'</em></strong></p> <p>Version of November 02 2020</p> <p>The data are presented here with different degrees of processing (i.e. from every trial on every day by every bird separately in 'timing data.Rdata', to one summary row per bird in 'timing data by bird.csv'). Separate scripts do the processing, fit polynomials, reproduce the by-bird analyses in the paper, and run the numerical model. Please see the document 'Description of R scripts and files' for details of the different versions of the data and what each script does.</p> <p> </p>
European Language Resources Initiatives – Infrastructural and Policy Issues
<p>3<sup>rd </sup>Lecture</p>
Figure 1 from: Husemann M, Dey L-S, Hawlitschek O (2020) Vespa velutina nigrithorax Lepeltier, 1836 from Hamburg (Northern Germany) shares the same COI haplotype with other European populations. Journal of Hymenoptera Research 79: 111-115. https://doi.org/10.3897/jhr.79.57048
Figure 1 Haplotype network showing the relationships of the specimens from Hamburg compared to specimen entries from the BOLD database (Network created in PopArt).
Data from: Temperature-driven colour lightness and body size variation scale to local assemblages of European Odonata but are modified by propensity for dispersal
<p>1. Previous macrophysiological studies suggested that temperature-driven colour lightness and body size variations strongly influence biogeographical patterns in ectotherms. However, these trait-environment relationships scale to local assemblages and the extent to which they can be modified by dispersal remains largely unexplored. We test whether the predictions of the thermal melanism hypothesis and the Bergmann's rule hold for local assemblages. We also assess whether these trait-environment relationships are more important for species adapted to less stable (lentic) habitats, due to their greater dispersal propensity compared to those adapted to stable (lotic) habitats.</p> <p>2. We quantified the colour lightness and body volume of 99 European dragon- and damselflies (Odonata) and combined these trait information with survey data for 518 local assemblages across Europe. Based on this continent-wide yet spatially explicit dataset, we tested for effects temperature and precipitation on the colour lightness and body volume of local assemblages and assessed differences in their relative importance and strength between lentic and lotic assemblages, while accounting for spatial and phylogenetic autocorrelation.</p> <p>3. The colour lightness of assemblages of odonates increased and body size decreased with increasing temperature. Trait-environment relationships in the average and phylogenetic predicted component were equally important for assemblages of both habitat types but were stronger in lentic assemblages when accounting for phylogenetic autocorrelation.</p> <p>4. Our results show that the mechanism underlying colour lightness and body size variations scale to local assemblages, indicating their general importance. These mechanisms were of equal evolutionary significance for lentic and lotic species, but higher dispersal ability seems to enable lentic species to cope better with historical climatic changes. The documented differences between lentic and lotic assemblages also highlight the importance of integrating interactions of thermal adaptations with proxies of the dispersal ability of species into trait-based models, for improving our understanding of climate-driven biological responses.</p>
Supplementary material 9 from: Harper L, Watson H, Donnelly R, Hampshire R, Sayer C, Breithaupt T, Hänfling B (2020) Using DNA metabarcoding to investigate diet and niche partitioning in the native European otter (Lutra lutra) and invasive American mink (Neovison vison). Metabarcoding and Metagenomics 4: e56087. https://doi.org/10.3897/mbmg.4.56087
Figure S3
Supplementary material 10 from: Harper L, Watson H, Donnelly R, Hampshire R, Sayer C, Breithaupt T, Hänfling B (2020) Using DNA metabarcoding to investigate diet and niche partitioning in the native European otter (Lutra lutra) and invasive American mink (Neovison vison). Metabarcoding and Metagenomics 4: e56087. https://doi.org/10.3897/mbmg.4.56087
Figure S4
Supplementary material 11 from: Harper L, Watson H, Donnelly R, Hampshire R, Sayer C, Breithaupt T, Hänfling B (2020) Using DNA metabarcoding to investigate diet and niche partitioning in the native European otter (Lutra lutra) and invasive American mink (Neovison vison). Metabarcoding and Metagenomics 4: e56087. https://doi.org/10.3897/mbmg.4.56087
Figure S5
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.