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975
datasets available to search
ShareScore release 0.9.0
Dataset results
975 results for “Spatial transcriptomics”
Spatial transcriptome sequencing of primary nasopharyngeal carcinoma tissues
GEO Series GSE200310. Homo sapiens. 2 samples. Type: Expression profiling by high throughput sequencing.
Molecular and spatial transcriptomic classification of midbrain dopamine neurons and their alterations in a LRRK2G2019S model of Parkinson’s disease
GEO Series GSE271781. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
Transcriptome after spatial exploration in CA1-specific brain tissue from wildtype and NEIL3-deficient mice
GEO Series GSE148408. Mus musculus. 16 samples. Type: Expression profiling by high throughput sequencing.
Visium spatial transcriptomics and proteomics identifies novel hepatic cell populations and transcriptomic signatures of alcohol-associated hepatitis
GEO Series GSE278662. Homo sapiens. 8 samples. Type: Other.
Spatial transcriptomics of Atg7 knockout mice reveals ATG7’s role in antimicrobial immunity against nontuberculous mycobacteria
GEO Series GSE297621. Mus musculus. 2 samples. Type: Other.
A spatially anchored transcriptomic atlas of the human kidney papilla identifies significant immune injury in patients with stone disease
GEO Series GSE231630. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing.
A spatial vascular transcriptomic, proteomic and phosphoproteomic atlas unveils an angiocrine Tie Wnt signaling axis in the liver
GEO Series GSE155797. Mus musculus. 32 samples. Type: Expression profiling by high throughput sequencing.
Spatial transcriptome of developmental mouse brain reveals temporal dynamics of gene expressions and heterogeneity of the claustrum
GEO Series GSE229508. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing.
Spatial transcriptomics map of the embryonic mouse brain: a tool to explore neurogenesis
GEO Series GSE240715. Mus musculus. 4 samples. Type: Other.
Integrated transcriptomics of human blood vessels defines the spatially regulated niche for early mesenchymal progenitors
GEO Series GSE217216. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
The effect of exposure to neighborhood violence on GR signaling in lung tumors [Spatial Transcriptomics]
GEO Series GSE268049. Homo sapiens. 15 samples. Type: Expression profiling by high throughput sequencing; Other.
Spatial transcriptomic and morpho-functional information derived from single mouse FFPE slides allows in-depth fingerprinting of lung fibrosis
GEO Series GSE288947. Mus musculus. 13 samples. Type: Expression profiling by high throughput sequencing.
Fate determination of msc by inflammatory niche in HO [spatial transcriptomics]
GEO Series GSE246448. Mus musculus. 4 samples. Type: Other.
Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer [CosMx]
GEO Series GSE277782. Homo sapiens. 7 samples. Type: Other.
Gain-of-function ENL YEATS domain mutations impede nephrogenesis through gene expression control [Spatial Transcriptomics]
GEO Series GSE283433. Mus musculus. 2 samples. Type: Other.
Spatial transcriptomics reveals distinct role of monocytes/macrophages with high FCGR3A expression in kidney transplant rejections
GEO Series GSE304669. Homo sapiens. 4 samples. Type: Other.
Spatial transcriptomic profiling of the aging mouse brain [spatial scRNA-seq]
GEO Series GSE193107. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing; Other.
Comparing 10x Visium spatial transcriptomic technologies
GEO Series GSE254652. Mus musculus. 26 samples. Type: Expression profiling by high throughput sequencing; Other.
Spatial and temporal development of Müller glial cells in hiPSC-derived retinal organoids facilitating the cell enrichment and transcriptome analysis
GEO Series GSE188698. Homo sapiens. 15 samples. Type: Expression profiling by high throughput sequencing.
Dynamic control of metabolic zonation and liver repair by endothelial cell Wnt2 and Wnt9b revealed by single cell spatial transcriptomics using Molecular Cartography
GEO Series GSE199463. Mus musculus. 5 samples. Type: Other.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.