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454
datasets available to search
ShareScore release 0.9.0
Dataset results
454 results for “non-coding RNAs”
Transgenerational profiling of small non-coding RNAs in C.elegans RSD mutants
GEO Series GSE40457. Caenorhabditis elegans. 9 samples. Type: Non-coding RNA profiling by high throughput sequencing.
RNA sequencing of circular RNAs, long non-coding RNAs ,and mRNAs in human keloid dermal tissues
GEO Series GSE212954. Homo sapiens. 11 samples. Type: Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing.
Genome-wide profiling of the cardiac transcriptome identifies novel heart specific long non-coding RNAs involved in pathogenesis of Arrhythmogenic Cardiomyopathy
GEO Series GSE107157. Homo sapiens. 11 samples. Type: Expression profiling by high throughput sequencing.
Identification of NLRP3 inflammasome binding non-coding RNAs in activated iBMDMs
GEO Series GSE118722. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing.
p53-inducible long non-coding RNAs encode functional peptides in hepatocellular carcinoma cells
GEO Series GSE125758. Homo sapiens. 10 samples. Type: Expression profiling by high throughput sequencing; Other.
p53-inducible long non-coding RNAs encode functional peptides in hepatocellular carcinoma cells [Ribo-seq]
GEO Series GSE125757. Homo sapiens. 2 samples. Type: Other.
MRNAs and non-coding RNAs expression in human placental tissue with Hemoglobin Bart's Hydrops Fetalis Syndrome
GEO Series GSE184915. Homo sapiens. 10 samples. Type: Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing.
Link to dataset related to article "Not only cancer: the long non-coding RNA MALAT1 affects the repertoire of alternatively spliced transcripts and circular RNAs in multiple sclerosis."
<p>Long non-coding RNAs (lncRNAs) are post-transcriptional and epigenetic regulators, whose implication in neurodegenerative and autoimmune diseases remains poorly understood. We analyzed publicly available microarray data sets to identify dysregulated lncRNAs in multiple sclerosis (MS), a neuroinflammatory autoimmune disease. We found a consistent upregulation in MS of the lncRNA MALAT1 (2.7-fold increase; meta-analysis, P = 1.3 × 10-8; 190 cases, 182 controls), known to regulate alternative splicing (AS). We confirmed MALAT1 upregulation in two independent MS cohorts (1.5-fold increase; P < 0.01; 59 cases, 50 controls). We hence performed MALAT1 overexpression/knockdown in cell lines, demonstrating that its modulation impacts on endogenous expression of splicing factors (HNRNPF and HNRNPH1) and on AS of MS-associated genes (IL7R and SP140). Minigene-based splicing assays upon MALAT1 modulation recapitulated IL7R and SP140 isoform unbalances observed in patients. RNA-sequencing of MALAT1-knockdown Jurkat cells further highlighted MALAT1 role in splicing (approximately 1100 significantly-modulated AS events) and revealed its contribution to backsplicing (approximately 50 differentially expressed circular RNAs). Our study proposes a possible novel role for MALAT1 dysregulation and the consequent AS alteration in MS pathogenesis, based on anomalous splicing/backsplicing profiles of MS-relevant genes.</p>
Co-expression Networks of mRNAs and non-coding RNAs of bones around implants in hyperlipidemic rats (RNA-seq data sets)
GEO Series GSE113520. Rattus norvegicus. 8 samples. Type: Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing.
Co-expression Networks of mRNAs and non-coding RNAs of bones around implants in hyperlipidemic rats
GEO Series GSE113523. Rattus norvegicus. 16 samples. Type: Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing.
Whole transcriptome analysis of coding and non-coding RNAs associated with Spodoptera frugiperda feeding in Zea mays
GEO Series GSE247976. Zea mays. 4 samples. Type: Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing.
The regulation of synchronism by abscisic acid-responsive small non-coding RNAs during somatic embryogenesis in larch (Larix leptolepis)
GEO Series GSE49055. Larix kaempferi. 2 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Identification of known and novel long non-coding RNAs potentially responsible for the effects of BMD GWAS loci
GEO Series GSE186922. Homo sapiens. 17 samples. Type: Expression profiling by high throughput sequencing.
Identification and characterization of small non-coding RNAs from Chinese fir by high throughput sequencing
GEO Series GSE24226. Cunninghamia lanceolata. 1 samples. Type: Non-coding RNA profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.