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613
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Dataset results
613 results for “stress analysis”
Comparative analysis reveals genomic features of stress-induced transcriptional readthrough
GEO Series GSE98906. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.
Global transcriptome analysis of gene expression changes in Mesorhizobium alhagi CCNWXJ12-2 under salt stress
GEO Series GSE57306. Mesorhizobium alhagi CCNWXJ12-2. 2 samples. Type: Expression profiling by high throughput sequencing.
Genome-wide analysis of ADP-ribosylation by ADPr-ChAP reveals its association with chromatin after oxidative stress
GEO Series GSE69885. Homo sapiens. 7 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
ChIP-Seq analysis of switchgrass transcriptome in response to single drought and combinations of drought and heat stress
GEO Series GSE196295. Panicum virgatum. 63 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Next Generation Sequencing Facilitates Quantitative Analysis of ChIP-sequence of U2OS cells expressing FANCD2-3x FLAG under mild replication stress by low dose aphidicolin (APH)
GEO Series GSE104464. Homo sapiens. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Transcriptome analysis of alternative splicing under heat stress condition in atcyp18-1 mutant compared to wild type of Arabidopsis
GEO Series GSE159796. Arabidopsis thaliana. 12 samples. Type: Expression profiling by high throughput sequencing.
Transcriptomic and epigenomic analysis of endoplasmic reticulum stress signaling in mouse primary hepatocytes and liver
GEO Series GSE122508. Mus musculus. 52 samples. Type: Expression profiling by array; Genome binding/occupancy profiling by high throughput sequencing.
Analysis of Aldh1l1-tdTomato+ cells during chronic stress by scRNA-seq
GEO Series GSE262979. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and non-antibiotic pharmaceuticals stressed E. coli K-12 LE392, P. putida KT2440, and RP4 plasmid Transcriptomes [experiment 2
GEO Series GSE131228. Pseudomonas putida KT2440; Plasmid RP4; Escherichia coli K-12. 9 samples. Type: Expression profiling by high throughput sequencing.
Transcriptome analysis of Osbhlh148 mutant plants under controlled drought stress and well-watered conditions at vegetative stage
GEO Series GSE65024. Oryza sativa Japonica Group. 8 samples. Type: Expression profiling by high throughput sequencing.
RNA-seq analysis of mycobacteria stress response to microgravity
The aim of this work is to determine whether mycobacteria have enhanced virulence during space travel and what mechanisms they use to adapt to microgravity. M. marinum and LHM4 were grown in high aspect ratio vessels (HARV) in a rotary cell culture system (RCCS) under normal gravity (NG) or low shear simulated microgravity (MG). To determine the effect of MG on the stress responses activated by the growth conditions, we used RNAseq to examine what genes were expressed. For RNAseq, the bacteria are harvested, RNA isolated and converted DNA (cDNA), and the cDNA sequenced. Using bioinformatics, the amount of expression of the different M. marinum genes were compared between the NG and MG samples. To make sure that we were examining only gene expression changes due to MG, only bacteria in early exponential growth were used in the RNAseq studies. Triplicate NG and MG cultures were used to generate samples of bacteria grown for ~40 hrs. We also grew triplicate cultures for 4 days and then diluted them again and grew them for another ~40 hrs so we could examine gene expression from bacteria exposed for a longer time. In summary, this study determined that waterborne mycobacteria alter their growth, expression of stress responses, and their sensitivity to oxidizing conditions when subjected to growth under MG.
Comprehensive multi-omics analysis reveals mitochondrial stress as a central biological hub for spaceflight impact
Given the limited knowledge of the biological impact of spaceflight, a multi-omics, systems biology approach was used to investigate NASA’s GeneLab data and astronaut biomedical profiles. These data consist of hundreds of samples flown in space, human metrics from 59 astronauts, and confirmatory data from NASA’s Twin Study, analyzed together for consistent transcriptomic, proteomic, metabolomic, and epigenetic response to spaceflight. Pathway analysis showed significant enrichment of mitochondrial activity and innate immunity. Muscle and liver tissues showed that chronic inflammation, may be a response to mitochondrial dysfunction. Additional pathways altered in spaceflight included cell cycle, circadian rhythm, and olfactory activity pathways, all of which are known to have interactions with mitochondrial activity. Evidence of altered mitochondrial function was also found in the urine and blood metabolic data compiled from the astronaut cohort and NASA Twin Study data, all of which indicate mitochondrial stress as a consistent phenotype of spaceflight.
Gene expression analysis of two elite breeding barley lines with distinct tolerance to abiotic stress
GEO Series GSE101962. Hordeum vulgare. 47 samples. Type: Expression profiling by array.
Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and BPA stress human neural stem cells(hNSC) Transcriptomes
GEO Series GSE185138. Homo sapiens. 2 samples. Type: Expression profiling by high throughput sequencing.
RNA-seq Analysis of the Salt Stress Induced Transcripts in Fast Growing Bioenergy Tree, Paulownia elongata
GEO Series GSE94501. Paulownia elongata. 2 samples. Type: Expression profiling by high throughput sequencing.
Transcriptomic analysis of two 14-3-3 proteins Bmh1 and Bmh2 under osmotic and oxidative stresses in the entomopathogen fungus Beauveria bassiana by using RNA sequencing
GEO Series GSE58688. Beauveria bassiana. 6 samples. Type: Expression profiling by high throughput sequencing.
Transcriptome Analysis of Cucumber (Cucumis sativus L.) Leaves Under Chilling Stress
GEO Series GSE111998. Cucumis sativus. 12 samples. Type: Expression profiling by high throughput sequencing.
An integrated analysis of small RNAs, degradome and transcriptome in rice seedling exposure to cadmium stress [degradome]
GEO Series GSE116774. Oryza sativa. 2 samples. Type: Expression profiling by high throughput sequencing.
Skin transcriptome analysis in Brangus cattle under heat stress
GEO Series GSE244620. Bos taurus. 10 samples. Type: Expression profiling by high throughput sequencing.
Transcriptome analysis of chrysanthemum (Dendranthema grandiflorum) in response to low temperature stress
GEO Series GSE102413. Chrysanthemum x morifolium. 4 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.