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1,076 results for “Metabarcoding”
Supplementary material 2 from: Hubancheva A, Bozicevic V, Morinière J, Goerlitz HR (2023) DNA metabarcoding data from faecal samples of the lesser (Myotis blythii) and the greater (Myotis myotis) mouse-eared bats from Bulgaria. Metabarcoding and Metagenomics 7: e106844. https://doi.org/10.3897/mbmg.7.106844
Taxonomic relationships and relative abundance of prey and parasite species in faecal samples from M. myotis and M. blythii from Bulgaria
Supplementary material 9 from: Macher T-H, Schütz R, Yildiz A, Beermann AJ, Leese F (2023) Evaluating five primer pairs for environmental DNA metabarcoding of Central European fish species based on mock communities. Metabarcoding and Metagenomics 7: e103856. https://doi.org/10.3897/mbmg.7.103856
Processed TaXon tables of each primer pair (subtracted negative controls and filtered for fish and lamprey taxa OTUs)
Supplementary material 1 from: Macher T-H, Schütz R, Yildiz A, Beermann AJ, Leese F (2023) Evaluating five primer pairs for environmental DNA metabarcoding of Central European fish species based on mock communities. Metabarcoding and Metagenomics 7: e103856. https://doi.org/10.3897/mbmg.7.103856
Pairwise comparison of the log-transformed reads of the non-normalized mock community (MC1) compared to the DNA concentration (ng/ul) of each species
Supplementary material 3 from: Macher T-H, Schütz R, Yildiz A, Beermann AJ, Leese F (2023) Evaluating five primer pairs for environmental DNA metabarcoding of Central European fish species based on mock communities. Metabarcoding and Metagenomics 7: e103856. https://doi.org/10.3897/mbmg.7.103856
Sampled specimens and their respective species assignment collected for the fish mock community, extraction date, collection site, and concentration after DNA extraction
Supplementary material 4 from: Macher T-H, Schütz R, Yildiz A, Beermann AJ, Leese F (2023) Evaluating five primer pairs for environmental DNA metabarcoding of Central European fish species based on mock communities. Metabarcoding and Metagenomics 7: e103856. https://doi.org/10.3897/mbmg.7.103856
List of all species reported from Germany, their occurrence status, and their presence in the mock community (data from fishbase.org)
Supplementary material 2 from: Macher T-H, Schütz R, Yildiz A, Beermann AJ, Leese F (2023) Evaluating five primer pairs for environmental DNA metabarcoding of Central European fish species based on mock communities. Metabarcoding and Metagenomics 7: e103856. https://doi.org/10.3897/mbmg.7.103856
Pairwise comparison of the log-transformed reads of the non-normalized mock community (MC1) compared to log-transformed reads of the normalized mock community (MC2) of each species
Monitoring the birds and the bees: Environmental DNA metabarcoding of flowers detects plant–animal interactions
<p>Animal pollinators are vital for the reproduction of ~90% of flowering plants. However, many of these pollinating species are experiencing declines globally, making effective pollinator monitoring methods more important than ever before. Pollinators can leave DNA on the flowers they visit, and metabarcoding of these environmental DNA (eDNA) traces provides an opportunity to detect the presence of flower visitors. Our study, collecting flowers from seven plant species with diverse floral morphologies, for eDNA metabarcoding analysis, illustrated the value of this novel survey tool. eDNA metabarcoding using three assays, including one developed in this study to target common bush birds, recorded more animal species visiting flowers than visual surveys conducted concurrently, including birds, bees, and other species. We also recorded the presence of a flower visit from a western pygmy possum; to our knowledge, this is the first eDNA metabarcoding study to simultaneously identify the interaction of insect, mammal, and bird species with flowers. The highest diversity of taxa was detected on large inflorescence flower types found on <em>Banksia arborea </em>and <em>Grevillea georgeana</em>. The study demonstrates that the ease of sample collection and the robustness of the metabarcoding methodology have profound implications for future management of biodiversity, allowing us to monitor both plants and their attendant cohort of potential pollinators. This opens avenues for rapid and efficient comparison of biodiversity and ecosystem health between different sites and may provide insights into surrogate pollinators in the event of pollinator declines.</p>
Phytoplankton prey of an abundant estuarine copepod identified in situ using DNA metabarcoding
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Data from: Comparison of fish detections, community diversity, and relative abundance using environmental DNA metabarcoding and traditional gears
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Data from: Metabarcoding reveals diet diversity in an ungulate community in Thailand
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Data from: 18S rRNA metabarcoding diet analysis of the predatory fish community across seasonal changes in prey availability
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Data from: Benchmarking DNA metabarcoding for biodiversity-based monitoring and assessment
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Metabarcoding of the microbial community inhabiting the phosphogypsum stockpiles of the city of Huelva (SW, Spain)
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Data from: DNA metabarcoding multiplexing and validation of data accuracy for diet assessment: application to omnivorous diet
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eDNA metabarcoding in lakes to quantify influences of landscape features and human activity on aquatic invasive species prevalence and fish community diversity
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Data from: Validation of COI metabarcoding primers for terrestrial arthropods
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Data from: DNA metabarcoding for high-throughput monitoring of estuarine macrobenthic communities
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Data from: Advancing the integration of multi-marker metabarcoding data in dietary analysis of trophic generalists
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Data from: Agriculture shapes the trophic niche of a bat preying on multiple pest arthropods across Europe: evidence from DNA metabarcoding
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Data from: DNA metabarcoding illuminates dietary niche partitioning by African large herbivores
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Allen Brain Atlas
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.