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470
datasets available to search
ShareScore release 0.9.0
Dataset results
470 results for “spatial pattern”
Single-cell and spatial transcriptomics of A-P and D-V patterned human trunk embryoid model (hTEM)
GEO Series GSE314260. Homo sapiens. 17 samples. Type: Expression profiling by high throughput sequencing; Other.
Supplemental_materials: Spatial co-fragmentation pattern of cell-free DNA recapitulates in vivo chromatin organization and identifies tissues-of-origin
<p>The intermediate processed files for the manuscript: Spatial co-fragmentation pattern of cell-free DNA recapitulates in vivo chromatin organization and identifies tissues-of-origin</p>
Trend analysis and random forests models assessing spatial and temporal patterns of wildfire probability for the eastern United States
<p>We used historic fire perimeters from Monitoring Trends in Burn Severity to assess trends and drivers of wildfires in the eastern United States. We used a suite of predictor variables relating to weather, vegetation cover, and human infrastructure to parameterize random forests models predicting fire occurrence. Models were used to project annual burned areas using all selected predictors, and to project the marginal response of annual burned areas to the most important weather predictors. This dataset includes Python scripts, raster maps of fire probability, and tables summarizing analysis results. </p>
Spatial Transcriptomics of C. elegans Males and Hermaphrodites Identifies Sex-Specific Differences in Gene Expression Patterns
GEO Series GSE114723. Caenorhabditis elegans. 10 samples. Type: Expression profiling by high throughput sequencing.
Spatial co-fragmentation pattern of cell-free DNA recapitulates in vivo chromatin organization and identifies tissue-of-origin
GEO Series GSE124974. Homo sapiens. 3 samples. Type: Other.
Spatial Patterning and Transcriptomic Landscapes of Human Neural Organoids Derived by Local Delivery of Morphogens
GEO Series GSE289229. Homo sapiens. 2 samples. Type: Other.
The cis-regulatory logic integrating spatial and temporal patterning in the vertebrate neural tube
GEO Series GSE264172. Mus musculus. 184 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
Database for the manuscript "Improving the predictive skill of a distributed hydrological model by calibration on spatial patterns with multiple satellite datasets"
<p>******************************************************************************************************************************************************<strong>NOTICE: </strong>all datasets and tools provided in this database can and should only be used to reproduce the original experiment for which the database was created. The use of any datasets and tools in this database is subject to third party restrictions. Before copying or using this database for other purposes than reproducing the original experiment for which it was created, please ask for adequate authorisations to the author (Moctar Dembélé, mocdembele@gmail.com), who might additionaly need the authorization of the providers of the data and the tools available in this database. ******************************************************************************************************************************************************</p> <p>This database provides model outputs for the manuscript 'Improving the predictive skill of a distributed hydrological model by calibration on spatial patterns with multiple satellite datasets' by Dembélé et al.</p> <p>The content of each folder is as follows:</p> <p>-OF5 contains the model outputs for the model calibration case Q</p> <p>-OF42 contains the model outputs for the model calibration case MV-Q</p> <p>-OF46 contains the model outputs for the model calibration case MV-St</p> <p>-OF47 contains the model outputs for the model calibration case MV-Su</p> <p>-OF48 contains the model outputs for the model calibration case MV-Ea</p> <p>-OF49 contains the model outputs for the model calibration case MV</p> <p>-Input contains the data needed to setup and run the model</p> <p>-multiOFanalysis contains the results and the files of the analysis of the model outputs using the MATLAB software.</p> <p>For further information, please contact Moctar Dembélé, mocdembele@gmail.com</p> <p> </p>
Fine-scale tree spatial patterns are shaped by dispersal limitation which correlates to functional traits in a natural temperate forest - Raw SPPA data
<p>Raw data allowing the reproduction of the spatial point pattern analysis detailed in Beyns, R. et al. (2021) Fine-scale tree spatial patterns are shaped by dispersal limitation which correlates to functional traits in a natural temperate forest. <em>Journal of Vegetation Science</em>.</p>
Data from: Specialization patterns in symbiotic associations: a community perspective over spatial scales.
<p><strong>Nostoc_rbcLX_alignment: </strong>Alignment of Nostoc rbcLX sequences in FASTA format. </p> <p><strong>Name_equivalences: </strong>Excel cointaining mycociont species names, abbreviations, alignment code for each sample used in the aligment, forest and Nostoc phylogroup.</p> <p><strong>Abstract:</strong> </p> <ol> <li>Specialization, contextualized in a resource axis of an organism niche, is a core concept in ecology. In biotic interactions, specialization can be determined by the range of interacting partners. Evolutionary and ecological factors, in combination with the surveyed scale (spatial, temporal, biological and/or taxonomic) influence the conception of specialization.</li> <li>This study aimed to assess the specialization patterns and drivers in the lichen symbiosis, considering the interaction between the principal fungus (mycobiont) and the associated <em>Nostoc</em> (cyanobiont), from a community perspective considering different spatial scales. Thus, we determined <em>Nostoc</em> phylogroup richness and composition of lichen communities in eleven <em>Nothofagus pumilio</em> forests across a wide latitudinal gradient in Chile. To measure specialization, cyanobiont richness, Simpson’s, and d’ indices were estimated for 37 mycobiont species in these communities. Potential drivers that might shape <em>Nostoc</em> composition and specialization measures along the environmental gradient were analysed. Limitations in lichen distributional ranges due to the availability of their cyanobionts were studied. Turnover patterns of cyanobionts were identified at multiple spatial scales.</li> <li>The results showed that environmental factors shaped the <em>Nostoc</em> composition of these communities, thus limiting cyanobiont availability to establish the symbiotic association. Besides, specialization changed with the spatial scale and with the metric considered. Cyanolichens were more specialized than cephalolichens when considering partner richness and Simpson’s index, whereas the d’ index was mostly explained by mycobiont identity. Little evidence of lichen distributional ranges due to the distribution of their cyanobionts was found. Thus, lichens with broad distributional ranges either associated with several cyanobionts or with widely distributed cyanobionts. Comparisons between local vs. regional scales showed a decreasing degree of specialization at larger scales due to an increase in cyanobiont richness.</li> <li><em>Synthesis</em>. The results support the context dependency of specialization and how its consideration changes with the metric and the spatial scale considered. Subsequently, we suggest considering the entire community, and widening the spatial scale studied as it is crucial to understand factors determining specialization.</li> </ol>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.