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2,031 results for “transformation”
Fig. 1 in Increase in isoflavonoid content in Glycine max cells transformed by the constitutively active Ca independent form of the AtCPK1 gene
Fig. 1. The branch of phenylpropanoid pathway leading to flavonoids. PAL, phenylalanine ammonia-lyase; C4H, cinnamate 4-hydroxylase; CHS, chalkone synthase; CHR, chalkone reductase; CHI, chalkone isomerase; FN3H, flavanone 3-hydroxylase; IFS, isoflavone synthase; HID, 2-hydroxyisoflavanone dehydratase, IDT1, isoflavone dimethylallyltransferase 1; IDT2, isoflavone dimethylallyltransferase 2; C4DT, coumestrol 4-dimethylallyltransferase.
16S rRNA gene data for aerobic BTEX-degrading enrichments exposed to sulfonamide polyfluorinated substances in fire-fighting foams and transformation products
<p>Per- and polyfluoroalkyl substances (PFASs) from aqueous film forming foams (AFFFs) can hinder bioremediation of co-contaminants, such as trichloroethene (TCE) and benzene, toluene, ethylbenzene, and xylene (BTEX). Anaerobic dechlorination can require bioaugmentation of <em>Dehalococcoides</em> and for BTEX, oxygen is often sparged to stimulate in-situ aerobic biodegradation. We tested PFAS inhibition to TCE and BTEX bioremediation by exposing an anaerobic TCE-dechlorinating co-culture, an aerobic BTEX-degrading enrichment culture, and an anaerobic toluene-degrading enrichment culture to n-dimethyl perfluorohexane sulfonamido amine (AmPr-FHxSA), perfluorohexane sulfonamide (FHxSA), perfluorohexane sulfonic acid (PFHxS), or non-fluorinated surfactant sodium dodecyl sulfate (SDS). The anaerobic TCE-dechlorinating co-culture was resistant to individual PFASs exposures but was inhibited by >1,000x diluted AFFF. FHxSA and AmPr-FHxSA inhibited the aerobic BTEX-degrading enrichment. The anaerobic toluene-degrading enrichment was not inhibited by AFFF or individual PFASs. Increases in amino acids in the anaerobic TCE-dechlorinating co-culture compared to the control indicated stress response, while the BTEX culture exhibited lower concentrations of all amino acids upon exposure to most surfactants (both fluorinated and non-fluorinated) compared to the control. These data suggest the main mechanisms of microbial toxicity are related to interactions with cell membrane synthesis as well as protein stress signaling.</p>
Data from: The Jive Verification System and its Transformative Impact on Weather Forecasting Operations
<p><span><span>This repository </span><span>contains</span><span> the data used for the analysis </span><span>in</span><span> the paper “</span></span><span><span>The Jive Verification System and its Transformative Impact on Weather Forecasting Operations” Loveday et al. 2024 </span><span>to be </span><span>submitted</span><span> to the Bulletin of the American Meteorological Society (BAMS). </span></span><span> </span></p>
Repository for "Direct simulation and machine learning structure identification unravel soft martensitic transformation and twinning dynamics"
<p>These files contain data and generation codes for figures, a numerical code for the analysis of structure factors, and a numerical code for the simulation, in an article "Direct simulation and machine learning structure identification unravel soft martensitic transformation and twinning dynamics".</p>
Code for the paper "Visual experience orthogonalizes visual cortical stimulus responses via popula-tion code transformation"
<p>This repository contains data analysis code for the paper <a href="https://www.biorxiv.org/content/10.1101/2021.05.23.445338v4">Visual experience orthogonalizes visual cortical stimulus responses via population code transformation</a> by Failor, Carandini and Harris.</p> <p>The main data for the paper can be found <a href="https://figshare.com/articles/dataset/Data_from_paper_Visual_experience_orthogonalizes_visual_cortical_stimulus_responses_via_population_code_transformation_/27855423">here</a> in standardized <a href="https://www.ucl.ac.uk/cortexlab/open-neurophysiology-environment">ONE format</a>. Some of the analysis code in the current repository uses files in a non-standard internal format; data files in this format can be found <a href="https://doi.org/10.6084/m9.figshare.27890820.v1">here</a>.</p>
Dataset for Operational considerations for approximating molecular assembly by Fourier transform mass spectrometry
<p>Dataset to accompany paper in Frontiers in Astronomy and Space Sciences entitled, "Operational considerations for approximating molecular assembly by Fourier transform mass spectrometry." doi: 10.3389/fspas.2024.1485483</p>
Direct Observation of the Chemical Transformations in BiVO4 Photoanodes upon Prolonged Light-Aging Treatments
<p># Dataset of “ Direct Observation of the Chemical Transformations in BiVO4 Photoanodes upon Prolonged Light-Aging Treatments”</p> <p>-------</p> <p>## GENERAL INFORMATION<br>----------------------</p> <p>1. Dataset title: “Direct Observation of the Chemical Transformations in BiVO4 Photoanodes upon Prolonged Light-Aging Treatments”</p> <p>2. Authorship: <br> Name: Ramón Arcas <br> Institution: Institute of Advanced Materials (INAM), Universitat Jaume I, 12006 Castelló, Spain<br> ORCID: 0000-0001-5813-2768</p> <p> Name: Drialys Cardenas-Morcoso <br> Institution:Material Research and Technology (MRT) Department Luxembourg Institute of Science and Technology (LIST) 4422 Belvaux, Luxembourg<br> ORCID: 0000-0001-9916-4811<br> </p> <p> Name: Maria Chiara Spadaro <br> Institution: Catalan Institute of Nanoscience and Nanotechnology (ICN2) and BIST Campus UAB, Bellaterra 08193 Barcelona, Spain;<br> ORCID: 0000-0002-6540-0377</p> <p> Name: Miguel Garcia-Tecedor<br> Institution: Photoactivated Processes Unit, IMDEA Energy Institute, Parque Tecnológico de Móstoles, 28935 Móstoles, Madrid, Spain;<br> ORCID: 0000-0002-9664-4665</p> <p> Name: Camilo A. Mesa<br> Institution: Institute of Advanced Materials (INAM), Universitat Jaume I, 12006 Castelló, Spain;<br> ORCID: 0000-0002-8450-2563</p> <p> Name: Jordi Albiol<br> Institution: Advanced Electron Nanoscopy (GAeN) ICREA 08010 Barcelona, Catalonia, Spain<br> ORCID: 0000-0002-0695-1726</p> <p> Name: Francisco Fabregat Santiago <br> Institution: Institute of Advanced Materials (INAM), Universitat Jaume I, 12006 Castelló, Spain<br> ORCID: 0000-0002-7503-1245</p> <p> Name: Sixto Giménez<br> Institution: Institute of Advanced Materials (INAM), Universitat Jaume I, 12006 Castelló, Spain<br> Email: <sjulia@uji.es> <br> ORCID: 0000-0002-4522-3174</p> <p> Name: Elena Más-Marzá<br> Institution: Institute of Advanced Materials (INAM), Universitat Jaume I, 12006 Castelló, Spain<br> Email: <emas@uji.es><br> ORCID: 0000-0002-2308-0635<br> </p> <p> <br>## FILE DESCRIPTION<br>—————————<br>### Figure 1<br>-Fig1.txt : Cyclic voltammograms of Reference (black), 1LA–BiVO4 (red) and 3LA–BiVO4 (green) photoanodes measured at 20 mV s 1 in 0.1 M benzyl alcohol in acetonitrile solution with 0.1 M tetrabutylammonium perchlorate (TBAClO4) in the dark (solid lines) and under illumination (100 mW cm 2) [dashed lines].</p> <p>### Figure 2<br>-Fig2d.txt : Raman spectra of Zone A. <br>_fig2e.txt : Raman spectra of Zone B.</p> <p>### Figure 4<br>-Fig4a.txt : Nyquist plot of Reference sample and selected equivalent circuit to fit the experimental data of the Reference and LA samples.<br>-Fig4b.txt : Surface capacitance (Cs), charge transfer resistance (Rct), and photocurrent (J) of Reference BiVO4.<br>-Fig4c.txt : Density of surface states as a function of applied potential. Reference (Black), 1LA–BiVO4 (Red) and 3LA–BiVO4 (Green).</p> <p>### Figure 5<br>-Fig5a.txt : Infrared (IR)-chopped chronoamperometry measurements of Reference (Black) and 3LA-BiVO4 (green).</p> <p>### Figure S1<br>-FigS1.txt : Cyclic voltammetry peak of Ferrocene/Ferrocenium (Fc/Fc+). 1.9 mM of ferrocene was used to calibrate the applied voltage to the normal hydrogen electrode (NHE). Conditions: 100 mM of benzyl alcohol, in 0.1 M TBAClO4 in CH3CN, using BiVO4 as WE, Pt film as CE, and Ag/AgNO3 as RE.</p> <p>### Figure S2<br>-FigS2.txt : CV of Reference (black) and 1LA-BiVO4 (red) measured at scan rates of 20 mV·s-1 in a 0.1M KPi buffered aqueous solution (pH 7.8) in the dark (solid lines) and under 100 mW·cm-2 illumination (dashed lines).</p> <p>### Figure S4<br>-FigS4.txt : XRD spectra for Reference (black), 1LA-BiVO4 (red) and 3LA-BiVO4 (green) photoanodes.</p> <p>### Figure S7<br>-FigS7a.txt : Impedance spectroscopy parameters extracted from fitting the experimental data with the selected equivalent circuit showed in Figure 3. Surface capacitance, Cs. Reference (Black), 1LA-BiVO4 (Red), 3LA-BiVO4 (Green), Reference with electrodeposited BiOx on top<br>(purple). Measurements were performed under illumination at 0.1 M benzyl alcohol oxidation conditions.<br>-FigS7b.txt : Impedance spectroscopy parameters extracted from fitting the experimental data with the selected equivalent circuit showed in Figure 3. Charge Transfer Resistance, Rct. Reference (Black), 1LA-BiVO4 (Red), 3LA-BiVO4 (Green), Reference with electrodeposited BiOx on top<br>(purple). Measurements were performed under illumination at 0.1 M benzyl alcohol oxidation conditions.<br>-FigS7c.txt : Impedance spectroscopy parameters extracted from fitting the experimental data with the selected equivalent circuit showed in Figure 3. Bulk Capacitance, Cbulk. Reference (Black), 1LA-BiVO4 (Red), 3LA-BiVO4 (Green), Reference with electrodeposited BiOx on top<br>(purple). Measurements were performed under illumination at 0.1 M benzyl alcohol oxidation conditions.<br>-FigS7d.txt : Impedance spectroscopy parameters extracted from fitting the experimental data with the selected equivalent circuit showed in Figure 3. Bulk Resistance, Rbulk. Reference (Black), 1LA-BiVO4 (Red), 3LA-BiVO4 (Green), Reference with electrodeposited BiOx on top<br>(purple). Measurements were performed under illumination at 0.1 M benzyl alcohol oxidation conditions.</p> <p>### Figure S8<br>-FigS8a.txt : Comparison of Cs, Rct and the J-V as a function of the applied potential for Reference (Black).Measurements were performed under illumination at 0.1 M benzyl alcohol oxidation conditions.<br>-FigS8b.txt : Comparison of Cs, Rct and the J-V as a function of the applied potential for 1LA-BiVO4 (red). Measurements were performed under illumination at 0.1 M benzyl alcohol oxidation conditions.<br>-FigS8b.txt : Comparison of Cs, Rct and the J-V as a function of the applied potential for 3LA-BiVO4 (green). Measurements were performed under illumination at 0.1 M benzyl alcohol oxidation conditions.</p> <p>### Figure S9<br>-FigS9a.txt : Density of surface states as a function of applied potential. 1LA-BiVO4 (Red) and LT-1LA-BiVO4 (Maroon).<br>-FigS9b.txt : Steady-state photocurrent as a function of applied potential. 1LA-BiVO4 (Red) and LT-1LA-BiVO4 (Maroon).</p>
Model code and output for "Transformation Processes in the Oder Lagoon as seen from a Model Perspective"
<p>This dataset contains the numerical model output files that were used in the analysis, the numerical model input files that were used to produce the model simulation, and the specific source code for the model components presented in "Transformation Processes in the Oder Lagoon as seen from a Model Perspective", submitted to Biogeoscience.</p> <p>data1.tar is the direct diagnostic model output. data2.tar are condensed data which are used for the analysis.</p> <p>forcing.tar contains data to run the model. Most files should be placed inside a directory named INPUT/ that resides in the working directory where the model is being run. The following files should be at the top level in the working directory: data_table, diag_table, field_table, input.nml.</p> <p>For large files, a subset in time (1995) is provided for the first year of the simulation. This dataset does not include the coastdat atmospheric data, which can be downloaded directly from https://www.wdc-climate.de/ui/entry?acronym=coastDat-2_COSMO-CLM.</p> <p>src.tar contains the model source code.</p>
The response of nitrogen transformation to hydrological regime at sediment-water interface of seasonal lakes in floodplain: Insights from the Three Gorges Dam-Poyang Lake system
<p><span>This study establishes a coupled model integrating hydrodynamics and nitrogen transformation to elucidate the impacts of the hydrological regime of the Yangtze River after the operation of Three Gorges Dam.</span></p>
Calculation of R2 regression values after square root transformation of the data in intact condition of Haemaphysalis darjeeling
<p>Table: Calculation of R2 regression values after square root transformation of the data in intact condition of <em>Haemaphysalis darjeeling</em></p>
Data for "Architected print-and-plate porous electrodes for electrochemical transformations under flow"
<p>This upload contains a single ZIP archive with all the supporting information for the scientific publication "Architected print-and-plate porous electrodes for electrochemical transformations under flow." This information includes experimental data, results of numerical simulations, and g code used for 3D printing. It includes new data, including EDS mapping of filament cross-sections, that were collected during the peer-review process.</p>
Lipid-driven SRC self-association modulates its transformation capacity
<p>Data Type: SPR data, sensorgrams with reference flow cell correction.</p> <p>Data format: Comma-delimited text file </p> <p>Data Type: AFM raw data </p> <p>Data format: Binary files jpk format</p>
Direct observation of the chemical transformations in BiVO4 photoanodes upon prolonged light exposure treatments
<p>Exposing BiVO<sub>4</sub> photoanodes to light pre-treatments leads to a significant photocurrent enhancement. The interpretation given for this phenomenon until now, has not taken into consideration the chemical nature of the processes taking place within the material. Here, we present a direct observation of the chemical transformations on the BiVO<sub>4</sub> surface upon prolonged light exposure and their implications on the photoelectrochemical oxidation of benzyl alcohol. Upon the light-aging treatment, structural characterization of our BiVO<sub>4</sub> shows a chemical segregation process of Bi species toward the surface of the photoanode. We found that this observation correlates with the formation of intra-band gap electronic states associated with oxygen vacancies, observed by impedance spectroscopy. Continuous infra-red wavelength excitation allowed us to monitor such oxygen vacancy states and, for the first time, to report infra-red steady-state photocurrent production in BiVO<sub>4</sub>. Our results highlight the significance of the chemical nature of light-induced phenomena on metal oxide semiconductors and its implications when developing photosensitizers for photoelectrochemical applications</p>
In situ NMR to follow starch transformations in food
<p>In situ NMR to follow starch transformations in food</p>
Dataset for article "Measurement report: Molecular characteristics of cloud water in southern China and insights into aqueous-phase processes from Fourier Transform Ion Cyclotron Resonance Mass Spectrometry"
<p>This dataset is the result of molecular composition of cloud water collected in southern China obtained by ESI FT-ICR MS. This dataset is for the article "Measurement report: Molecular characteristics of cloud water in southern China and insights into aqueous-phase processes from Fourier Transform Ion Cyclotron Resonance Mass Spectrometry" published in Atmospheric Chemistry and Physics by Sun et al. (2021).</p>
Rate-and-state friction parameters for "Frictional Characteristics of Oceanic Transform Faults: Progressive Deformation and Alteration Controls Seismic Style"
<p>Rate-and-state friction parameters to accompany "Frictional Characteristics of Oceanic Transform Faults: Progressive Deformation and Alteration Controls Seismic Style"</p>
Raw data for the article "Tosyloxybenziodoxolone: A Platform for Performing the Umpolung of Alkynes in One-pot Transformations"
<p>Raw NMR and MS data for the article "Tosyloxybenziodoxolone: A Platform for Performing the Umpolung of Alkynes in One-pot Transformations" published in Organic Letters, DOI: </p> <p><a href="https://doi.org/10.1021/acs.orglett.1c03771">https://doi.org/10.1021/acs.orglett.1c03771</a></p> <p>The number of the folders correspond to compounds numbers in the article. All details concerning conditions and equipment for measurements can be found in the supporting information of the article.</p>
Mercury isotopic compositions in fine particles and offshore surface seawater in a coastal area of East China: Implication for Hg sources and atmospheric transformations
<p>Original data:</p> <p>sheet 1: PHg concentration</p> <p>sheet2: Chemical components in PM2.5</p> <p>sheet3: PHg isotopes</p> <p>sheet4: Seawater Hg isotopes</p>
Dataset for paper "GRN-Transformer: Predicting Single Cell Gene Regulatory Network based on Axial Transformer"
<p>Dataset for paper "GRN-Transformer: Predicting Single Cell Gene Regulatory Network based on Axial Transformer"</p>
Highly Efficient Agrobacterium rhizogenes-mediated Genetic Transformation Technology Bypassing Tissue Culture in Citrus
<p>Highly efficient genetic transformation technology is of great significance for the gene function analysis and precision breeding of crops. However, the most commonly used genetic transformation technology mediated by <em>Agrobacterium tumefaciens</em> in plants especially xylophyta is time-consuming and inefficient, which seriously hinders the progress of gene function analysis. In this study, a simple and highly efficient genetic transformation technology mediated by <em>Agrobacterium rhizogenes</em> bypassing tissue culture is described. Only 2~8 weeks were required for the whole workflow, with an average successful transformation ratio of 57% in shoots from adult plants. By using this technology, we successfully transferred plasmids containing gRNA, Cas9, and other exogenous genes into citrus, and achieved genome editing on target loci and overexpressed multiple foreign genes at the same time. In this method, a student could simultaneously conduct genome editing experiment using 10 plasmids targeting different genome positions and finally obtained all the corresponding transformants with target DNA knocked out, indicating that <em>A. rhizogenes</em>-mediated genome editing technology is highly efficient. In addition, <em>A. rhizogenes</em> can be used for direct viral vector inoculation on citrus bypassing the step of viron enrichment in tobacco, which facilitates the experiment operation of virus-induced gene silence (VIGS) and foreign gene expression. In summary, we established a highly efficient genetic transformation technology bypassing tissue culture in citrus, which can be used for genome editing, gene overexpression, and virus-mediated gene function analysis. We anticipate that by removing high cost, heavy workload, long experiment period and other technical obstacles, this genetic transformation technology will be a valuable tool for routine investigation of endogenous and exogenous genes in citrus.</p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.