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5,805 results for “Data model”
NPP Multi-Biome: NPP and Driver Data for Ecosystem Model-data Intercomparison, R2
This data set represents a refined set of global net primary productivity (NPP) estimates and model driver data that are the results of the Ecosystem Model-Data Intercomparison (EMDI) workshop review and outlier analyses undertaken to assess the accuracy of global model forecasts of terrestrial carbon cycling. EMDI builds upon the accomplishments of the original worldwide synthesis of NPP measurements and associated model driver data prepared by the Global Primary Production Data Initiative (GPPDI) (Olson et al., 2001; 2013). The EMDI review and analyses produced NPP, climate, NDVI, land cover, vegetation, and soil data for a sub-set of GPPDI data: 81 Class A sites, 933 Class B sites, and 3,855 Class C 0.5-degree cell grids. Class A sites represent well-documented study sites that have complete above- and below-ground NPP measurements. Class B sites represent more numerous extensive sites with less documentation and site-specific information available. Class C cells represent estimates of NPP for 0.5-degree grid cells for which inventory, modeling, or remote-sensing tools were used to scale up the point measurements. The data files are in comma-separated-value (.csv) format: • 18 data files for Class A sites which includes 12 comma-separated files (*.csv) and six compressed files (*.zip)• 11 data files for Class B sites in comma-separated format (*.csv).•9 data files for Class C grid cells in comma-separated format (*.csv).This document and a companion file (Olson et al., 2001) describe the compilation of NPP estimates under the GPPDI and the EMDI review and outlier analyses that produced this refined set of NPP estimates and model driver data. Revision Notes: This data set has been revised to correct previously reported NPP estimates for three OTTER Transect sites, USA, in the Class A NPP data file. Please see the Data Set Revisions section of this document for detailed information.
NACP Regional: Gridded 1-deg Observation Data and Biosphere and Inverse Model Outputs
This data set contains standardized gridded observation data, terrestrial biosphere model output data, and inverse model simulations of carbon flux parameters that were used in the North American Carbon Program (NACP) Regional Synthesis activities. The data set provides five observation data files (MODIS GPP, MODIS NPP, FIA forest biomass/forest area, NASS crop NPP, and NASS agricultural land fraction) and simulation results from 18 terrestrial biosphere models (TBM) (28 variables; 114 files) and seven inverse models (IM) (two variables; 8 files). To produce this data set, the NACP Modeling and Synthesis Thematic Data Center (MAST-DC) resampled original model simulation results and observation measurement data to 1-degree spatial resolution for North American region, interpolated into monthly or yearly temporal resolution, and reformatted into Climate and Forecast (CF) convention compatible netCDF format. This data set is related to two other processed regional data sets (i.e., NACP Regional: Supplemental Gridded Observations, Biosphere and Inverse Model Outputs; and NACP Regional: National Greenhouse Gas Inventories and Aggregated Gridded Model Data) and the originally-submitted NACP Regional: Original Observation Data and Biosphere and Inverse Model Outputs.
NASA Ocean Biogeochemical Model assimilating satellite chlorophyll data global monthly VR2017 (NOBM_MON) at GES DISC
This is the assimilated monthly data from NASA Ocean Biogeochemical Model (NOBM). The NOBM is a comprehensive, interactive ocean biogeochemical model coupled with a circulation and radiative model in the global oceans (Gregg and Casey, 2007). It spans the domain from -84 to 72 degree latitude in increments of 1.25 degree longitude by 2/3 degree latitude, including only open ocean areas where bottom depth >200m. NOBM contains 4 phytoplankton groups, 4 nutrient groups, a single herbivore group, and 3 detrital pools, and the major ocean carbon components, dissolved organic and inorganic carbon (DOC and DIC).
GEOS-5 FP-IT 3D Time-Averaged Model-Layer Assimilated Data Geo-Colocated to OMI/Aura VIS 1-Orbit L2 Swath 13x24km V4 (OMVFPMET) at GES DISC
The GEOS-5 FP-IT 3D Time-Averaged Model-Layer Assimilated Data Geo-Colocated to OMI/Aura VIS 1-Orbit L2 Swath 13x24km (OMVFPMET) product provides selected meteorlogical fields from the GEOS-5 Forward Processing for Instrument Teams (FP-IT) assimilated product produced by the Global Modeling and Assimilation Office (GMAO) co-located in space and time with the OMI UV-2 swath.The fields in this product include layer pressure thickness, surface pressure, vertical temperature profiles, surface potential, and mid-layer pressure along with geolocation info. The OMI team also provides a corresponding product for the OMI UV2 swath, OMUFPMET. The OMI ancillary products were developed to provide supplementary information for use with the OMI collection 4 L1B data sets. The original GEOS-5 FP-IT data are reported on a 0.625 deg longitude by 0.5 deg latitude grid, whereas the OMI UV-2 spatial resolution is 13km x 24km at nadir.The OMVFPMET files are in netCDF4 format which is compatible with most netCDF and HDF5 readers and tools. Each file is approximately 45mb in size. The lead for this product is Zachary Fasnacht of SSAI. Joanna Joiner is the responsible NASA official.
Affymetrix Gene Expression array data for Tcl1 mouse model samples
GEO Series GSE118345. Mus musculus. 8 samples. Type: Expression profiling by array.
Gene expression profiling using RNA-Seq data of 12 mouse syngeneic tumor models treated with lenvatinib
GEO Series GSE281579. Mus musculus. 107 samples. Type: Expression profiling by high throughput sequencing.
New Cell lines Expanding the Diversity of Ewing Sarcoma Models – WGS Data
GEO Series GSE289062. Homo sapiens. 11 samples. Type: Other.
H3K9ac data from mouse models suggest structural changes in the murine brain epigenome that involve the nuclear lamina
GEO Series GSE97560. Mus musculus. 45 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Reproducibility of PD patient-specific midbrain organoid data for in vitro disease modelling (passages)
GEO Series GSE287566. Homo sapiens. 48 samples. Type: Expression profiling by high throughput sequencing.
Integration of Thermal Proteome Profiling with phosphoproteomic and transcriptomic data via mechanistic network models decodes the molecular response to PARP inhibition
GEO Series GSE243208. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Modeling gene regulation from matched expression and chromatin accessibility data
GEO Series GSE98479. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing; Other.
Gene expression data from BM1 (1833) tumors that are wild type or overexpressing RKIP in a xenograft mouse model
GEO Series GSE128983. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing.
HALO: Hierarchical Causal Modeling for Single Cell Multi-Omics Data
GEO Series GSE302151. Homo sapiens. 31 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
High-throughput data and modeling reveal insights into the mechanisms of cooperative DNA-binding by transcription factor proteins
GEO Series GSE171735. Homo sapiens; synthetic construct. 5 samples. Type: Other.
Modelling of H3K4me3 histone modification data identifies signalling molecules that improve cell maintenance and conversion
GEO Series GSE155564. Homo sapiens. 27 samples. Type: Expression profiling by high throughput sequencing.
Affymetrix SNP Data array data of pancreatic cancer PDX models
GEO Series GSE196183. Homo sapiens. 20 samples. Type: SNP genotyping by SNP array; Genome variation profiling by SNP array.
Microarray data from simple and effective differentiation-switching model using long-term-expanded mammary primary cells
GEO Series GSE254887. Homo sapiens. 2 samples. Type: Expression profiling by array.
Multi Omics analysis of fibrotic kidneys in two mouse models (Unilateral ureter obstruction (UUO) model MS data set)
GEO Series GSE126182. Mus musculus. 10 samples. Type: Protein profiling by Mass Spec.
MicroRNA-seq data of aortas from chronic kidney disease (CKD) induced vascualr calcification mouse model
GEO Series GSE159830. Mus musculus. 4 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Genomic data from 48 Asian gastric patient-derived xenograft (PDX) models, 7 Asian gastric patient tumors and the 8 corresponding normal tissues
GEO Series GSE115674. Homo sapiens. 62 samples. Type: Genome variation profiling by SNP array.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.