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1,819 results for “Experimental data”
Raw experimental data for hydrated arsenic(III)-oxide intercalation compound with ammonium chloride including raw diffraction data for CSD 2202825
<p>pg171_WW4_NH4ClAs2O3H2O.7z: raw diffraction data for CSD 2202825</p> <p>PXRD.7z: raw powder X-ray diffraction pattern for a sample containing intercalate <strong>Y<sub>NH<sub>4</sub>Cl</sub></strong> and its dehydrated counterpart</p> <p>WW9_TG-MS_DSC.7z: raw TG-MS and DSC data for intercalate <strong>Y<sub>NH<sub>4</sub>Cl</sub></strong></p> <p>15NssNMR.7z: raw ssNMR data for intercalates <strong>Y<sub>NH<sub>4</sub>Cl</sub></strong>, <strong>P<sub>NH<sub>4</sub>Br</sub></strong> and P<strong><sub>NH<sub>4</sub>I</sub></strong></p> <p> </p>
Data from: Experimental assessment of downstream environmental DNA patterns under variable fish biomass and river discharge rates
<p><span>The development of environmental DNA (eDNA) methods towards implementation as a cost-effective, nonlethal tool for fish biomonitoring in lotic environments requires insights on the temporal and spatial distribution of eDNA in river systems. Yet, little is known on how downstream eDNA dispersal is affected by the combination of river discharge and source biomass effects. In this study, we aimed at unravelling the effect of source- and system-specific processes on the stream reach of eDNA. We used a longitudinal cage study in two river sections characterized by a significantly different discharge rate, where two invasive and two native fish species were introduced under two contrasting biomass treatments. Using droplet digital PCR (ddPCR) analyses, we found that eDNA concentrations become strongly reduced 2 km downstream from the source, an effect that is strengthened with increasing river discharge and coinciding dilution effects. Higher discharge rates resulted in equal or even higher detection probabilities at increasing distance from the source. The introduction of high fish stock biomass resulted in an increase of eDNA concentrations, as well as detection probabilities and in parallel reduced the stochasticity of the measurements. A peak in eDNA concentrations at a downstream distance ranging between 300 m and 2 km confirms the complexity of plume-shaped downstream eDNA patterns. Our results showed interspecific variation in eDNA emission and suggest species-specific differences in eDNA persistence. This study underlines the impact of both river discharge rate and source biomass on downstream eDNA detection and dispersal patterns. </span></p>
Data and code for: Social phenotype-dependent selection of social environment in wild great and blue tits: An experimental study
<p>There is growing evidence that individuals actively assess the match between their phenotype and their environment when making habitat choice decisions (so-called matching habitat choice). However, to our knowledge, no studies have considered how the social environment may interact with social phenotype in determining habitat choice, despite habitat choice being an inherently social process and growing evidence for individual variation in sociability. We conducted an experiment using wild great and blue tits to understand how birds integrate their social phenotype and social environment when choosing where and how to feed. We used programmable feeders to (i) record social interactions and estimate social phenotype and (ii) experimentally manipulate the local density experienced by birds of differing social phenotype. By tracking feeder usage, we estimated how social environment and social phenotype predicted feeder choice and feeding behaviour. Both social environment and social phenotype predicted feeder usage, but a bird's decision to remain in a particular social environment did not depend on their social phenotype. In contrast, for feeding behaviour, responses to the social environment depended on social phenotype. Our results provide rare evidence of matching habitat choice and shed light on the dependence of habitat choice on between-individual differences in social phenotype.</p>
Experimental data for the paper Automated reasoning for knot semigorups and \pi-orbifold groups of knots
<p>This upload contains experimental data to supplement the <br> paper Automated reasoning for knot semigroups and \pi-orbifold <br> groups of knots, by Alexei Lisitsa and Alexei Vernitski, 2017 </p> <p>ALTERNATING-SG.zip Proofs by Prover9 for Section 3, (4-plats) <br> KS_Models.zip Models found by Mace4 for Section 2.3 (Non-cyclic knot semigorups: small knots) <br> PROVING-TRIVIAL.zip Proofs by Prover 9 for Section 2.2 (Cyclic knot semigroups) <br> </p>
FDHMF: Experimental Loop Recirculation Data Set - 250G
<p>Data set containing experimental results on the propagation of frequency-domain hybrid modulation formats (FDHMF) optical signals over pure silica core fiber (PSCF) inside a recirculating loop. The net bit-rate is fixed at 250G.</p>
Experimental data for Understanding frictional behavior in fascia tissues through tribological modeling and material substitution
<p>Dataset (experimental data) for publication titled: Understanding frictional behavior in fascia tissues through tribological modeling and material substitution. The article deals with the development of a tribological model of fascia. As in the paper, the dataset is divided into the three phenomena studied: Effect of geometry, Models, Hyaluronic acid - model E. </p>
Experimental data for "An End-to-End Coding Scheme for DNA-Based Data Storage With Nanopore Sequenced Reads"
<p>The experimental dataset used in "An End-to-End Coding Scheme for DNA-Based Data Storage With Nanopore Sequenced Reads."</p> <p>A set of 91,766 150-nt oligos were synthesised with GenScript (oligos.fasta). Each oligo consists of a pseudo-random 110-nt payload flanked by 20-nt primers at each end. The strands are split in three roughly equal groups (two groups of 30,589 and one group of 30,588). Each group has a dedicated primer pair for targeted PCR amplification (the primer pairs used for amplification are provided in primers_synthesis.fasta). The pseudo-random payload was designed to avoid primer-payload collisions.</p> <p>For each file, a sample from the synthesised pool was PCR amplified using the corresponding primer pair and sequenced using Oxford Nanopore Technologies MinION sequencing device following the standard library preparation protocol for amplicon DNA. The raw reads were basecalled using guppy, either in fast- ("acc-false") or high-accuracy ("acc-true") regime. The basecaller generated two groups of reads—"passQ-true" for the reads that passed the quality-score threshold of 8 and "passQ-false" for those that did not. For each group of reads, a BLAST-based fuzzy search for primer sequences was performed and, based on the resulting alignments, the segments containing the correct primer pairs and located at a distance of 150+-15nt were extracted (separately for forward and reverse-complemented reads). The segments are then assigned to the closest synthesized strand based on Levenshtein distance. The resulting clusters are used to estimate the parameters of the end-to-end DNA storage channel model and to test the proposed error-correction scheme.</p> <p>The archive clustered_read_segments.tar.gz contains 12 sub-archives, for each file (0,1,2), accuracy ("acc-true" or "acc-false"), and Q-score ("passQ-true" or "passQ-false"). Within each sub-archive, there are two folders (one for forward read segments and one for backward read segments), and each folder contains two files: one for the reference synthesised (or "transmitted") sequences that correspond to the file in question ("TX__" — e.g., "TX__file=0_accBaCa=true_passQ=true_filter=true_forward_.txt") and another file for the sequenced (or "received") segment clusters ("RX__" — e.g., "RX__file=0_accBaCa=true_passQ=true_filter=true_forward_.txt"). The received clusters in the "RX__" file are ordered in correspondence with the synthesised sequences in the "TX__" file, and a line "===============================" is used as a separator.</p>
Protein sialylation affects the pH-dependent binding of ferric ion to human serum transferrin - experimental data
<p>Experimental data for a paper entitled <em>Protein sialylation affects the pH-dependent binding of ferric ion to human serum transferrin</em> (<a href="https://doi.org/10.1039/D4DT01311E">https://doi.org/10.1039/D4DT01311E</a>).</p> <p> </p> <p>Separate files are provided with the following information:</p> <p> </p> <p>1. Experimental data:</p> <p>a) "Fluorescence + IFE corrections" worksheet contains the fluorescence data used for the subsequent calculations.</p> <p>Fluorescence values were measured in triplicate the Tecan Spark M10 multimode microplate reader using multiple <em>z</em>-positions (distance from the lens to the bottom of the microplate well) and baseline correction. </p> <p>Fluorescence was corrected for the inner filter effect and normalized as described in the Supplementary Information (citation data will be updated pending publication).</p> <p>Additional information on the <em>z</em>-position inner filter effect correction method (ZINFE) can be found here: <a title="DOI URL" href="https://doi.org/10.1021/acs.analchem.2c01031" target="_blank" rel="noopener">https://doi.org/10.1021/acs.analchem.2c01031</a>.</p> <p>b) "Absorbance spectra" worksheet contains the averaged absorbance spectra and absorbance spectra of each replicated measurement.</p> <p> </p> <p>2. Titrations</p> <p>The dependence of the measured fluorescence on the concentration of added FeNTA was modelled according to the binding polynomial for two iron binding sites (<a href="https://doi.org/10.1016/S0076-6879(08)04205-5" target="_blank" rel="noopener">https://doi.org/10.1016/S0076-6879(08)04205-5</a>).</p> <p>The results for all titrations are provided as separate files with 4 worksheets each: titration data, calculation of the free iron according to the binding polynomial (<a href="https://doi.org/10.1039/d3ay01261a" target="_blank" rel="noopener">https://doi.org/10.1039/d3ay01261a</a>), the least squares calculation of the fluorescence according to the binding polynomial for each data point using the solver routine in Excel, and the “jackknife” procedure for estimating the uncertainties of the titration parameters (<a href="https://doi.org/10.1021/ed075p119" target="_blank" rel="noopener">https://doi.org/10.1021/ed075p119</a>). </p> <p>Separate files are provided for the determination of the active protein fraction and the fluorescence signal corresponding to the complete saturation of the binding sites.</p> <p> </p> <p>3. Results and sensitivity analyses:</p> <p>Local sensitivity analysis was performed to assess the impact of concentration fluctuations on the uncertainties associated with the results.</p> <p>Concentrations were adjusted to both higher (H) and lower (L) estimates, based on adding or subtracting one standard deviation from the average concentrations, creating four scenarios: LL, LH, HL, HH.</p> <p>The results for all titrations are provided as separate files with 5 worksheets each: the results obtained directly from titration data and the results obtained by all 4 scenarios.</p> <p>Standard deviations of the obtained titration parameters were adjusted using this expanded set.</p> <p> </p> <p>4. All data used for tables and plots in the manuscript, including statistical analyses and miscellaneous data:</p> <p>a) "Tables" worksheet contains all tables in the manuscript and the Supplementary Information (citation data will be updated pending publication),</p> <p>b) "fsp" worksheet contains the data on the pH-dependence of the site preference factor, <em>f</em>sp (<a href="https://doi.org/10.1042/bj1930717" target="_blank" rel="noopener">https://doi.org/10.1042/bj1930717</a>),</p> <p>c) "ΔΔrG" worksheet contains all ΔΔr<em>G</em> values reported in the manuscript,</p> <p>d) "Error propagation" contains the error propagation calculations for all values reported in the manuscript.</p> <p> </p>
Stylidium armeria experimental gene flow data
<p>Gene flow can have rapid effects on adaptation and is an important evolutionary tool available when undertaking biological conservation and restoration. This tool is underused partly because of the perceived risk of outbreeding depression and loss of mean fitness when different populations are crossed. In this article we briefly review some theory and empirical findings on how genetic variation is distributed across species ranges, describe known patterns of gene flow in nature with respect to environmental gradients, and highlight the effects of gene flow on adaptation in small or stressed populations in challenging environments (e.g., at species range limits). We then present a case study involving crosses at varying spatial scales among mountain populations of a trigger plant (<em>Stylidium armeria</em>:<em> </em>Stylidiaceae) in the Australian Alps to highlight how some issues around gene flow effects can be evaluated. We found evidence of outbreeding depression in seed production at greater geographic distances. Nevertheless, we found no evidence of maladaptive gene flow effects in likelihood of germination, plant performance (size), and performance variance, suggesting that gene flow at all spatial scales produces many offspring with high adaptive potential. This case study demonstrates a path to evaluating how increasing sources of gene flow in managed wild and restored populations could identify some offspring with high fitness that could bolster the ability of populations to adapt to future environmental changes. We suggest further ways in which managers and researchers can act to understand and consider adaptive gene flow in natural and conservation contexts under rapidly changing conditions.</p>
DSA-380 experimental data and a non-linear model in Matlab
<p><span>Experimental data of the DSA 380 pantograph is provided in a dataset and the Matlab files neccesary to simulate a model of the pantograph. Readme available.</span></p>
Replication data for "Learning When to Quit: An Empirical Model of Experimentation in Standards Development"
<p>This is the replication data for the article "Learning When To Quit: An Empirical Model of Experimentation in Standards Development," published in the <em>American Economic Journal: Microeconomics</em>. </p> <p>A detailed description of the data construction can be found in the Data Appendix (Section E in the Online Appendix published with the article's supplementary material).</p> <p>The file _readme-LWTQ-data.xls contains a description of the variables.</p> <p>If you use the data, cite the paper!</p> <p><strong>Ganglmair, Bernhard, Timothy Simcoe, and Emanuele Taranntino (2024): "Learning When To Quit: An Empirical Model of Experimentation in Standards Development," <em>American Economic Journal: Microeconomics</em>, forthcoming<em>.</em></strong></p>
Extracted experimental data for research paper titled "Micro-thermomechanical Modeling of Rocks with Temperature-dependent Friction and Damage Laws"
<p>This repository contains the experimental data on stress-strain curves extracted from the following original publications for constitutive model validation in our manuscript.</p> <p>[1] Jinping marble: Zhong, Y. Y. (2017). Research on mechanical properties of marble and the effects on rock burst under thermal-mechanical coupling (in Chinese) (Master’s thesis, Chengdu University of Technology). doi: 10.26986/d.cnki.gcdlc.2017.000109.</p> <p>[2] Beibei sandstone: Long, L. J. (2021). Study on mechanical and seepage properties of sandstone under the coupling of temperature-seepage-stress (in Chinese) (Doctoral dissertation, Chongqing University). doi: 10.27670/d.cnki.gcqdu.2021.001009.</p> <p>[3] Gongjue granite: Zhou, H. Y., Liu, Z. B., Shen, W. Q., Feng, T., & Zhang, G. Z. (2022). Mechanical property and thermal degradation mechanism of granite in thermal-mechanical coupled triaxial compression. International Journal of Rock Mechanics and Mining Sciences, 160, 105270. doi: 10.1016/j.ijrmms.2022.105270.</p>
Data for Experimental Assessment of Bowed-String Transient Playability Limits
<p>This dataset provides the raw recordings and analysis code used in the research article titled “Assessing Playability Limits of Bowed-String Transients using Experimental Measurements” (currently under review in <em>Acta Acustica</em>). The data explores the characteristics of bow-string interaction during transients, focusing on achieving successful attacks (Helmholtz motion). The recordings capture bridge force signals at different bow forces and bow accelerations.</p> <p>This dataset offers resources for researchers interested in:</p> <ul> <li>Investigating bow-string interaction phenomena</li> <li>Analysing characteristics of bowed-string transients</li> <li>Developing or validating models of bowed-string instruments</li> </ul> <p><strong>Data Organization:</strong></p> <p>The main folder of this repository contains the following:</p> <ul> <li><strong>raw_data:</strong> This subfolder stores the raw multi-channel audio recordings (.wav format) captured during the measurement sessions (a more detailed description later).</li> <li><strong>main.m:</strong> This script serves as the central processing unit for the analysis. It guides the processing of raw data from the "raw_data" folder, including: <ul> <li>Feature extraction: Calculates relevant features related to bow-string interaction in transients, such as transient time and friction coefficients.</li> <li>Guettler diagram generation: Creates Guettler diagrams, which are visualizations commonly used in bowed-string research.</li> </ul> </li> <li><strong>Additional Analysis Scripts:</strong> Alongside the "main.m" script, several other MATLAB scripts are provided for further in-depth analysis and visualisation of results. These scripts can be used to: <ul> <li><strong>averaged_transient_time_gd.m:</strong> Computes and analyzes the average pre-Helmholtz transient time across multiple repetitions (e.g., six repetitions).</li> <li><strong>waveform_examples.m:</strong> Plot examples of waveforms of bridge force captured during the experiments.</li> <li><strong>experimental_theoretical_limits.m:</strong> Analyzes and visualizes the theoretical limits of playability in comparison to the experimentally determined boundaries.</li> <li><strong>theoretical_limits.m:</strong> Visualizes the theoretical limits of playability computed with different coefficient of frictions.</li> <li><strong>string_parameters_from_pluck_response.m:</strong> Extracts string properties, such as tension or stiffness, from the analysis of pluck responses.</li> <li><strong>performance_setup.m:</strong> Assesses the overall performance and stability of the experimental setup.</li> </ul> </li> <li><strong>Publication-related scripts:</strong> Some additional scripts are present, named descriptively (e.g., "guettler_example.m", "gd_different_betas.m", or "comparison_repetitions.m"). These scripts were used specifically for generating figures presented in the research publication.</li> </ul> <p><strong>Note:</strong></p> <p>The specific functionalities of each additional script are likely explained within the code itself. For detailed information about how each script works, it's recommended to consult the code comments within the MATLAB scripts.</p> <p><strong>Data Organization of raw_data:</strong> The raw data is stored within a folder named “raw_data”. This folder contains subfolders for each measurement session, organized as follows:</p> <ul> <li><strong>first_repetitions</strong>: contains the repetitions of measurements done in consecutive days; <strong>after_dismounting:</strong> measurements done one month apart from the first repetitions; <strong>different_betas:</strong> measurements done at different position along the string;</li> <li><strong>Subfolder Naming:</strong> Subfolders are named using the date of the measurement session (YYYY-MM-DD format). If the recordings within a session were captured in reverse order, the subfolder name will include an "r" suffix (e.g., YYYY-MM-DD_r).</li> <li><strong>Data Content:</strong> Each subfolder contains the following: <ul> <li><strong>Raw Recordings (.wav):</strong> The primary data consists of multi-channel audio recordings (.wav format) captured during the measurement session. These recordings contain 11 channels of sensor data as described in the README.</li> <li><strong>Feature Files:</strong> In the subfolders, you will find additional files containing extracted features from the raw recordings. These features might include transient time, friction coefficients, or other characteristics calculated using the provided MATLAB scripts.</li> </ul> </li> </ul> <p><strong>Data Accessibility:</strong></p> <p>The raw recordings and code are provided in their original format to ensure transparency and facilitate reusability for further research on playability of bowed-string.</p> <p><strong>Additional Notes:</strong></p> <ul> <li>The code requires MATLAB software to run. Additional Toolboxes: Statistics and Machine Learning Toolbox, Optimization Toolbox, Signal Processing Toolbox.</li> </ul> <p> </p>
Spectroscopic and Interferometric Sum-Frequency Imaging of Strongly Coupled Phonon Polaritons in SiC Metasurfaces - Experimental and Simulation Data
<p>Data repository supporting the manuscript 'Spectroscopic and Interferometric Sum-Frequency Imaging of Strongly Coupled Phonon Polaritons in SiC Metasurfaces'.</p>
Fig.6 in The Experimental Data On Sun-Basking Activity Of European Pond Turtle Emys Orbicularis In Natural Climate In Latvia: Dynamics And Correlation With The Meteorological Factors
Fig.6. Daily dynamics of sun-basking activity of Emys orbicularis.
Fig.1 in The Experimental Data On Sun-Basking Activity Of European Pond Turtle Emys Orbicularis In Natural Climate In Latvia: Dynamics And Correlation With The Meteorological Factors
Fig.1. The schema of the experimental out-door terrarium.
Data from: Experimental increase in fecundity causes upregulation of fecundity and body maintenance genes in the fat body of ant queens
<p>In most organisms, fecundity and longevity are negatively associated and the molecular regulation of these two life history traits is highly interconnected. In addition, nutrient intake often has opposing effects on lifespan and reproduction. In contrast to solitary insects, the main reproductive individual of social hymenopterans, the queen, is also the most long-lived. During development, queen larvae are well-nourished, but we are only beginning to understand the impact of nutrition on the queens' adult life and the molecular regulation and connectivity of fecundity and longevity. Here, we used two experimental manipulations to alter queen fecundity in the ant <em>Temnothorax rugatulus</em> and investigated associated changes in fat body gene expression. Egg removal triggered a fecundity increase, leading to expression changes in genes with functions in fecundity such as oogenesis and body maintenance. Dietary restriction lowered the egg production of queens and altered the expression of genes linked to autophagy, Toll signalling, cellular homeostasis, and immunity. Our study reveals that an experimental increase in fecundity causes the co-activation of reproduction and body maintenance mechanisms, shedding light on the molecular regulation of the link between longevity and fecundity in social insects.</p>
Hydrologic data from long-term research catchments at the Santa Rita and Jornada Experimental Ranges
<p>This datasets contains ecohydrological data collected for the research catchments at the Santa Rita Experimental Range (SRER, 31.817° N, -110.851° W) in southern of Arizona and the Jornada Experimental Range (JER, 32.585° N, -106.603° W) in southern New Mexico. The SRER catchment correspond to a mesquite savanna of the Sonoran Desert and the JER catchment is a mixed shrubland of the Chihuahuan Desert.</p> <p>Dataset includes the following ecohydrological variables at a daily scale:</p> <ul> <li>Year of measurement.</li> <li>Day of year (DOY) of measurement.</li> <li>Precipitation (<em>P</em>).</li> <li>Evapotranspiration (<em>ET</em>).</li> <li>Runoff (<em>Q</em>).</li> <li>Soil moisture (<em>SM</em>).</li> <li>Net Radiation (<em>R<sub>n</sub></em>).</li> <li>Sensible heat flux (<em>H</em>).</li> <li>Latent heat flux (<em>λET</em>).</li> <li>Gross primary production (<em>GPP</em>).</li> <li>Ecosystem respiration (<em>R<sub>eco</sub></em>).</li> <li>Net ecosystem exchange (<em>NEE</em>).</li> <li>Air Temperature (<em>Tair</em>).</li> <li>Relative Humidity (<em>RH</em>).</li> <li>Vapour Pressure Deficit (<em>VPD</em>).</li> </ul> <p>Please cite the next data note together with the dataset:</p> <p>Vivoni, E. R., Perez-Ruiz, E. R., Keller, Z. T., Escoto, E. A., Templeton, R. C., Templeton, N. P., Anderson, C. A., Schreiner-McGraw, A. P., Mendez-Barroso, L. A., Robles-Morua, A., Scott, R. L., Archer, S. R., Peters, D. P. C. 2021. Long-term Research Catchments to Investigate Shrub Encroachment in the Sonoran and Chihuahuan Deserts: Santa Rita and Jornada Experimental Ranges. <em>Hydrological Processes</em>. 35: e14031. <a href="https://urldefense.com/v3/__http://doi.org/10.1002/hyp.14031__;!!IKRxdwAv5BmarQ!OTbdNyLUWzTumWFs0u8j8dW3TT9O3UzM6XrcR-ReiWzf7vxHHKdNTKy8wR27fiHR$">http://doi.org/10.1002/hyp.14031</a></p> <p>This new version incudes three new variables (<em>Tair</em>, <em>RH</em> and <em>VPD</em>), and some carbon and water fluxes were updated to match data used in publications 1 and 2.</p> <p>Related publications:</p> <ol> <li>Perez-Ruiz, E.R., Vivoni, E.R., and Sala, O.E. 2022. <a href="https://esajournals.onlinelibrary.wiley.com/doi/10.1002/ecs2.4189" target="_blank" rel="noreferrer noopener">Seasonal Carryover of Water and Effects on Carbon Dynamics in a Dryland Ecosystem</a>. <em>Ecosphere.</em> 13(7): e4189.</li> <li>Vivoni, E.R., Perez-Ruiz, E.R., Scott, R.L., Naito, A.T., Archer, S.R., Biederman, J.A., and Templeton, N.P. 2022. <a href="http://www.sciencedirect.com/science/article/pii/S0168192321004494" target="_blank" rel="noreferrer noopener">A Micrometeorological Flux Perspective on Brush Management in a Shrub-encroached Sonoran Desert Grassland</a>. <em>Agricultural and Forest Meteorology</em>. 313: 108763.</li> <li>Schreiner-McGraw, A.P., and Vivoni, E.R. 2018. <a href="http://agupubs.onlinelibrary.wiley.com/doi/10.1029/2018WR022842">On the Sensitivity of Hillslope Runoff and Channel Transmission Losses in Arid Piedmont Slopes.</a> <em>Water Resources Research</em>. 54(7): 4498-4518.</li> <li>Schreiner-McGraw, A.P., and Vivoni, E.R. 2017. <a href="http://onlinelibrary.wiley.com/doi/10.1002/ecs2.2000/full">Percolation Observations in an Arid Piedmont Watershed and Linkages to Historical Conditions in the Chihuahuan Desert.</a> <em>Ecosphere</em>. 8(11): e02000, <a href="http://dx.doi.org/10.1002/ecs2.2000">http://dx.doi.org/10.1002/ecs2.2000</a></li> <li>Anderson, C.A., and Vivoni, E.R. 2016. <a href="http://onlinelibrary.wiley.com/wol1/doi/10.1002/2015WR018016/abstract">Impact of Land Surface States within the Flux Footprint on Daytime Land-Atmosphere Coupling in Two Semiarid Ecosystems of the Southwestern U.S.</a> <em>Water Resources Research.</em> 52: 4785-4800.</li> <li>Schreiner-McGraw, A.P., Vivoni, E.R., Mascaro, G., and Franz, T.E. 2016. <a href="http://www.hydrol-earth-syst-sci.net/20/329/2016/hess-20-329-2016.html">Closing the Water Balance with Cosmic-ray Soil Moisture Measurements and Assessing Their Relation with Evapotranspiration in Two Semiarid Watersheds.</a> <em>Hydrology and Earth System Sciences</em>. 20: 329-345.</li> <li>Pierini, N.A., Vivoni, E.R., Robles-Morua, A., Scott, R.L., and Nearing, M.A. 2014. <a href="http://onlinelibrary.wiley.com/doi/10.1002/2014WR015781/abstract">Using Observations and a Distributed Hydrologic Model to Explore Runoff Threshold Processes Linked with Mesquite Encroachment in the Sonoran Desert.</a> <em>Water Resources Research</em>. 50(10): 8191–8215.</li> <li>Templeton, R.C., Vivoni, E.R., Méndez-Barroso, L.A., Pierini, N.A., Anderson, C.A., Rango, A., Laliberte, A.S., and Scott, R.L. 2014. <a href="http://www.sciencedirect.com/science/article/pii/S0022169413008718">High-Resolution Characterization of a Semiarid Watershed: Implications on Evapotranspiration Estimates.</a> <em>Journal of Hydrology</em>. 509: 306-319.</li> <li>Vivoni, E.R., Rango, A., Anderson, C.A., Pierini, N.A., Schreiner-McGraw, A., Saripalli, S., and Laliberte, A.S. 2014. <a href="http://www.esajournals.org/doi/abs/10.1890/ES14-00217.1">Ecohydrology with Unmanned Aerial Vehicles.</a> <em>Ecosphere</em>. 5(10): art130. <a href="http://dx.doi.org/10.1890/ES14-00217.1">http://dx.doi.org/10.1890/ES14-00217.1</a></li> </ol> <p> </p>
Chromophore-driven optical path reduction as an indirect inner filter effect correction strategy in fluorescence microplate assays - experimental data
<p>Experimental data for the paper entitled <em>Chromophore-driven optical path reduction as an indirect inner filter effect mitigation strategy in fluorescence microplate assays</em> (<a title="Persistent link using digital object identifier" href="https://doi.org/10.1016/j.saa.2025.127049" target="_blank" rel="noreferrer noopener"><span><span>https://doi.org/10.1016/j.saa.2025.127049</span></span></a>). </p> <p>An Excel file with multiple worksheets is provided for the following:</p> <p>1. Fluorescence data:</p> <p>The worksheets contain fluorescence values measured in tetraplicates using two microplate readers (Tecan Spark M10, Tecan, Austria and SpectraMax iD3, Molecular Devices, USA), with baseline values recorded in octuplicates. The results were averaged and baseline-corrected. Detailed notes on the titration experiments are included in the manuscript. Data include both IFE-uncorrected fluorescence and fluorescence corrected (fully or partially) by the addition of an absorbing chromophore.</p> <p>2. Absorbance data:</p> <p>All measured absorbance values obtained using the Tecan Spark M10 microplate reader with UV-Vis transparent microplates are included. The absorbance values at specific wavelengths suitable for the Lakowicz IFE correction method or for determining the concentration of the compound are given separately.</p> <p>3. Fluorescein spectra:</p> <p>UV-Vis and fluorescence excitation/emission spectra for highly dilute fluorescein concentrations where the inner filter effect (IFE) is negligible are reported. These measurements were performed to obtain “true” excitation and emission spectra without the influence of IFE quenching effects.</p> <p>4. ZINFE/NINFE IFE corrections:</p> <p>The dataset contains the results of ZINFE/NINFE IFE corrections (<a href="https://doi.org/10.1021/acs.analchem.2c01031">https://doi.org/10.1021/acs.analchem.2c01031</a>) applied to the fluorescence data and processed using the web service available at <a href="https://ninfe.science">https://ninfe.science</a>.</p> <p>The notation of the fluorophores and microplates is the same as in the manuscript. For reasons of visual clarity, the numerical titration indices are not in subscript.</p> <p> </p>
Data from: Canopy cover and soil moisture influence forest understory plant responses to experimental summer drought
<p>Extreme droughts are globally increasing in frequency and severity. Most research on drought in forests focuses on the response of trees, while less is known about the impacts of drought on forest understory species and how these effects are moderated by the local environment.</p> <p>We assessed the impacts of a 45-day experimental summer drought on the performance of six boreal forest understory plants, using a transplant experiment with rainout shelters replicated across 25 sites. We recorded growth, vitality and reproduction immediately, two months, and one year after the simulated drought, and examined how differences in ambient soil moisture and canopy cover among sites influenced the effects of drought on the performance of each species.</p> <p>Drought negatively affected the growth and/or vitality of all species, but the effects were stronger and more persistent in the bryophytes than in the vascular plants. The two species associated with older forests, the moss <em>Hylocomiastrum umbratum</em> and the orchid <em>Goodyera repens</em>, suffered larger effects than the more generalist species included in the experiment. The drought reduced reproductive output in the moss <em>Hylocomium splendens </em>in the next growing season, but increased reproduction in the graminoid <em>Luzula pilosa</em>. Higher ambient soil moisture reduced some negative effects of drought on vascular plants. Both denser canopy cover and higher soil moisture alleviated drought effects on bryophytes, likely through alleviating cellular damage.</p> <p>Our experiment shows that boreal understory species can be adversely affected by drought and that effects might be stronger for bryophytes and species associated with older forests. Our results indicate that the effects of drought can vary over small spatial scales and that forest landscapes can be actively managed to alleviate drought effects on boreal forest biodiversity. For example, by managing the tree canopy and protecting hydrological networks.</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.