Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
501
datasets available to search
ShareScore release 0.7.1
Dataset results
501 results for “Phylogenetic tree”
Figure 7. Amphibioplana onnisi. A, holotype RMNH.VER. 19956.a in Amphibioplanidae: a new branch and family on the phylogenetic tree of the triclad flatworms (Platyhelminthes: Tricladida), represented by a species from Sardinian caves with a remarkable lifestyle
Figure 7. Amphibioplana onnisi. A, holotype RMNH.VER. 19956.a, photomicrograph of a horizontal section of the head, with the brain (b) and the post-cephalic region, also showing the anterior intestinal branch (aib), left ovary (lo) with its tuba (tu) and the first tract of the left oviduct (lod), the most anterior vitellaria (vi) and testes (t); B, RMNH.VER. 19958.f, photomicrograph of a horizontal section of the post-pharyngeal region with the copulatory apparatus, showing the most caudal vitellaria (vi) and the two caudal gut trunks fusing to form a single branch (pib).
Figure 11. Amphibioplana onnisi. A, holotype RMNH.VER. 19956.a in Amphibioplanidae: a new branch and family on the phylogenetic tree of the triclad flatworms (Platyhelminthes: Tricladida), represented by a species from Sardinian caves with a remarkable lifestyle
Figure 11. Amphibioplana onnisi. A, holotype RMNH.VER. 19956.a, sagittal reconstruction of the copulatory apparatus; anterior to the right; B, CGAS Pla 22.3, sagittal reconstruction of the copulatory apparatus; anterior to the right.
FIGURE. Phylogenetic tree derived from Bayesian analysis, based on nrITS1-5.8S-ITS2 region data. Posterior probability (PP> 0.95) values from the Bayesian analysis are added at the nodes. The scale bar represents the number of nucleotide changes per site. (T) indicates the type specimen for this species. The new species are in bold. in Four new species of Entoloma (Entolomataceae, Agaricomycetes) subgenera Cyanula and Claudopus from Vietnam and their phylogenetic position
FIGURE. Phylogenetic tree derived from Bayesian analysis, based on nrITS1-5.8S-ITS2 region data. Posterior probability (PP> 0.95) values from the Bayesian analysis are added at the nodes. The scale bar represents the number of nucleotide changes per site. (T) indicates the type specimen for this species. The new species are in bold.
FIGURE 3. Nuclear and mitochondrial phylogenetic trees for Melanotaenia maccullochi s.l in Two new species of dwarf rainbowfishes (Atheriniformes: Melanotaeniidae) from northern Australia and southern New Guinea
FIGURE 3. Nuclear and mitochondrial phylogenetic trees for Melanotaenia maccullochi s.l.: (A) unrooted NJ tree based on pairwise Nei D's among all 13 sites analysed in the allozyme study, and (B) ML tree for 1141bp of cytochrome b. Population and taxon codes match Figure 1 and Table 1. NEQ = northeast Queensland, NT = Northern Territory. Another member of the 'maccullochi species group' occurring in near sympatry with M. maccullochi in the Fly River system, M. sexlineata, is included for reference.
Fig. 1 a Maximum likelihood phylogenetic tree inferred from the 550 in Tracking the diversity of the flatworm genus Imbira (Platyhelminthes) in the Atlantic Forest
Fig. 1 a Maximum likelihood phylogenetic tree inferred from the 550 bp of cytochrome c oxidase subunit I gene. b ABGD analysis and c GMYC analysis. Values indicate support for each node according to the bootstrap support values> 80 and maximum posterior probabilities> 0.95,
Fig. 2 in The phylogenetic system of primates-character evolution in the light of a consolidated tree
Fig. 2 Phylogenetic tree of the hominoid taxa considered in the present review. Numbers refer to sections in the main text that give general information on the respective taxa and evolutionary novelties in support of their monophyly. Note that all supra-specific taxa are crown groups
Fig. 5 A phylogenetic heatmap for the Metacarpals including our phylogenetic tree and a in Disentangling morphological variation in metapodials of giraffids: Modern and traditional approaches
Fig. 5 A phylogenetic heatmap for the Metacarpals including our phylogenetic tree and a large portion of the PCs
Fig. 1 Bayesian phylogenetic tree for Testudinoidean turtles and tortoises. The tree was constructed with 12 in Turtle and tortoise mitogenomes under contrasting positive selection pressure
Fig. 1 Bayesian phylogenetic tree for Testudinoidean turtles and tortoises. The tree was constructed with 12 PCGs' concatenated sequences (with Dermochelys coriacea as outgroup). Branch lengths
Fig. 2 in Non-ultrametric phylogenetic trees shed new light on Neanderthal introgression
Fig. 2 Novel non-ultrametric approach for detection of genetic flows timing. After the split (upper side of the square) at a given time in the past, two branches are generated: the branch of the Ancient Sample I (left side) and the branch of the Ancient Sample II (right side). When the Ancient Sample II's DNA is introgressed by the Ancient Sample I's DNA (or vice versa), the final result is a single modern population/ species containing percentages of both the genetic materials. To provide an example, the figure suggests that in the lower side of the square the 65% of the single modern population's DNA comes from the Ancient Sample II, while the remaining 35% from the Ancient Sample I. The arrow from the upper right vertex to the lower side of the square gives rise to the angle β. The two numbered yellow circles illustrate the two steps of the procedure described in the main text
FIGURE 1. The phylogenetic tree was constructed from18S in Tardigrades in the alpine region of Northeast China with an integrative description of Crenubiotus liangshuiensis sp. nov.
FIGURE 1. The phylogenetic tree was constructed from18S rRNA+28S rRNA+ITS-2+COI sequences. Numbers at nodes indicate Bayesian posterior probability, asterisks indicate maximum support (1.00), scale bar represents substitutions per position in the BI. The new species of the local samples are highlighted. Bars at the nodes indicate 0.95 highest probability density. The sequences of the related species were downloaded from GenBank (see supplementary material Table S2 for details).
FIGURE 3. Consensus tree with the C in The phylogenetic position of Chalcides ocellatus (Squamata: Scincidae) from Yemen and Somalia
FIGURE 3. Consensus tree with the C. ocellatus samples in this study as well as select samples from Kornilios et al. (2010). Posterior probabilities are listed before bootstrap numbers for select nodes. Sample numbers refer to those used by Kornilios et al. (2010).
Figure 24. Most parsimonious tree recovered from a in The skull of the Upper Cretaceous snake Dinilysia patagonica Smith-Woodward, 1901, and its phylogenetic position revisited
Figure 24. Most parsimonious tree recovered from a parsimony analysis of a data matrix containing 154 characters coded for 22 terminal taxa including the fossils Dinilysia patagonica, Eupodophis descouensi, Haasiophis terrasanctus, Najash rionegrina, Pachyrhachis problematicus, Sanajeh indicus, Wonambi naracoortensis, and Yurlunggur sp. Bremer support and bootstrap percentages are given at the nodes. Names have been added for nodes that represent broadly used clade names. Unambiguous synapomorphies for the labelled nodes are (see also Appendix 3): Node 1: 84 (1), 106 (1), 119 (1), 132 (1). Node 2: 10 (0), 34 (1), 63 (1), 76 (1), 99 (1), 144 (1), 148 (1), 149 (1), 154 (1). Node 3: 15 (2), 20 (1), 31 (1), 55 (1), 65 (1), 95 (1), 100 (1), 109 (1), 152 (1). Node 4: 23 (1). Node 5: 48 (2), 53 (1), 62 (1), 69 (1), 70 (1), 90 (1), 104 (1). Node 6: 83 (1), 85 (1), 98 (1), 99 (0), 125 (0), 126 (1), 128 (1), 132 (0). Node 7: 39 (1), 52 (1). Node 8: 43 (1), 56 (1), 68 (1), 79 (1), 102 (0). Node 9: 47 (1), 49 (1), 133 (1), 138 (0). Node 10: 72 (1), 125 (0). Node 11: 23 (1), 24 (1), 46 (1), 67 (1), 112 (1). Node 12: 10 (1), 41 (1), 51 (1), 78 (0), 91 (1). Node 13: 29 (1), 38 (1), 47 (1), 60 (1), 64 (2), 77 (0), 80 (2), 108 (1), 125 (0), 126 (1). Node 14: 17(1), 21 (1), 27 (2), 50 (0), 61 (1). Node 15: 99 (0). Node 16: 52 (1), 81 (1). Node 17: 13 (1), 65 (0), 122 (1), 143 (1). Node 18: 8 (1), 30 (1), 56 (0), 86 (1), 87 (1), 113 (2), 117 (1), 151 (1). Node 19: 15(1), 19(1), 20 (2), 21 (1), 22 (1), 26 (2), 71 (1), 73 (2), 111 (1).
Figure 3. Phylogenetic tree estimated using BEAST from dataset 1 in Phylogeography and evolutionary lineage diversity in the small-eared greater galago, Otolemur garnettii (Primates: Galagidae)
Figure 3. Phylogenetic tree estimated using BEAST from dataset 1 (cytochrome b) and node-calibrated using the fossil record.
RNA-Seq Based Reconstruction of the Phylogenetic Tree of the Genus Flaveria (Asteraceae)
GEO Series GSE54339. Flaveria cronquistii; Helenium autumnale; Flaveria kochiana; Flaveria sonorensis; Flaveria bidentis; Flaveria pubescens; Tragopogon dubius; Tanacetum parthenium; Flaveria angustifolia; Flaveria pringlei; Flaveria trinervia; Flaveria brownii; Flaveria palmeri; Flaveria vaginata. 21 samples. Type: Expression profiling by high throughput sequencing.
Supplementary phylogenetic trees of Babesia bigemina based on partial sequences of both genes Rap-1a and gp45, with SH-aLRT support values (%), aBayes support, and ultrafast bootstrap support (%).
Open the record for dataset details and reuse information.
Phylogenetic trees of genus Oncidium Sw. based on analysis of DNA sequences
<p>Genus <em>Oncidium Sw</em>. is widely regarded as a polyphiletic, and the taxonomic boundaries between him and such genera as <em>Odontoglossum</em> Kunth. or <em>Miltonia</em> Lindley remain blurred. The aim of the study was to determine the phylogenetic relationships within the genus <em>Oncidium</em> <em>s.lato</em> based on the DNA sequences analysis. The correlation between molecular data and geographical distribution of the studied species was also examined. Two markers were used for the analysis: the ITS sequence derived from the nuclear genome and the matK gene that is part of mitochondrial DNA. Sequences were obtained by DNA isolation from frozen leaves, polymerase chain reaction (PCR) and sequencing. For their analysis in the PAUP* program, a feature-based parsimony (MP) method was used, and for assessing the reliability of the resulting trees, the non-parametric bootstrap method. The ITS MP search resulted in 10 000 trees (CI=0.49; RI=0.631). The aligned matrix resulted in 814 characters of which 433 were parsimony informative. The matK MP search resulted in 10 000 trees (CI=0.505; RI=0.714). The aligned matrix resulted in 1359 characters of which 358 were parsimony informative. </p> <p>This dataset contains two image files with phylogenetic trees - the first one based on ITS analysis of 190 species and the second one based on the matK analysis of 154 species. The upper numbers above branches are the Fitch values and lower numbers are the bootstrap values. The information about geographical distribution is added. The dataset includes also two NEXUS files (for ITS and for matK) with DNA sequences. </p>
Supplementary phylogenetic trees of Babesia bigemina based on partial sequences of both genes Rap-1a and gp45, with SH-aLRT support values (%), aBayes support, and ultrafast bootstrap support (%).
Open the record for dataset details and reuse information.
Supplementary phylogenetic trees of Babesia bigemina based on partial sequences of both genes Rap-1a and gp45, with SH-aLRT support values (%), aBayes support, and ultrafast bootstrap support (%).
Open the record for dataset details and reuse information.
Major_research_salmonella_typhimurium\Data\Phylogenetic_tree_data
Open the record for dataset details and reuse information.
Phylogenetic Species Trees used in QfO benchmarking
<p>Phylogenetic Trees used in all Species Tree Discordance Challenges of Quest for Orthologs Benchmarking workflow 2018 (https://github.com/qfo/benchmark-webservice/tree/elixir).</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.