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13,618 results for “biology”
Beyond the various contrivances by which orchids are pollinated: global patterns in orchid pollination biology
<p>Global database of Orchidaceae to explore the frequency of different breeding systems, means of pollinator attraction, and pollinator diversity, and how these features vary geographically and by growth habit.</p> <p>Two files: </p> <p>Pollination List Literature Cited thru 2024 (word file)</p> <p>Pollination List thru 2024 (excel file)</p>
The Invasion Biology Ontology (INBIO)
<p>The Invasion Biology Ontology (INBIO) contains terms and concepts relevant in the field of invasion biology, which is a research area dealing with the translocation, establishment, spread, impact and management of species outside of their native ranges, where they are called non-native or alien species. This first version of the ontology covers terms and concepts needed to describe twelve major invasion hypotheses building the <a href="https://hi-knowledge.org/invasion-biology/">hierarchical hypothesis network</a> (see also Jeschke JM, Heger T (Eds) (2018) Invasion Biology: Hypotheses and Evidence. CABI, Wallingford, UK).</p>
BOCK: Biological networks and Oligogenic Combinations as a Knowledge graph
<p>BOCK is a knowledge graph integrating oligogenic disease information (originally from the Oligogenic Disease Database (Natchtegael et al. 2022)) together with multiple biological networks and ontologies.</p> <p>Compared to more generic knowledge graphs, we selected specifically networks relevant to understand the molecular mechanisms of epistasis, placing genes as the central entities, and focused on trusted resources describing a large set of human genes and their interactions.</p> <p>All entities in the KG are linked to their source database entry via an URI (Uniform Resource Identifier) to facilitate integrations within larger bioinformatics linked data repositories.</p> <p>BOCK 2.0 integrates recent versions of the used ontologies and databases, as well as additional pathway-specific (The Reactome Pathway Knowledgebase 2024, Milacic et al.) and tissue-specific information (COXPRESdb v8, Obayashi et al.). Additionally the database used for the coexpression relation between genes, has been replaced by COXPRESdb v8.</p> <p>We provide BOCK 2.0 in three formats:</p> <ol> <li><strong>GraphML (Graph Markup Language)</strong>: a network format enabling the fast import of the KG by multiple libraries (e.g networkx) and tools (e.g Cytoscape).</li> <li><strong>XML (Extensible Markup Language)</strong>: a text-encoding system that is human-readable and compatible with many systems.</li> <li><strong>Neo4J import files</strong>: tab-separated files that can be easily imported into Neo4J using the neo4j-admin utils.</li> </ol> <p> </p>
Dataset to: Terrestrial runoff is an important source of biological ice-nucleating particles in Arctic marine systems
<p>The dataset contains supplementary information to the manuscript "Terrestrial runoff is an important source of biological ice-nucleating particles in Arctic marine systems"</p> <p>The file <a href="https://zenodo.org/api/records/14988900/draft/files/INP_data_all_samples.csv/content" target="_blank" rel="noopener noreferrer">INP_data_all_samples.csv</a> contains information on the ice nucleation measurements for all samples presented.</p> <p>The file "<a href="https://zenodo.org/api/records/14044414/draft/files/Significant_taxa_list_16S.xlsx/content" target="_blank" rel="noopener noreferrer">Significant_taxa_list_16S.xlsx</a>" contains a list of the bacterial taxa that significantly correlated with the concentration of INPs observed in the samples, while the file <a href="https://zenodo.org/api/records/14044414/draft/files/Significant_taxa_list_18S.xlsx/content" target="_blank" rel="noopener noreferrer">Significant_taxa_list_18S.xlsx</a> contains the same information for the microalgae. </p> <p>The relative abundance of the taxa in each sample is indicated in the columns "F" to "T". </p>
Fig. 33 in Nesting Biologies and Immature Stages of the Tapinotaspidine Bee Genera Monoeca and Lanthanomelissa and of Their Osirine Cleptoparasites Protosiris and Parepeolus (Hymenoptera: Apidae: Apinae)
Fig. 33. Cocoon of Lanthanomelissa betinae from which larva had been removed, lateral view. Fig. 34. Cocoon of Parepeolus minutus from which larva had bee removed, lateral view. Fig. 35. Inner surface of front end of cocoon of Lanthanomelissa betinae showing complete covering by pale feces. Fig. 36. Inner surface of front end of cocoon of Parepeolus minutus showing central area that is not coated by feces.
Fig. 1 in Nesting Biologies and Immature Stages of the Tapinotaspidine Bee Genera Monoeca and Lanthanomelissa and of Their Osirine Cleptoparasites Protosiris and Parepeolus (Hymenoptera: Apidae: Apinae)
Fig. 1. Nesting site of Monoeca haemorrhoidalis, showing dense ground cover in foreground. Fig. 2. Closeup of two nest entrances of same. Fig. 3. Main burrow of Monoeca haemorrhoidalis showing repetitive tamping impressions on shiny burrow wall. Fig. 4. Monoeca haemorrhoidalis, spiral inner surface of cell closure. Figs. 5, 6. Closure ends of cells of Monoeca haemorrhoidalis, showing plugged entrance holes made by females of Protosiris gigas; holes are filled by them as they depart.
Global Biotic Interactions: Elton Dataset Cache Museum of Southwestern Biology and dependencies
<p>Global Biotic Interactions: Elton Dataset Cache Museum for Southwestern Biology and dependencies</p> <p>The intended use of this archive/cache is to allow for offline-enabled access versions of existing species interaction datasets. The program "Elton" (https://doi.org/10.5281/zenodo.998263) was used to populate the content of elton-datasets.tar.gz . The same program can be used to extract information from the cache archive also. Global Biotic Interactions (https://globalbioticinteractions.org, https://doi.org/10.1016/j.ecoinf.2014.08.005) also uses these archives to create derived species interaction data archives, search indexes and APIs.</p> <p>Please note that due to size considerations, offline-enabled access to an elton dataset cache of iNaturalist interaction data has been excluded from this publications and moved into a separate Zenodo publication at https://doi.org/10.5281/zenodo.3950546 .</p> <p>Contents<br> --------</p> <p>README:<br> this file</p> <p>elton-datasets.tar.gz:<br> versioned archive with species interaction datasets</p> <p>elton-datasets.tar.sha256:<br> content signature of elton-datasets.tar</p> <p>elton-datasets.tsv:<br> list of included datasets</p> <p>elton.jar:<br> commandline program to help access the species interaction datasets</p> <p>Usage<br> -----</p> <p>To install, extract elton-datasets.tar.gz into a directory of choice using:</p> <p>tar xfz elton-dataset.tar.gz</p> <p>To use, download elton.jar included this publication and execute the following to get a list of available datasets:</p> <p>java -Xmx4G -jar elton.jar datasets</p> <p>on a system that has java v8+ installed.</p> <p>If all goes well, you should be able to regenerate the included file elton-dataset.tsv .</p> <p>For more information on how to use elton.jar, execute:</p> <p>java -jar elton.jar usage</p> <p>or visit https://github.com/globalbioticinteractions/elton for more available commands.</p> <p>Alternatively, without using Elton, you can access the data by inspecting the access.tsv files in the various directories of the datasets directory.</p> <p>When using these datasets in a publication or product, please cite the *original* data providers and publications. You can find the citations in the data.</p> <p>Included datasets:</p> <p>globalbioticinteractions/msb-para Museum for Southern Biology (MSB) Parasite Collection https://github.com/globalbioticinteractions/msb-para/archive/54643c878313d7ccbf30325c713925d6c937fc9c.zip 2021-11-13T01:22:28.662Z 43a7e837b6e27532cc90eb50995fb4db169d0c8109aa27742cfabdedb3d390dc 0.12.2</p> <p>Associated content ids:</p> <p>hash://sha256/567720ed6bc8ed0e73020eb1cefb601ce274715926f42ad3b22197e26f07dbd6<br> hash://sha256/3e401123bcfe9d67ffa149b3a5208c4d91e3291c56a089796287ab9f90a3aed9<br> hash://sha256/8b0e05281afa51031f25fdd9238a9a8df2beba81dbb71aee8f05fd1265e8216a<br> hash://sha256/072be68d48c9e841458a1f60da6e66173406a97af569a04953e8a06272c3f3f4<br> hash://sha256/69493156747f43e6dedd09bdfca0ae89a8e0c97183ce71f7c8a51965361d8529<br> hash://sha256/5dbc9eb2b059a72e13c9726ffb4b6af203361254d85cfa4b4ab59cfdb7bf8395<br> hash://sha256/3af388dbae61d93e6a4509b50c141ee8705f65f4fe4e05c37b30ce7f3f7fb4f4<br> hash://sha256/d0143cd7ad5cdb0f95215abf191a715533b6d275cdda9e0a43aeef4a02d9b8e2<br> hash://sha256/04ac42484f839523527ca89f789ea9a245eda78ee24e3b6b347ee65fd206c2c7<br> hash://sha256/744e69970ce7abcd36f5dd02acd61a44e37d58e8f7d33397ec9e9904eeea3d2c<br> hash://sha256/86810de51437c4ddfc8dc41f5596466cf5641c42f9c83e4f2bb237db61859458<br> hash://sha256/c663f9961506e3a28a7a3c50f35ef7a513bf0228fb1c78f89cb7b211b8ae68eb<br> hash://sha256/6d6d59bee1facb8b7b2d6240e508c93646ff2aba17b7a00f3a476019fe1a8d2f<br> hash://sha256/58f9279d56e59dd294abff0b56900900a1bc1e0a1bc5119a05262f89075ff9d0<br> hash://sha256/153bc89714d252f651a51dad1fd9fd10fdde9d011295f77a90d8b55bc4f41760<br> hash://sha256/23f1c12611580255165f8db31d1dc2603c1dec3f4785ea3133ec11148d3cea1c<br> hash://sha256/839a5b7c265ea594e4a5c60ffd4239f1340975b8f6869c0668887615aa263a51<br> hash://sha256/5911ce5014722d467b36390b382e0fadadbc4c08cbd9b7a83a0f1dba3cc4c179<br> hash://sha256/09d16992192bdfdb231d1fde9617324fc430ebfcba217a14cc79bd8d1d265323<br> hash://sha256/efdb2d5f7193aa602c01364f204672bb5ab79f9f10c24a7f3aa9b61c6d1ccc19<br> hash://sha256/696f9b2aba8218dd9163f3d3c3801c14f4393665538571a7e32681d942019425<br> hash://sha256/ae87389f2e17ce8ff0498c3560936fc3fd58529e2ea7aad6bcc475d871c407ad<br> hash://sha256/ea6dae042759a79708898316dedbd09ea64047e8f3ea0615b224e7fb488a778e<br> hash://sha256/e66b6bf4c14ab2899b57d05f5df3b3cbfe4fab4398a57201fb079ae728ad939a<br> hash://sha256/48c68b584b7da5276e3e768bf544db23870fc151c5886d60a8343f312b74ff59<br> hash://sha256/699058a028a4512f384ed12905540b6da152c801eb933dfb8bb7327cbf320028<br> hash://sha256/063a01cd7142498db39254d64491a64aad9763063c145a6255758ec855317ab5<br> hash://sha256/d54d6ebf28db71aac9ecb478a853814aea88b2d444a28c8f41d483bdfa658ddb<br> hash://sha256/2dd6224800ba4213e25f8dbcaad4415f8a79e64ea58837933765e07cb76b440b<br> hash://sha256/9c6c4c4e65211805d5313fca8db474c259bb7f78ae8c913c22f363894093ea97<br> hash://sha256/ccf0ba861d0baf4b07ec98d8d316e20907701640207a30c8e028d453bff8315a<br> hash://sha256/f84efb0fa65e992000ed88286a46b5002be5b86746e55193a443f0207fc03e19<br> hash://sha256/7f3a60aa646cfff30f9f7b3d7f6bc245ffd8d0adf9756b23912055beb9ef55fe<br> hash://sha256/4630f1b8f75ed2b72eb207eee0a5e162b69827a78d4863feacb4251a8971acc5<br> hash://sha256/33cfafb530c1bf922233cb2bbab8fae6432d933f49b664e427d26fa83d2f1512<br> hash://sha256/58f78efc777c0c98da94f08ae6a7b4086ce443da38c48484a797f7fa48f2d33e<br> hash://sha256/9e679f22382daf80f43bb40730da24c063bc93648ca690f670aa7759e0738815<br> hash://sha256/9bdd72c9c1c46658cbbff27e72d11aac337d0df7c6bed27ad2bbe9eb3674716f<br> hash://sha256/73876364b30e626104b38ce78b7300e3aef0034c93b9a8617553cc3096ec634a<br> hash://sha256/54724f55de92e8c0972857c9a8c9025aa6732c95bc2b82bf7059a2b94e2dbb97<br> hash://sha256/25e60c85d5a3d0dc99e75c0bc914871fb887b93d2face8a13b268fed40701ae2<br> hash://sha256/3cf9036536595ad0f610eebdbb0e71cdcd5e592ef8fe92a292c3432d8003c91d<br> hash://sha256/f14f46b619a5a4bc3c54817686dee2616e04b4d28f6a1bcb8ce42f92a23763d1<br> hash://sha256/c5685f62023f0c7598f4c0df0c1c6abd88cd69099c1a2270e2326c92414ae8d5<br> hash://sha256/192833e421861ea60be772d27e6ae4d77894e15bdd7bec9d82334131d2fa340b<br> hash://sha256/123c530d39a6208ceb98aac89ad454d274fb87f4df3ffafb3cfd1cc4131671e3<br> hash://sha256/e6834acbab2fc2e8226ea13a50193f3298bc56cdcc5b795bf9a327cf1128e68e<br> hash://sha256/75f0fab12bf9692f0088f1ac8877708d0f1f6c52acc688c62462d12f9a3127b2<br> hash://sha256/f361208cdd53f4535908c6d575cac1bf677920fd52ad499ac46b5bcc0dbf60e7<br> hash://sha256/8ba38f7587a85f3bfb0a07d82ccc6cff69bc586dabd3c93139c3e9e5752aa1d9<br> hash://sha256/29840fa2e69b15b9913af921f2a738602f51a457d4cd92a8dee79562a4875d94<br> hash://sha256/2b5cb320b5ee4d345bf3b9fdf3648954b4cbce3b2f822d488a7bb92ab52ef171<br> hash://sha256/d80303453592038c485247966d611c13ca6304f03d44f0bc9756097a275fbc13<br> hash://sha256/0e7f50547be1add0b78c29f36a66e471ee04909a4775b31e0868d320a7877e15<br> hash://sha256/128453c25acb3b1ed0112df1a119e67f5098ab8f0b038412733b34a9deeec1bb<br> 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hash://sha256/94b4bb1651e9816c9137c143c05523d8c452a04ae2a39a3085a8e8463cfeb2cb<br> hash://sha256/123b670ed12662dcc150fa4a1d391d5d81d5d57ed2101b0ded844dd42269fb9e<br> hash://sha256/c7dea0890e8c778c6c79119c599ef606543a612e5d9a9b35b1bc08720a7c37d1<br> hash://sha256/aff80b8f578430099dd9a8489d68195f6ec058167ff43b59a20b273c07dc69f4<br> hash://sha256/d63841cd03e9bd1edd28d4e89d3f412d5b9117cd2b80350ce38a03e12cd15066<br> hash://sha256/6b1b6f3c4cd166d5d1f087ccde996a948af776ddae8c6c9a4ecaa9028b244e60<br> hash://sha256/fa73a979f6d3ec020459b03298e42fef1d0be399466867e2258c94da1d7613e3<br> hash://sha256/6146fc9c3c0a9f766d41ee08f699eaa6f0e3f171f72feb2d40e8a1edf61ab84d<br> hash://sha256/fe72c48d094f0273bd6580a956f2d60ef2802e298c888239e5df2b889c146e30<br> hash://sha256/31e61eb8035b01508dd70200426bc5154af7ac07451dc839dcc2207654ba68de<br> hash://sha256/4b9c2d0063393cca67d88f218a44f049bb42f8e86e15b4c16f8dd14b4992e8f4<br> hash://sha256/ae937100bd982bf7a819697e69070b5a7bb1644b39740688f05c220f70c74b43<br> 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Fig. 6 in Structural biology and evolution in the monotypic Amazonian palm Wendlandiella (Arecoideae: Chamaedoreeae)
Fig. 6. – Pistillate flower of Wendlandiella gracilis. A. Pistillate flower at anthesis (var. gracilis); B. Upper view of pistillate flower (var. polyclada); C. Gynoecium (var. polyclada); D. Corolla and gynoecium (var. polyclada); E. Flower bud, LS (var. polyclada); F. Flower bud, TS (var. polyclada).
Fig. 7 in Structural biology and evolution in the monotypic Amazonian palm Wendlandiella (Arecoideae: Chamaedoreeae)
Fig. 7. – Fruits and seeds of Wendlandiella gracilis. A. Ripe fruit (var. gracilis); B. Ripe fruit (var. simplicifrons); C. Seed (var. gracilis). [Plant cultivated by H. Lorenzi in the Instituto Plantarum Botanical Garden, Campinas, Brazil] [Photos: A–B: H. Lorenzi; C: M. Caixeta]
Fig. 5 in Structural biology and evolution in the monotypic Amazonian palm Wendlandiella (Arecoideae: Chamaedoreeae)
Fig. 5. – Staminate flower in Wendlandiella gracilis. A. Anthesis (var. polyclada); B. Androecium displaying filaments and anthers (var. gracilis); C. Pistillode (var. gracilis); D. Calyx (var. gracilis); E. TS at basal level (var. polyclada); F. Pollen intermixed with raphide idioblasts (var. gracilis).
Fig. 2 in Structural biology and evolution in the monotypic Amazonian palm Wendlandiella (Arecoideae: Chamaedoreeae)
Fig. 2. – Root anatomy in Wendlandiella gracilis var. polyclada. A. Apex of the root, LS; B. Elongation area of root tip, CS; C. First order root, detail of raphide idioblasts, CS; D. First order root, detail of inner cortex starch containing cells, LS-CS.; E. Rhizodermis and exodermis, CS; F. Vascular cylinder and endodermis layer, CS. [Abbreviations: en, endodermis; ex, exodermis; fi, fiber; ic, inner cortex; me, meristematic zone; oc, outer cortex; pc, pith vascular cylinder; pe, pericycle; ph, phloem; rc, root cap; rh, rhizoderm; ri, raphide idioblast; vc, vascular cylinder; xy, xylem]
Fig. 3 in Structural biology and evolution in the monotypic Amazonian palm Wendlandiella (Arecoideae: Chamaedoreeae)
Fig. 3. – Leaf morphology and anatomy in Wendlandiella gracilis. A. Leaf morpho-types: var. gracilis: 1. adaxial side, 2. abaxial side; var. polyclada: 3. adaxial side, 4. abaxial side; var. simplicifrons: 5. adaxial side, small-leaved morpho-type, 6. adaxial side, large-leaved morpho-type; B. Leaf blade stomata, abaxial side; C. Leaf blade surface, abaxial side; D. Lamina anatomy (var. polyclada), CS. [Abbreviations: ep, epidermis; fi, fiber bundles in contact with epidermal layer; mc, mesophyll cells with chloroplasts; mr, midrib; ri, raphide idioblast; vs, vascular bundles free of surface layers]
Fig. 4 in Structural biology and evolution in the monotypic Amazonian palm Wendlandiella (Arecoideae: Chamaedoreeae)
Fig. 4. – Inflorescence structure and flower arrangements in Wendlandiella gracilis. A. 1-order ramification; B. Proximal ramification in basal rachillae; C. 2-branched order ramification in basal rachillae; D. Solitary female flowers (var. polyclada); E. Male flowers in an acervulus of two alternating rows (var. gracilis); F. Male flowers in an unordered acervulate complex (var. gracilis).
Fig. 1 in Structural biology and evolution in the monotypic Amazonian palm Wendlandiella (Arecoideae: Chamaedoreeae)
Fig. 1. – Growth habit diversity in Wendlandiella gracilis. A. Schematic representation of the development of stems and major types of growth habit; B. Solitary growth habit (var. simplicifrons); C. Clustered growth habits (var. gracilis); D. Production of new plantlets from aerial stems (var. simplicifrons). [B: Balslev et al., 7677, AAU; C: Balslev et al., 7865, AAU] [Photos: B, C: H. Balslev; D: S. Zona, taken in Nongnooch Tropical Garden, Pattaya, Thailand]
Fig. 1 in Five Trophically-transmitted Parasites from Adult Arctic Lampreys Lethenteron camtschaticum (Petromyzontiformes: Petromyzontidae): Biological Indicators of the Host's Marine Life as a Predator
Fig. 1. Endoparasites from adult Arctic lampreys Lethenteron camtschaticum (Tilesius, 1811) from the Ishikari River, Hokkaido. A, Brachyphallus crenatus (Rudolphi, 1802); B, Lecithaster gibbosus (Rudolphi, 1802); C, Nybelinia surmenicola (Okada in Dollfus, 1929); D, metabasal armature of a tentacle of N. surmenicola; E, tetraphyllidean plerocercoid; F, male specimen of Bolbosoma sp.; G, female specimen of Bolbosoma sp. Scale bars: A–B, 500 µm; C, E–G, 2 mm; D, 50 µm.
Figs 6–13 in Taxonomic Review Of Euphydryas Maturna (Linnaeus, 1758) (Lepidoptera, Nymphalidae) With Description Of A New Subspecies From Dobrogea (Romania) And Notes On Conservation Biology
Figs 6–13. Genital slide of Euphydryas maturna and E. cynthia spp.: 6–7 = E. m. opulenta RÁKOSY et VARGA, ssp. n. (male, paratypes), 8–9 = E. m. partiensis VARGA et SÁNTHA, 1973 (male, paratypes), 10 = E. m. idunides (FRUHSTORFER, 1917) (male), 11 = E. m. maturna (LINNAEUS, 1758) (male), 12 = E. cynthia leonhardi (FRUHSTORFER, 1917), Rila Mts (male), 13 = E. cynthia drenovskyi (RÖBER,
Fig. 15 in Taxonomic Review Of Euphydryas Maturna (Linnaeus, 1758) (Lepidoptera, Nymphalidae) With Description Of A New Subspecies From Dobrogea (Romania) And Notes On Conservation Biology
Fig. 15. Variability in shape of processus posterior of Euphydryas maturna spp.: A–C = E. m. opulenta ssp. n. (Dobrogea); D–H = E. m. partiensis (E Hungary, Guthi forest); I–L = E. m. idunides
Fig. 18 in Taxonomic Review Of Euphydryas Maturna (Linnaeus, 1758) (Lepidoptera, Nymphalidae) With Description Of A New Subspecies From Dobrogea (Romania) And Notes On Conservation Biology
Fig. 18. The results of PCA. The points represent the samples; polygons indicate those samples that originate from the same population. The first two axes explained 43.2% of the total genetic variation
Fig. 5 in Hoverflies (Diptera: Syrphidae) of El Ventorrillo Biological Station, Madrid province, Spain: a perspective from a late twentieth century inventory
Fig. 5. Hoverfly diversity of Sierra de Guadarrama (species richness). All localities with hoverfly records in the literature are included. The category 'undefined' refers to unspecified localities within Sierra de Guadarrama. M, Madrid province; SG, Segovia province.
Fig. 4 in Hoverflies (Diptera: Syrphidae) of El Ventorrillo Biological Station, Madrid province, Spain: a perspective from a late twentieth century inventory
Fig. 4. Biogeographic diversity of El Ventorrillo hoverflies. Species known to be present in each biogegraphic zone of Europe, expressed both in species richness (within grey bar) and percentage (above bar) calculated from the total number of species found at El Ventorrillo. Notice that a species can be present in more than one biogeographic zone.
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Annotated Behaviour and Observability Dataset (ABODe)
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