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3,947 results for “Requirements”
Downloaded datasets required to run code repository
<p>Downloaded datasets required to run code repository</p>
Material Suplementar - Identifying Requirements for a Multimodal User Experience Evaluation Framework for Interactive Web Systems
<p>Esta planilha contém o detalhamento do processo de codificação realizado para a identificação dos requisitos apresentado no artigo "<em>Identifying Requirements for a Multimodal User Experience Evaluation Framework for Interactive Web Systems</em>". Este artigo está submetido no XXIX Simpósio Brasileiro de Sistemas Multimídia e Web (WebMedia).</p> <p>A primeira aba da planilha contém os trechos dos artigos que geraram os códigos e os respectivos requisitos. A segunda aba mostra o agrupamento dos códigos similares para definir o conjunto de requisitos.</p>
Data required for "Quantifying timber illegality risk in the Brazilian forest frontier"
<p>This repository contains data required to reproduce the figures and statistics of the study: "Quantifying timber illegality risk in the Brazilian forest frontier". Code and instructions for reproduction of the study can be found at https://github.com/carolsrto/illegality-risk-ns</p>
Supplementary material for: Inconsistency Detection in Natural Language Requirements using ChatGPT: a Preliminary Evaluation
<p>Supplementary material including both data and annotations. For each document we present:</p> <ol> <li>annotated results of the chatGPT answers;</li> <li>annotated results of the manual analysis</li> <li>The requirements and the grund truth pairs. Originals requirements are marked with "1" in the third column, mutants are marked with "0". </li> </ol>
A Data-Driven Approach for Finding Requirements Relevant Feedback from TikTok and YouTube
<p>This dataset includes the list of videos from TikTok and YouTube, regarding 20 different products, used in our study on utilizing videos to identify requirements relevant user feedback. We also provide the content and labeling for each video. In addition, we provide the search terms for each of the products that helped us find the videos. </p>
Supplementary material for the study titled "Investigating ChatGPT's Potential in the Requirements Elicitation Process"
<p>This supplementary material folder consists of ChatGPT-generated responses to 6 questions asked to elicit requirements for the development of Trustworthy AI. This also has a glossary of Trustworthy AI qualities and requirement quality attributes used to evaluate the responses consisting of Trustworthy AI requirements mentioned above. </p>
Data required to make figures showing asymmetric seafloor depth across the Juan de Fuca plate and its cause.
<p>Scripts for making figure can be found here: 10.5281/zenodo.7806913</p>
SIRT2 is required for NaBT-induced CRC cell differentiation
<p>Activation of the Wnt/β-catenin pathway is one of the hallmarks of colorectal cancer (CRC). Sirtuin 2 (SIRT2) protein has been shown to inhibit CRC proliferation. Previously, we reported that SIRT2 plays an important role in the maintenance of normal intestinal cell homeostasis. Here, we show that SIRT2 is a direct target gene of Wnt/β-catenin signaling in CRC cells. Inhibition or knockdown of Wnt/β-catenin increased SIRT2 promoter activity and mRNA and protein expression, whereas activation of Wnt/β-catenin decreased SIRT2 promoter activity and expression. β-catenin was recruited to the promoter of SIRT2 and transcriptionally regulated SIRT2 expression. Wnt/β-catenin inhibition increased mitochondrial oxidative phosphorylation (OXPHOS) and CRC cell differentiation. Moreover, inhibition of OXPHOS attenuated the differentiation of CRC cells induced by Wnt/β-catenin inhibition. In contrast, inhibition or knockdown of SIRT2 decreased, while overexpression of SIRT2 increased, OXPHOS activity and differentiation in CRC cells. Consistently, inhibition or knockdown or SIRT2 attenuated the differentiation induced by Wnt/β-catenin inhibition. These results demonstrate that SIRT2 is a novel target gene of the Wnt/β-catenin signaling and contributes to the differentiation of CRC cells.</p>
Fig. 2 in Zinc uptake and HMA4 activity are required for micro- and macroelement balance in tobacco (Nicotiana tabacum)
Fig. 2. Classification of gene expression changes observed in both the HMA4 double-knockout mutants (cv. #3) and HMA4 RNAi plants (cv.#1) relative to their respective controls. The genes were classified manually according to the putative function of the closest Arabidopsis Blast hit (see Supplementary Table S2).
Fig. 1 in Zinc uptake and HMA4 activity are required for micro- and macroelement balance in tobacco (Nicotiana tabacum)
Fig. 1. (a) Relative element contents of HMA4-impaired plants compared with their controls. HMA4 RNAi plants in cv.#1 background were compared with their WT controls (n = 3 replicates each), and HMA4 double-mutant plants in cv. #3 background were compared with their null-segregant controls (n = 4). The elements were measured in dry weight of lower leaves of plants grown under greenhouse conditions. The error bars depict the 0.95 confidence interval (CI) corrected according to Satterthwaite approximation. (b) Pictures of representative plants of each group (sticker size = 11.9 cm).
Fig. 6 in Zinc uptake and HMA4 activity are required for micro- and macroelement balance in tobacco (Nicotiana tabacum)
Fig. 6. Relative element contents of different HMA4-double mutants versus the null-segregant WT controls in field experiments. The data were consolidated over 4 years of field experiments in Switzerland and 3 years of field experiments in Poland, as described in the Experimental section. The elements were measured in dry weight of leaves (mid-lower leaf position). Bars indicate estimates and confidence intervals (α = 0.1).
Fig. 4 in Zinc uptake and HMA4 activity are required for micro- and macroelement balance in tobacco (Nicotiana tabacum)
Fig. 4. Relative elemental content of N. tabacum cv. #1 and cv. #2 HMA4 RNAi plants compared with their WT and of HMA4 double-knockout mutants compared with their null-segregants, for four different fertilization conditions: (a) normal fertilization, (b) fertilization containing lower concentrations of phosphate, (c) fertilization containing higher concentrations of Zn, and (d) fertilization with low concentrations of phosphate and high concentrations of Zn. The high Zn condition was achieved by addition of 0.1 g additional Zn per plant. The elements were measured in dry weight of leaves (mid-lower leaf position). Absolute data are listed in Supplementary Table S3. Data represent mean (0.95 CI) of n = 5 replicate plants, corrected according to Satterthwaite approximation. (Three outliers were removed for condition (d): Al and Cu for cv.#2; Ti for cv.#3.).
Fig. 3 in Zinc uptake and HMA4 activity are required for micro- and macroelement balance in tobacco (Nicotiana tabacum)
Fig. 3. Working model of metabolic changes in HMA4-impaired plants based on the gene expression changes observed in the roots and leaves of HMA4 RNAi and HMA4-mutant N. tabacum plants relative to their controls. The lack of HMA4 function causes Zn deficiency in leaves, leading to a local Zn-deficiency response. In roots, a Fe-deficiency response is observed, caused either by a high Zn:Fe ratio in the roots or by a systemic Zn-deficiency signal. The Fe-deficiency signal leads—via the transcription factor FIT1—to upregulation of the Fe- and Mn- transporter genes IRT1 and NRAMP1 and also induces the synthesis and export of iron-binding compounds (IBC), thus additionally assisting Fe uptake. At the same time, a P-deficiency signal involving the transcription factor HHO2 is generated in the leaves. In roots, the P-deficiency signal leads to increased expression of genes encoding acid phosphatases, enabling increased phosphate uptake from the rhizosphere. Consequently, Fe, Mn, Cu, and P accumulate in the leaves. P is stored in vacuoles (via PHT5; 1, PHT5; 3) and also exported to mitochondria and chloroplasts. Cu is detoxified by transport to the chloroplasts, which are a major site of Cu use because of Cu-containing plastocyanin production. However, high levels of Cu are toxic for the photosynthetic electron transport system, especially for photosystem II, which is reflected in the upregulation of PII light harvesting complex genes (LHCB). At the same time, Cu uptake to the cells is limited by downregulation of COPT1. Ion uptake might cause a lower osmotic potential, leading to water influx via various aquaporin genes. High turgor pressure or Fe excess ultimately affects the cell wall, as observed by the increased expression of genes involved in cell wall biosynthesis, expansion, and crosslinking. bHLH115: basic helix-loop-helix transcription factor; CA: carbonic anhydrase; CESA: cellulose synthase; COPT: copper transporter; DMRL: dimethyl-8-ribityllumazine synthase; EXPA: expansin; FIT: FER-like regulator of iron uptake (transcription factor); HHO2: hypersensitivity to low phosphate-elicited primary root shortening 1 homolog 2 (myb-like transcription factor); HMA: heavy metal ATPase; IBC: iron binding compound; IRT: iron-regulated transporter; LAC: laccase; LHCB: photosystem II light harvesting complex; NA: nicotianamine; NAS: nicotianamine synthase; NRAMP: natural resistance-associated macrophage protein (metal ion transporter); PDR: pleiotropic drug resistance (ATP-binding cassette transporter); PHT: phosphate transporter; PIP: plasma membrane intrinsic protein; PME: pectin methyl esterase; PMEI: pectin methyl esterase inhibitor; PRX: peroxidase; RBCS: ribulose bisphosphate carboxylase small chain; TIP: tonoplast intrinsic protein; TBL: TRICHOME BIREFRINGENCE-LIKE (xylan acetylation); ZIP: zinc transporter.
FIGURE 6 in The reinstatement of Rafflesia banaoana (Rafflesiaceae), and implications for assessing species diversity and conservation requirements of the world's largest flowers
FIGURE 6. Photos of Rafflesia banaoana from different localities. A–B. Mt. Cabcabulao. C. Mt. Ab-abaka. D. Kulaju Forest, Tinglayan Municipality. E–I. Mt. Magadgad. Photo Credits: A—P.L.Malabrigo Jr.; B, C, E–I—A.B.Tobias; D—R.A.Ogsar
FIGURE 5. Rafflesia leonardi. A1. Mature flower bud. A2. Dissected male flower bud. B1 in The reinstatement of Rafflesia banaoana (Rafflesiaceae), and implications for assessing species diversity and conservation requirements of the world's largest flowers
FIGURE 5. Rafflesia leonardi. A1. Mature flower bud. A2. Dissected male flower bud. B1. Flower found in Calabagan Watershed Forest Reserve. B2. Flower found in Amro River Protected Landscape. C. Dissected female flower showing the characters of the processes, disk column, annulus structure and ovary. D. Enlarged view of the column of female flower showing short hairs on the surface of annulus interior. E1. Annulus structure of male flower showing white hairs on the surface of the annulus interior. E2. Disk under-surface of male flower. F1. View from above the disk of male flower bud. F2. Disk of mature flower. Photo credits: A1, A2, C, D, E1, E2, F1, F2— A.B.Tobias; B1—E.Agbayani; B2.—M.Aguan
FIGURE 4 in The reinstatement of Rafflesia banaoana (Rafflesiaceae), and implications for assessing species diversity and conservation requirements of the world's largest flowers
FIGURE 4. Habitat of Rafflesia banaoana and R. leonardi. A. Overlooking view of mountains in Banao Protected Landscape (BPL). B. Mature flower of R. banaoana (~43 cm across) in Mt. Magadgad. C. Habitat of R. banaoana in Mt. Mapga. D. R. banaoana with the park rangers of BPL. E. Habitat of R. leonardi in Calabgan Watershed Forest Reserve (CWFR) with the locals and staff of the protected area. F. Flower buds of R. leonardi in CWFR. G. Habitat of R. leonardi in Amro River Protected Landscape. H. Vegetation in the type locality of R. leonardi in Mt. Rabuaran, Sitio Kanapawan, Barangay Bolos Point.—Photos by A.B.Tobias
FIGURE 2. Rafflesia banaoana. A. Female flower. B in The reinstatement of Rafflesia banaoana (Rafflesiaceae), and implications for assessing species diversity and conservation requirements of the world's largest flowers
FIGURE 2. Rafflesia banaoana. A. Female flower. B. Cross section showing the processes, annulus structure and ovary. C. Annulus interior of female flower. D. Disk undersurface of male flower. E. Processes. F. Ramenta near the base of perigone tube. Drawn from Tobias 2019-1 (LBC) and Tobias 2019-2 (PNH) by C.J.Thorogood
FIGURE 3. Rafflesia banaoana. A1. Dissected male flower bud. A2. Flower bud. B in The reinstatement of Rafflesia banaoana (Rafflesiaceae), and implications for assessing species diversity and conservation requirements of the world's largest flowers
FIGURE 3. Rafflesia banaoana. A1. Dissected male flower bud. A2. Flower bud. B. Lateral view of the perigone lobes with bracts. B. Female flower. d1. Enlarged view of the surface of perigone lobes with warts. d2. Enlarged view of the diaphragm's surface. E1. Dissected perigone tube showing filiform ramenta. E2. Simple filiform with few lobed ramenta in the lower perigone tube. E3. Shallowly and deeply-bilobed and multi-lobed with few merged ramenta in the middle perigone tube. E4. Multi-lobed, merged and fence-like ramenta in the upper perigone tube and near the diaphragm's aperture. F. Dissected female flower showing the characters of the processes, disk, column, annulus structure and ovary. G1. Annulus structure of male flower.' G2. Disk under surface showing anthers embedded in sulci. G3. Annulus structure of female flower. G4. Stigmatic surface. H1. Column of male flower showing conspicuous processes pointed towards the margin of the disk. H2. Top view of the processes. H3 and H4. Processes of female flower with apical hairs. H5. Enlarged view of the column showing short hairs on disk's rim and bristles on the disk's undersurface and annulus interior. and I. Tetrastigma cf. sepulchrei, host of R. banaoana. Photo credits: A1, A2, B, C, E1, E2, E3, E4, F, G3, G4, I—A.B. Tobias. D1, D2, G1, G2, H1-H4—G.K. Penetrante
FIGURE 1 in Identification of ancient Cladocera-like fossils requires homologies: The Jurassic Kuqaia is not a Waterflea
FIGURE 1. Basic features of anomopod ephippia in the Cladocera (examples of two extant species of Daphnia) in comparison to the Jurassic fossil Kuqaia scanicus (unknown taxonomy). The hypothesis that Kuqaia fossils could be cladocerans, is rejected in this study. A. Daphnia (Ctenodaphnia) magna ephippial female, habitus in lateral view and the outline of the ephippium (grey) with two diapausing embryos (black). B. Daphnia (Ctenodaphnia) magna, ephippium in lateral view (some typical dorsal spinules are shown and appendages, which may be torn off or broken). C. Daphnia (Ctenodaphnia) magna, detail of the lateral surface of the ephippium. D. Daphnia (Daphnia) pulex species complex, ephippium in lateral view. E. Kuqaia scanicus fossil, oriented as interpreted in the text of Peng et al. (2023), with "posterior" appendages. D. Kuqaia scanicus fossil, reconstruction after Peng et al. (2023) shown at the same scale as the cladoceran ephippia (A–B and D) and oriented as in E. Images redrawn from Mergeay et al. (2005) (A,D) and Peng et al. (2023) (F); the other drawings are based on SEM photos in Kotov et al. (2019) (B,C) and Peng et al. (2023) (E).
Genome assemblies for Hadza Prevotella Require Diet-derived Microbiota Accessible Carbohydrates to Persist in mice.
<p>Genome scaffolds, annotations, and CAZy prediction for Gellman et al., 2023.</p>
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.