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FIGURE 3 in Molecular characterization of Astyanax species (Characiformes: Characidae) from the upper Paraguaçu River basin, a hydrographic system with high endemism
FIGURE 3 | Species tree showing phylogenetic relationships for Astyanax's MOTUs from the upper Paraguaçu River basin. The tree was generated using approximately 2,230 bp obtained for the COI, Cytb, and S7 sequences for the samples indicated in Tab. S1. The topology corresponds to the Bayesian tree. The numbers on the branches are bootstrap values for the posterior probability for Bayesian species tree and speciation probability values of BP&P species delimitation. The scale bar indicates nucleotide substitutions per site.
FIGURE 2 in Molecular characterization of Astyanax species (Characiformes: Characidae) from the upper Paraguaçu River basin, a hydrographic system with high endemism
FIGURE 2 | Bayesian tree showing phylogenetic relationships among Astyanax species, using 1,792 COI sequences available in the Bold system database, and 75 ones produced in this study for specimens of Astyanax endemic to the upper Paraguaçu River basin. A. Clusters (black) for the clade 1 formed by Astyanax species closely related to the specimens collected in the Paraguaçu River; and clusters (grey) for the remaining analyzed Astyanax species. B. Clade 1 in details, depicting the delimitation species results using BIN, ABGD, and GMYC approaches. Black rectangles represent the distinct number of MOTUs identified by the three analyses: BIN (MOTU 1-5); ABGD (MOTU 1-19); GMYC (MOTU 1-50). The numbers in the nodes correspond to the main clusters of species (Tab. S2). Nodes marked with an asterisk denote posterior probabilities greater than 0.9. Species of Astyanax from the upper Paraguaçu River basin are highlighted in colored rectangles. Astyanax sp. sequences were download from BOLD system database. Our studied species are in bold letters. The colors of the species name are highlighted in accordance with Fig. 1.
FIGURE 1 in Molecular characterization of Astyanax species (Characiformes: Characidae) from the upper Paraguaçu River basin, a hydrographic system with high endemism
FIGURE 1 | Map of the Paraguaçu River basin, Bahia, northeastern Brazil, showing collection sites of Astyanax species sampled in this study and for two Astyanax sp. available in the BOLD system database (*), with the exception of A. hamatilis. Astyanax rupestris from the Coisa Boa River (dark blue square) and Cumbuca River (dark blue circle), A. aff. rupestris from the Piabinha River (half yellow and blue circle), Astyanax sp. from the Piabinha River (orange circle*), A. lorien from the Preto River (pink circle), Astyanax sp. from Coité River (brown circle*), A. brucutu from the Pratinha River (red circle), and A. epiagos from the Ferro Doido River (green circle). The colors of the symbols on the map are in accordance with Fig. 2. Scale 1:1300723.
Linked collectors and determiners for: Macaronesian Muscidae (Diptera). I. The genus Hebecnema Schnabl with description of a new Canarian endemic species and a review of the European fauna.
Natural history specimen data linked to collectors and determiners held within, "Macaronesian Muscidae (Diptera). I. The genus Hebecnema Schnabl with description of a new Canarian endemic species and a review of the European fauna". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="http://bionomia.net/dataset/a7a5a68c-6084-4cf9-b941-d80718973a7d">https://bionomia.net/dataset/a7a5a68c-6084-4cf9-b941-d80718973a7d</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/a7a5a68c-6084-4cf9-b941-d80718973a7d">https://gbif.org/dataset/a7a5a68c-6084-4cf9-b941-d80718973a7d</a>. Formatted as a Frictionless Data package.
Figure 8 in High endemic freshwater mussel (Bivalvia: Unionida) diversity in western Borneo, with description of three new species
Figure 8. (A) maximum likelihood (ML) phylogenetic tree of Pseudodon and (B) haplotype network of P. walpolei inferred from the COI dataset. Values at nodes indicate Bayesian inference (BI) posterior probability percentage/ML ultrafast bootstrap values. Support values>95% for both phylogenetic analyses are indicated by an asterisk. Support values marked with '-' indicate nodes that differ in the BI tree.
Figure 7 in High endemic freshwater mussel (Bivalvia: Unionida) diversity in western Borneo, with description of three new species
Figure 7. (A) phylogenetic tree of Lens, and (B) haplotype network of the L. contradens–lugens–micropterus clade inferred from the COI dataset.
Figure 6 in High endemic freshwater mussel (Bivalvia: Unionida) diversity in western Borneo, with description of three new species
Figure 6. (A) maximum likelihood (ML) phylogenetic tree and (B) haplotype network of Rectidens inferred from the COI dataset. Values at nodes indicate Bayesian inference (BI) posterior probability percentage/ML ultrafast bootstrap values. Support values>95% for both phylogenetic analyses are indicated by an asterisk. Support values marked with '-' indicate nodes that differ in the BI tree.
Figure 5 in High endemic freshwater mussel (Bivalvia: Unionida) diversity in western Borneo, with description of three new species
Figure 5. Images of type localities of (A) Ctenodesma mawonae, i.e. Sungai Sebua Jebung in the Sarawak River basin, Jambusan, Bau, Sarawak, Malaysian Borneo, and (B) Ctenodesma bersinara and Rectidens lauris, i.e. Sungai Rempangi, Pawan River basin, West Kalimantan, Indonesian Borneo.
Figure 4 in High endemic freshwater mussel (Bivalvia: Unionida) diversity in western Borneo, with description of three new species
Figure 4. Holotypes of Ctenodesma bersinara, Sungai Rempangi, Pawan River basin, West Kalimantan, Indonesian Borneo; Ctenodesma mawonae, Sungai Sebua Jebung, Sarawak River basin, Jambusan, Bau, Sarawak, Malaysian Borneo; and Rectidens lauris, Sungai Rempangi, Pawan River basin, West Kalimantan, Borneo. Abbreviations: FKH, Fahutan Kapuas Hulu Collection, Tanjungpura University, Indonesia; FRST, Faculty of Resource Science and Technology Collection, Universiti Malaysia Sarawak, Malaysia.
Figure 2 in High endemic freshwater mussel (Bivalvia: Unionida) diversity in western Borneo, with description of three new species
Figure 2. Maximum likelihood (ML) phylogenetic tree inferred from the combined (COI + 16S + ND1 + 18S + 28S) dataset. Values at nodes indicate Bayesian inference (BI) posterior probability percentage/ML ultrafast bootstrap values. Support values>95% for both phylogenetic analyses are indicated by an asterisk. Support values marked with '-' indicate nodes that differ in the BI tree. Species present in Borneo in bold. Species for which DNA sequences are first reported in the present paper in red. Gonideinae clades marked in red; non-Gonideinae clades marked in green.
Figure 1 in High endemic freshwater mussel (Bivalvia: Unionida) diversity in western Borneo, with description of three new species
Figure 1. Map of western Borneo, showing sites and species of freshwater mussels (Bivalvia: Unionida) found and collected during fieldwork in 2019 and 2022. Protected Areas shapefiles derived from UNEP-WCMC and IUCN (2023). HydroBASINS (Lehner and Grill 2013) shown as solid (level 4) and dashed (level 6) lines.
Figure 3 in High endemic freshwater mussel (Bivalvia: Unionida) diversity in western Borneo, with description of three new species
Figure 3. Types and sequenced specimens of Discomya radulosa, Caudiculatus caudiculatus, Lens lugens, and Pseudodon walpolei. Abbreviations: FKH, Fahutan Kapuas Hulu Collection, Tanjungpura University, Indonesia; MCZ, Museum of Comparative Zoology, Cambridge, USA; MNHN, Muséum National d'Histoire Naturelle, Paris, France; ZMB, Museum für Naturkunde, Berlin, Germany
Figure 19 in Are some of the birds endemic to the Tres Marías Islands (Mexico) species?
Figure 19. Mainland Rufous-backed Robin Turdus rufopalliatus far from the Tres Marías, with an anomalous grey breast-band resembling T. r. graysoni and note the prominent throat streaks and warm-coloured back, wing-coverts and flanks, Cuernavaca, Morelos, Mexico, June 2017 (Juan Manuel Ramos Merino)
Figure 20. Presumed Rufousbacked Robin Turdus rufopalliatus graysoni with mainly narrow throat streaks, a in Are some of the birds endemic to the Tres Marías Islands (Mexico) species?
Figure 20. Presumed Rufousbacked Robin Turdus rufopalliatus graysoni with mainly narrow throat streaks, a strong salmon wash on the breast, and wing-coverts and back colours close to those of non-graysoni T. rufopalliatus, Isla María Cleofas, November 2015 (Javier Cruz Nieto)
Figure 15 in Are some of the birds endemic to the Tres Marías Islands (Mexico) species?
Figure 15. Back patern, size and intensity of orange in Streak-backed Oriole Icterus pustulatus specimens from Nayarit, from left to right: two typical microstictus / yaegeri, two presumed hybrids (with Phillips' specimen at right) and a typical graysoni; note the similar overall size of graysoni and Phillips' specimen, which is, however, more orange overall (especially the head), while the other presumed hybrid (which appears almost as long due to specimen preparation) has back streaks intermediate between graysoni and typical mainland Nayarit orioles (Héctor Gómez de Silva)
Figure 11 in Are some of the birds endemic to the Tres Marías Islands (Mexico) species?
Figure 11. Pair of Mexican Parrotlets Forpus cyanopygius insularis copulating, Isla María Cleofas, May 2016; note the male's pale malachite-green underparts, neck-sides and postocular region contrasting with the yellower green cheeks, throat, forehead and forecrown, and that the male's undertail-coverts are not concolorous with the breast and belly (contra Grant 1965a) (Javier Cruz Nieto)
Figure 12 in Are some of the birds endemic to the Tres Marías Islands (Mexico) species?
Figure 12. Instituto de Biología, Universidad Nacional Autónoma de México specimens of Mexican Parrotlet Forpus cyanopygius from Nayarit; the two specimens on the right are adult male insularis, their malachitegreen breast and belly contrasts strongly with the throat, unlike in cyanopygius specimens (Héctor Gómez de Silva)
Figure 8 in Are some of the birds endemic to the Tres Marías Islands (Mexico) species?
Figure 8. Presumed hybrid Broad-billed Hummingbird Cynanthus lawrencei × magicus specimen, Isla María Cleofas, April 2016 (Héctor Gómez de Silva)
Figure 7 in Are some of the birds endemic to the Tres Marías Islands (Mexico) species?
Figure 7. Presumed hybrid Broad-billed Hummingbird Cynanthus lawrencei × magicus specimen in the Instituto de Biología, Universidad Nacional Autónoma de México collection; note magicus-like blue throat and lawrencei-like white-edged grey undertail-coverts (Héctor Gómez de Silva)
Figure 5 in Are some of the birds endemic to the Tres Marías Islands (Mexico) species?
Figure 5. Two specimens of male Broad-billed Hummingbirds Cynanthus latirostris with similarly grey anterior undertailcoverts and white or whitish posterior undertail-coverts; above C. l. magicus, below, C. l. lawrencei (Héctor Gómez de Silva)
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.