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2,185 results for “integrated taxonomy”
FIGURES 18–20 in The epigean Australasian species of Neobidessodes gen.n. diving beetles- a revision integrating morphology, cybertaxonomy, DNA taxonomy and phylogeny (Coleoptera: Dytiscidae, Bidessini)
FIGURES 18–20. Median lobe of aedeagus in ventral (a) and lateral view (b), and right paramere in lateral view (c): 18) Neobidessodes bilita; 19) N. denticulatus and 20) N. grossus (scale bar = 0.5 mm) (Photos: L. Hendrich).
Fig. 4 in Integrative Taxonomy Reveals a New Melitaea (Lepidoptera: Nymphalidae) Species Widely Distributed in the Iberian Peninsula
Fig. 4. Pictures of the northern and southern forms of Melitaea pseudornata stat. nov. and of Melitaea phoebe. An approximate distribution of M. pseudornata based on the sequenced specimens is given; populations in eastern and southern Iberia are apparently more scattered and restricted to mountain ranges.
Fig. 2. A in Integrative Taxonomy Reveals a New Melitaea (Lepidoptera: Nymphalidae) Species Widely Distributed in the Iberian Peninsula
Fig. 2. A. Haplotype network of the Melitaea phoebe species group based on the barcode fragment of the COI gene.The area of the circles is proportional to the number of sequences they represent. B. European distribution of the three haplogroups of Melitaea pseudornata stat. nov., M. phoebe and Melitaea ornata. C. Bayesian inference phylogeny obtained using a partitioned alignment of the nuclear genes EF-1ɑ, MDH, wg and RPS5. Posterior probabilities at species-level and for higher relationships are indicated, and scale units are presented in substitutions per site.
Fig. 1 in Integrative Taxonomy Reveals a New Melitaea (Lepidoptera: Nymphalidae) Species Widely Distributed in the Iberian Peninsula
Fig. 1. Iberian sampling sites of Melitaea pseudornata stat. nov. and Melitaea phoebe. The relationship between flight time and altitude is depicted. All identifications are based, at least, on the sequencing of the wg gene.
Fig. 3. A in Integrative Taxonomy Reveals a New Melitaea (Lepidoptera: Nymphalidae) Species Widely Distributed in the Iberian Peninsula
Fig. 3. A. Landmarks on the processus posterior of a Melitaea phoebe male genitalia. B. Typical processus posterior shapes of Melitaea pseudornata stat. nov., M. phoebe and Melitaea ornata. C. PCA built using the mean shapes of all the studied species. Species mean shapes are shown. D. Linear discriminant analysis (LDA) scatterplot for the studied taxa. Group centroids are shown. All the groups had equal prior probability independently from the sample size of the group.
Figure 9. A, B, Enigmaticolus nipponensis comb. nov. A in Integrative taxonomy of enigmatic deep-sea true whelks in the sister-genera Enigmaticolus and Thermosipho (Gastropoda: Buccinidae)
Figure 9. A, B, Enigmaticolus nipponensis comb. nov. A, holotype of Enigmaticolus monnieri (MNHN IM-2000–20464), Tulear, Madagascar, trawled by commercial fishery vessels (shrimpers), Mozambique Channel, 800 m deep, shell length 63.7 mm (photo courtesy of Manuel Caballer). B, MIRIKY station CP3279 (15°22'S, 45°57'E), between Majunga and CapSaint-André, Madagascar, 780–1020 m deep, shell length 99.4 mm (MNHN IM-2009–7079; photo courtesy of Delphine Brabant and Barbara Buge). C, Enigmaticolus marshalli. Holotype (NMNZ M.274915), NIWA 32231 station 2007204 (25°48'S, 177°10'W), Monowai Caldera, south-south-west of Tonga, Kermadec Ridge, New Zealand, 1026 m deep, shell length 90.1 mm. D, Enigmaticolus voluptarius, holotype (MNHN IM-2000–27067), EBISCO station CP2554 (21°05'S, 158°33'E), Bellona, New Caledonia, 704–720 m deep, shell length 77.8 mm. Scale bars = 2 cm.
Figure 8 in Integrative taxonomy of enigmatic deep-sea true whelks in the sister-genera Enigmaticolus and Thermosipho (Gastropoda: Buccinidae)
Figure 8. Maximum likelihood molecular phylogenetic tree of Buccinidae based on a 645-bp alignment of the COI gene. Node values are bootstrap values, only those above 70 are shown. Scale bars indicate the number of substitutions per site. Numbers appearing at the end of the names are the GenBank accession numbers. SCS, South China Sea.
Figure 3. Enigmaticolus nipponensis comb. nov. A in Integrative taxonomy of enigmatic deep-sea true whelks in the sister-genera Enigmaticolus and Thermosipho (Gastropoda: Buccinidae)
Figure 3. Enigmaticolus nipponensis comb. nov. A, holotype (NSMT-Mo 71689), Iheya North Original site, Iheya North hydrothermal field (27°47.180'N, 126°54.149'E), 1049 m deep, shell length 93.8 mm (photo courtesy of Kazunori Hasegawa). B, paratype #4 (JAMSTEC 009556), Sumisu Caldera, Izu-Ogasawara Arc (31°47.180'N, 126°54.149'E), 1049 m deep, shell length 90.1 mm (photo courtesy of Takashi Okutani). C, Iheya North Original site, Iheya North hydrothermal field (27°47.4495'N, 126°53.8149'E), 1002 m deep, shell length 80.2 mm (NSMT-Mo 79171). D, Natsu site, Iheya North hydrothermal field (27°46.8522'N, 126°54.0584'E), 1078 m deep, shell length 81.2 mm (NSMT-Mo 79171). Scale bars = 2 cm.
Figure 6. Enigmaticolus desbruyeresi comb. nov. A in Integrative taxonomy of enigmatic deep-sea true whelks in the sister-genera Enigmaticolus and Thermosipho (Gastropoda: Buccinidae)
Figure 6. Enigmaticolus desbruyeresi comb. nov. A, holotype (NSMT-Mo 69949), BIOLAU 89, Station 1, Lau back-arc basin (23°32'S, 176°43'W), 1900 m deep, shell length 69.0 mm (photo courtesy of Kazunori Hasegawa). B, Pacmanus, Manus back-arc basin (3°43.674'S, 151°40.002'W), 1632 m deep (NSMT Mol-79177), the same specimen before and after removal of sulphide deposits, shell length 72.8 mm. C, AURORA 2007 station CP2751 (15°35.7'N, 121°55.7'E), North of Polillo Island, Eastern Luzon, Philippines, 1456–1471 m deep, shell length 43.2 mm (MNHN IM-2012–19771). Scale bars = 2 cm.
Figure 2 in Integrative taxonomy of enigmatic deep-sea true whelks in the sister-genera Enigmaticolus and Thermosipho (Gastropoda: Buccinidae)
Figure 2. In situ observations of deep-sea whelks as indicated by white arrows. A, Natsu site, Iheya North hydrothermal field (27°46.8522'N, 126°54.0584'E), 1078 m deep, by JAMSTEC ROV Hyper-Dolphin. B, Iheya North Original site, Iheya North hydrothermal field (27°47.4495'N, 126°53.8149'E), 1002 m deep. C, Aki site, Iheya North hydrothermal field (27°46.103'N, 126°54.090'E), 1086 m deep. D, E, in mussel (Bathymodiolus spp.) bed, 'F site', South China Sea (22°06.945'N, 119°17.128'E), 1128 m deep, by ROV ROPOS. F, on a authigenic carbonate cliff near edge of the seep, 'F site', South China Sea (22°6.912'N, 119°17.104'E), by ROV ROPOS.
Figure 4. Enigmaticolus nipponensis comb. nov. A in Integrative taxonomy of enigmatic deep-sea true whelks in the sister-genera Enigmaticolus and Thermosipho (Gastropoda: Buccinidae)
Figure 4. Enigmaticolus nipponensis comb. nov. A, Natsu site, Iheya North hydrothermal field (27°46.8522'N, 126°54.0584'E), 1078 m deep, shell length 90.4 mm (NSMT-Mo 79173). B, Aki site, Iheya North hydrothermal field (27°46.103'N, 126°54.090'E), 1086 m deep, shell length 84.6 mm (NSMT-Mo 79174). C, Aki site, Iheya North hydrothermal field (27°46.103'N, 126°54.090'E), 1086 m deep, shell length 79.0 mm (NSMT Mol-79175). D, Kuroshima Knoll hydrocarbon seep site (24°07.830'N, 124°11.562'E), 641 m deep, shell length 88.7 mm (NSMT Mol-79176). Scale bars = 2 cm.
Figure 5. A–C, Enigmaticolus nipponensis comb. nov. A in Integrative taxonomy of enigmatic deep-sea true whelks in the sister-genera Enigmaticolus and Thermosipho (Gastropoda: Buccinidae)
Figure 5. A–C, Enigmaticolus nipponensis comb. nov. A, 'F site' methane seep, South China Sea (22°06.945'N, 119°17.128'E), 1128 m deep, shell length 94.9 mm (HKBU Mol-2020010001). B, 'F site' methane seep, South China Sea (22°06.945'N, 119°17.128'E), 1128 m deep, shell length 87.5 mm (HKBU Mol-2020010002). C, 'F site' methane seep, South China Sea (22°6.912'N, 119°17.104'E), 1127 m deep, shell length 91.4 mm (HKBU Mol-2020010003). D, Thermosipho auzendei, holotype (MNHN IM-2000–7049), Rehu site, East Pacific Rise at 17°S (17°24.85'S, 113°12.15'W), 2578 m deep, shell length 62.0 mm (photo courtesy of Philippe Maestrati). Scale bars = 2 cm.
Supplementary material 3 from: Zograf JK, Semenchenko AA, Mordukhovich VV (2024) New deep-sea species of Aborjinia (Nematoda, Leptosomatidae) from the North-Western Pacific: an integrative taxonomy and phylogeny. ZooKeys 1189: 231-256. https://doi.org/10.3897/zookeys.1189.111825
Bayesian 28S rDNA phylogeny of the family Leptosomatidae, using the SYM+I+G model of nucleotide substitution
Supplementary material 2 from: Zograf JK, Semenchenko AA, Mordukhovich VV (2024) New deep-sea species of Aborjinia (Nematoda, Leptosomatidae) from the North-Western Pacific: an integrative taxonomy and phylogeny. ZooKeys 1189: 231-256. https://doi.org/10.3897/zookeys.1189.111825
Bayesian 18S rDNA phylogeny of the family Leptosomatidae, using the SYM+I+G model of nucleotide substitution
FIGURE 2 in Integrative taxonomy of Iberian Merodon species (Diptera, Syrphidae)
FIGURE 2. Combined analysis of COI and 28S sequences. Strict consensus of 9 equally parsimonious trees, L = 682, CI = 0.56, RI = 0.66. Open circles denote homoplasious characters and filled circles denote nonhomoplasious characters. Bremer support values are indicated above branches, bootstrap values below.
FIGURE 1 in Integrative taxonomy of Iberian Merodon species (Diptera, Syrphidae)
FIGURE 1. Parsimony analysis of COI sequences. Strict consensus of 63 equally parsimonious trees, L =577, CI = 0.53, RI = 0.83. Open circles denote homoplasious characters and filled circles denote nonhomoplasious characters. Bremer support values are indicated above branches, bootstrap values below.
Figure 2 in Using geometric morphometrics for integrative taxonomy: an examination of head shapes of milksnakes (genus Lampropeltis)
Figure 2. The eleven landmarks used for geometric morphometric analyses (A) and the Procrustes superimpostition consensus of the landmarks averaged across all specimens (B).
Figure 4 in Using geometric morphometrics for integrative taxonomy: an examination of head shapes of milksnakes (genus Lampropeltis)
Figure 4. Thin-plate splines of each species warped from the Procrustes consensus alignment of all species.
Figure 1 in Using geometric morphometrics for integrative taxonomy: an examination of head shapes of milksnakes (genus Lampropeltis)
Figure 1. Representatives of the six milksnake species used in the present study; A, Lampropeltis triangulum. B, Lampropeltis gentilis. C, Lampropeltis elapsoides. D, Lampropeltis polyzona. E, Lampropeltis abnorma. F, Lampropeltis micropholis.
Figure 8. A in Integrative taxonomy reveals a new gall midge genus and species (Diptera: Cecidomyiidae) developing in the flower buds of Pongamia pinnata (Fabaceae) in Japan
Figure 8. A maximum likelihood phylogenetic tree based on the alignment of partial sequences of COI* 16S* ITS* CAD* and 28S genes (4654 bp including gaps). Support of less than 50% bootstrap value is not shown.
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.